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原

原致远 (Zhiyuan Yuan)

fudan university

15H-index
85Paper Count
1.1KCitation Count
Published Papers 40
Publication Date
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Spatial omics in the AI era: Technologies, algorithmic ecosystems, biological applications, and large model perspectives
erriMeta
IF33.2
err2026-07-06
err0
errOAAI
errHaoxiu Wang; Xinwang Yang; Siheng Wang; Zhe Yang; Xiuhui Yang; Yutong Yang; Zirong Li; Yuqi Ren; Qianqian Zhang; Bowen Zhao; Jingming Xiao; Yidong Wang; Junhao Dong; Zhenhao Kou; Jie Li; Liqun Yang; Erhu Zhao; Gregory Fonseca; Ruibang Luo; Mingyu Yang; Hongjuan Cui; Gengjie Jia; Dan Wang; Haoyang Li; Jun Ding; Zhiyuan Yuan; Haojing Shao
errShare
errSave
SOFisher: reinforcement learning-guided experiment designs for spatial omics
errNature Communications
IF15.7
err2026-05-25
err0
errOAAI
errZhuo Li; Weiran Wu; Chuangyi Han; Yan Cui; Tian Lu; Rongqin Ke; Jian Sun; Zhiyuan Yuan
errShare
errSave
Solving multimodal optimization problems by a knowledge transfer based dual niching differential evolution
errEgyptian Informatics Journal
IF4.3
err2026-05-08
err0
errOAAI
errZuowen Liao; Shuijia Li; Qiong Gu; Zhiyuan Yuan
errShare
errSave
Benchmarking alignment methods for spatial transcriptomics data
errNature Computational Science
IF18.3
err2026-04-03
err0
PREAI
errYunzhi Yan; Tianyi Gu; Chengcheng Sun; Yinghao Zhang; Yan Cui; Senlin Lin; Qi Zou; Yixuan Du; Chuangyi Han; Kairan Kang; Sijie Li; Yihan Zhao; Zhihong Lin; Zhiyuan Yuan; Bin-Zhi Qian
errShare
errSave
Scalable discovery of spatial multicellular patterns via neighborhood-to-sequence transformation
errCommunications Biology
IF5.1
err2026-04-01
err0
errOAAI
errFangyuan Zhao; Sheng Wang; Zhikang Wang; Yan Cui; Yi Zhao; Zhiyuan Yuan
errShare
errSave
3d-OT: a deep geometry-aware framework for heterogeneous slices alignment of spatial multi-omics
errNature Methods
IF32.1
err2026-03-27
err0
errOAAI
errBingjie Dai; Litai Yi; Peizhuo Wang; Hanshuang Li; Pengwei Hu; Yancheng Song; Jixiang Xing; Zhenxing Feng; Zhiyuan Yuan; Yongchun Zuo
errShare
errSave
DECODE: deep learning-based common deconvolution framework for various omics data
errNature Methods
IF32.1
err2026-03-02
err0
errOAAI
errTianyi Zhao; Renjie Liu; Yuzhi Sun; Bingtian Wang; Liyuan Zhang; Qiuhao Chen; Ruibang Luo; Zhiyuan Yuan; Guohua Wang; Liang Cheng; Yadong Wang
errShare
errSave
A memory and update strategy-based social group optimization for unknown parameter identification of photovoltaic modules
errPeerJ Computer Science
IF2.5
err2026-02-20
err0
PREAI
errNing, Bin; Cai, Bojun; Zeng, Meng; Xiong, Siyi; Shan, Chenghu; Yuan, Zhiyuan; Gu, Qiong; Hu, Chunyang; Hua, Qiaozhi
errShare
errSave
Bridging the dimensional gap from planar spatial transcriptomics to 3D cell atlases
errNature Methods
IF32.1
err2025-12-31
err0
PREAI
errSenlin Lin; Zhikang Wang; Yan Cui; Qi Zou; Chuangyi Han; Rui Yan; Zhidong Yang; Wei Zhang; Rui Gao; Jiangning Song; Michael Q. Zhang; Hanchuan Peng; Jintai Yu; Jianfeng Feng; Yi Zhao; Zhiyuan Yuan
errShare
errSave
High-parameter spatial multi-omics through histology-anchored integration
errNature Methods
IF32.1
err2025-12-17
err0
PREAI
