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Peter F. Stadler

max planck society

119H-index
1.3KPaper Count
8.7WCitation Count
Published Papers 251
Publication Date
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Enumeration of Autocatalytic Subsystems in Large Chemical Reaction Networks
errJournal of Chemical Theory and Computation
IF5.5
err2026-05-04
err0
errOAAI
errRichard Golnik; Thomas Gatter; Peter F. Stadler; Nicola Vassena
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ProQSAR: A modular and reproducible framework for small-data QSAR modeling with fit-and-use models
errJournal of Cheminformatics
IF5.7
err2026-04-22
err0
errOAAI
errTuyet-Minh Phan; Tieu-Long Phan; Phuoc-Chung Van-Nguyen; Lai Hoang Son Le; Van-Thinh To; Tuyen Ngoc Truong; Daniel Merkle; Peter F. Stadler
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Boredom as homeostasis of cognitive resource utilization using spiking neural networks
errNeurocomputing
IF6.5
err2026-02-28
err0
errOAAI
errPatrick Schöfer; James Danckert; Peter F. Stadler; Martin Bogdan
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errSave
Computational Analysis of Telomerase RNA Evolution in Caenorhabditis Species
errNon-Coding RNA
IF3
err2026-02-27
err0
errOAAI
errChristopher Klapproth; Franziska Reinhardt; Peter F. Stadler; Sven Findeiß
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errSave
Integrating High-Throughput RNA-RNA Interaction Data Into RNA Secondary Structure Prediction
errBIOINFORMATICS RESEARCH AND APPLICATIONS, ISBRA 2025, PT II
IF0
err2026-01-01
err0
PREAI
errSkibinski, Denis; Spicher, Thomas; Sidl, Leonhard; Holotova, Paulina; Pan, Yingjie; Faissner, Maximilian; Velandia-Huerto, Cristian A.; Lorenz, Ronny; Waldl, Maria; Yao, Hua-Ting; Stadler, Peter F.
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errSave
Step Systems on Graphs
errVietnam Journal of Mathematics
IF0.7
err2026-01-01
err0
PREAI
errChangat, Manoj; Chavara, John J.; Chithra, M. R.; Mathew, Joseph; Stadler, Peter F.
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errSave
A Sankoff-Rousseau-Like Algorithm for Minimizing Lateral Gene Transfers and Losses on Single Origin Characters
errCOMPARATIVE GENOMICS, RECOMB-CG 2025
IF0
err2026-01-01
err0
PREAI
errSanchez, Alitzel Lopez; Scholz, Guillaume E.; Stadler, Peter F.; Lafond, Manuel
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errSave
SynCat: molecule-level attention graph neural network for precise reaction classification
errDigital Discovery
IF5.6
err2025-12-10
err0
errOAAI
errPhuoc-Chung Van Nguyen; Van-Thinh To; Ngoc-Vi Nguyen Tran; Tieu-Long Phan; Tuyen Ngoc Truong; Thomas Gärtner; Daniel Merkle; Peter F. Stadler
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errSave
SynKit: A Graph-Based Python Framework for Rule-Based Reaction Modeling and Analysis
errJOURNAL OF CHEMICAL INFORMATION AND MODELING
IF5.3
err2025-12-01
err0
PREAI
errPhan, Tieu-Long; Laffitte, Marcos E. Gonzalez; Weinbauer, Klaus; Merkle, Daniel; Andersen, Jakob Lykke; Fagerberg, Rolf; Gatter, Thomas; Stadler, Peter F.
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TRAMbio: a flexible python package for graph rigidity analysis of macromolecules
errBMC Bioinformatics
IF3.3
err2025-10-30
err0
errOAAI
errNicolas Handke; Thomas Gatter; Franziska Reinhardt; Peter F. Stadler
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errSave
Democratising Artificial Intelligence for Pandemic Preparedness and Global Governance in Latin American and Caribbean Countries
errMicrobial Biotechnology
IF5.2
err2025-10-22
err0
errOAAI
errUlisses Rocha; Robson Bonidia; Jude Dzevela Kong; Mariana Dauhajre; Claudio Struchiner; Guilherme Goedert; Peter F. Stadler; Danilo Sanches; Troy Day; Marcia C. Castro; John Edmunds; Manuel Colomé-Hidalgo; Demian Arturo Herrera Morban; Edian F. Franco; Cesar Ugarte-Gil; Patricia Espinoza-Lopez; Gabriel Carrasco-Escobar; André de Carvalho
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errSave
Assembly in Directed Hypergraphs
errPROCEEDINGS OF THE ROYAL SOCIETY A-MATHEMATICAL PHYSICAL AND ENGINEERING SCIENCES
IF3
err2025-10-15
err0
PREAI
errFlamm, Christoph; Merkle, Daniel; Stadler, Peter F.