errYonghao Liu; Chuyao Wang; Zhikang Wang; Liang Chen; Zhi Li; Jiangning Song; Qi Zou; Rui Gao; Bin-Zhi Qian; Xiaoyue Feng; Renchu Guan; Zhiyuan Yuan
errShare
errSave
stSCI: A multi-task learning framework for integrative analysis of single-cell and spatial transcriptomics data
errThe Innovation
IF0
err2025-12-03
err0
errOAAI
errHan Shu; Jing Chen; Jialu Hu; Ruifen Zhang; Yoongtian Wang; Jiajie Peng; Dan Xu; Xuequn Shang; Zhiyuan Yuan; Tao Wang
errShare
errSave
Benchmarking multi-slice integration and downstream applications in spatial transcriptomics data analysis
errGenome Biology
IF9.4
err2025-10-03
err0
errOAAI
errKejing Dong; Yicheng Gao; Qi Zou; Yan Cui; Chuangyi Han; Senlin Lin; Zhikang Wang; Chen Tang; Xiaojie Cheng; Fangliangzi Meng; Xiaohan Chen; Shuguang Wang; Xuan Jin; Jingya Yang; Chen Zhang; Guohui Chuai; Zhiyuan Yuan; Qi Liu
errShare
errSave
Progressive auto-encoding for domain adaptation in evolutionary multi-task optimization
errApplied Soft Computing
IF6.6
err2025-09-24
err0
PREAI
errQiong Gu; Yanchi Li; Wenyin Gong; Zhiyuan Yuan; Bin Ning; Chunyang Hu; Jicheng Wu
errShare
errSave
Cancer therapy resistance from a spatial-omics perspective
errClinical and Translational Medicine
IF6.8
err2025-07-17
err0
errOAAI
errYinghao Zhang; Cheng Yang; Xi Chen; Liang Wu; Zhiyuan Yuan; Fan Zhang; Bin-Zhi Qian
errShare
errSave
Investigation on the ignition and combustion performance of strained ring biomass hydrocarbon fuel 6,6-dimethylspiro[bicyclo[3.1.1] heptane-2,1′-cyclopropane]
errFUEL
IF7.5
err2025-04-26
err0
PREAI
errChen, Xinyang; Yuan, Zhiyuan; Yan, Shu; Li, Zaizheng; Zhang, Hang; Dai, Yitong; Fang, Wenjun
errShare
errSave
Investigations on thermal oxidation of high energy-density tetrahydrotricyclopentadiene fuel
errFUEL
IF7.5
err2025-04-01
err0
PREAI
errZhang, Yiran; Yuan, Zhiyuan; Mi, Ji; Li, Xufeng; Guo, Yongsheng; Fang, Wenjun
errShare
errSave
Combining multilevel calculation protocol and QSAR model to predict the activity of phenolic antioxidants suitable for high-energy-density fuels at different temperatures
errENERGY
IF9.4
err2025-04-01
err0
PREAI
errYuan, Zhiyuan; Guo, Yongsheng; Fang, Wenjun
errShare
errSave
Novel high-performance endothermic fuels from quasi-homogeneous nano-engineering
errFUEL
IF7.5
err2025-03-01
err0
PREAI
errMi, Ji; Wang, Peilun; Wang, Hongshang; Shao, Chongkun; Yuan, Zhiyuan; Ma, Jingkai; Guo, Yongsheng; Lin, Xufeng; Fang, Wenjun
errShare
errSave
SpaGRA: Graph augmentation facilitates domain identification for spatially resolved transcriptomics
errJOURNAL OF GENETICS AND GENOMICS
IF7.1
err2025-01-01
err0
PREAI
errSun, Xue; Zhang, Wei; Li, Wenrui; Yu, Na; Zhang, Daoliang; Zou, Qi; Dong, Qiongye; Zhang, Xianglin; Liu, Zhiping; Yuan, Zhiyuan; Gao, Rui
errShare
errSave
mFusion: a multiscale fusion method bridging neuroimages to genes through neurotransmissions in mental health disorders
errCOMMUNICATIONS BIOLOGY
IF5.1
err2024-12-25
err0
errOAAI
errCao, Luolong; Wang, Zhenyi; Yuan, Zhiyuan; Luo, Qiang
errShare
errSave

Research Directions

生物信息学概率图模型空间组学
Co-authors
Cooperation Journals
X
Xun Xu
H-index: 148 · Papers: 1.1K
张钒 cover
张钒 (Fan Zhang)
H-index: 125 · Papers: 1.1K
J
Jin‐Tai Yu
H-index: 97 · Papers: 600
M
Michael Q. Zhang
H-index: 81 · Papers: 391
李
李逸平 (Yixue Li)
H-index: 75 · Papers: 699
View more