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errSave
Adenosine kinase and ADAL coordinate detoxification of modified adenosines to safeguard metabolism
errCell
IF42.5
err2025-08-20
err0
errOAAI
errAkiko Ogawa; Satoshi Watanabe; Iuliia Ozerova; Allen Yi-Lun Tsai; Yoshihiko Kuchitsu; Harrison Byron Chong; Tomoyoshi Kawakami; Jirio Fuse; Wei Han; Ryuhei Kudo; Tomoki Naito; Kota Sato; Toru Nakazawa; Yasunori Saheki; Akiyoshi Hirayama; Peter F Stadler; Mieko Arisawa; Kimi Araki; Liron Bar-Peled; Tomohiko Taguchi; Shinichiro Sawa; Kenji Inaba; Fan-Yan Wei
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errSave
SynTemp: Efficient Extraction of Graph-Based Reaction Rules from Large-Scale Reaction Databases
errJOURNAL OF CHEMICAL INFORMATION AND MODELING
IF5.3
err2025-02-28
err0
errOAAI
errPhan, Tieu-Long; Weinbauer, Klaus; Laffitte, Marcos E. Gonzalez; Pan, Yingjie; Merkle, Daniel; Andersen, Jakob L.; Fagerberg, Rolf; Flamm, Christoph; Stadler, Peter F.
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errSave
Estimating realized relatedness in free- ranging macaques by inferring identity- by- descent segments
errPROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
IF9.1
err2025-01-14
err0
errOAAI
errFreudiger, Annika; Jovanovic, Vladimir M.; Huang, Yilei; Snyder- Mackler, Noah; Conrad, Donald F.; Miller, Brian; Montague, Michael J.; Westphal, Hendrikje; Stadler, Peter F.; Bley, Stefanie; Horvath, Julie E.; Brent, Lauren J. N.; Platt, Michael L.; Ruiz-Lambides, Angelina; Tung, Jenny; Nowick, Katja; Ringbauer, Harald
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errSave
Integrating comparative genomics and risk classification by assessing virulence, antimicrobial resistance, and plasmid spread in microbial communities with gSpreadComp
errGIGASCIENCE
IF3.9
err2025-01-01
err0
errOAAI
errKasmanas, Jonas Coelho; Magnusdottir, Stefania; Zhang, Junya; Smalla, Kornelia; Schloter, Michael; Stadler, Peter F.; de Leon Ferreira de Carvalho, Andre Carlos Ponce; Rocha, Ulisses
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errSave
Diverse prehistoric cattle husbandry strategies in the forests of Central Europe
errNATURE ECOLOGY & EVOLUTION
IF14.5
err2024-10-29
err0
errOAAI
errGillis, Rosalind E.; Kendall, Iain P.; Roffet-Salque, Melanie; Zanon, Marco; Anders, Alexandra; Arbogast, Rose-Marie; Bogucki, Peter; Brychova, Veronika; Casanova, Emmanuelle; Classen, Erich; Csengeri, Piroska; Czerniak, Lech; Domboroczki, Laszlo; Fiorillo, Denis; Gronenborn, Detlef; Hachem, Lamys; Jakucs, Janos; Ilett, Michael; Lyublyanovics, Kyra; Lenneis, Eva; Marciniak, Arkadiusz; Marton, Tibor; Oross, Krisztian; Pavuk, Juraj; Pechtl, Joachim; Pyzel, Joanna; Stadler, Peter; Staeuble, Harald; Vostrovska, Ivana; van Wijk, Ivo; Vigne, Jean-Denis; Balasse, Marie; Evershed, Richard P.
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errSave
Aberrant Mitochondrial tRNA Genes Appear Frequently in Animal Evolution
errGENOME BIOLOGY AND EVOLUTION
IF2.8
err2024-10-22
err0
errOAAI
errOzerova, Iuliia; Fallmann, Joerg; Moerl, Mario; Bernt, Matthias; Prohaska, Sonja J.; Stadler, Peter F.
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errSave
Reaction rebalancing: a novel approach to curating reaction databases
errJOURNAL OF CHEMINFORMATICS
IF5.7
err2024-07-19
err2
errOAAI
errPhan, Tieu-Long; Weinbauer, Klaus; Gaertner, Thomas; Merkle, Daniel; Andersen, Jakob L.; Fagerberg, Rolf; Stadler, Peter F.
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errSave
Comprehensive survey of conserved RNA secondary structures in full-genome alignment of Hepatitis C virus
errSCIENTIFIC REPORTS
IF3.9
err2024-07-02
err2
errOAAI
errTriebel, Sandra; Lamkiewicz, Kevin; Ontiveros, Nancy; Sweeney, Blake; Stadler, Peter F.; Petrov, Anton I.; Niepmann, Michael; Marz, Manja
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Research Directions

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Co-authors
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Mark Gerstein
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Stylianos E. Antonarakis
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Brian K. Kobilka
H-index: 140 · Papers: 520
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