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J

John Westbrook

rutgers university system

60H-index
221Paper Count
2.2WCitation Count
Published Papers 38
Publication Date
Making fluorescence-based integrative structures and associated kinetic information accessible
err2024-09-30
err0
PREAI
errHanke, Christian A.; Westbrook, John D.; Webb, Benjamin M.; Peulen, Thomas-O.; Lawson, Catherine L.; Sali, Andrej; Berman, Helen M.; Seidel, Claus A. M.; Vallat, Brinda
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PDB NextGen Archive: centralizing access to integrated annotations and enriched structural information by the Worldwide Protein Data Bank
err2024-05-27
err4
errOAAI
errChoudhary, Preeti; Feng, Zukang; Berrisford, John; Chao, Henry; Ikegawa, Yasuyo; Peisach, Ezra; Piehl, Dennis W.; Smith, James; Tanweer, Ahsan; Varadi, Mihaly; Westbrook, John D.; Young, Jasmine Y.; Patwardhan, Ardan; Morris, Kyle L.; Hoch, Jeffrey C.; Kurisu, Genji; Velankar, Sameer; Burley, Stephen K.
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RCSB Protein Data Bank (RCSB.org): delivery of experimentally-determined PDB structures alongside one million computed structure models of proteins from artificial intelligence/machine learning
err2022-11-24
err294
errOAAI
errBurley, Stephen K.; Bhikadiya, Charmi; Bi, Chunxiao; Bittrich, Sebastian; Chao, Henry; Chen, Li; Craig, Paul A.; Crichlow, Gregg, V; Dalenberg, Kenneth; Duarte, Jose M.; Dutta, Shuchismita; Fayazi, Maryam; Feng, Zukang; Flatt, Justin W.; Ganesan, Sai; Ghosh, Sutapa; Goodsell, David S.; Green, Rachel Kramer; Guranovic, Vladimir; Henry, Jeremy; Hudson, Brian P.; Khokhriakov, Igor; Lawson, Catherine L.; Liang, Yuhe; Lowe, Robert; Peisach, Ezra; Persikova, Irina; Piehl, Dennis W.; Rose, Yana; Sali, Andrej; Segura, Joan; Sekharan, Monica; Shao, Chenghua; Vallat, Brinda; Voigt, Maria; Webb, Ben; Westbrook, John D.; Whetstone, Shamara; Young, Jasmine Y.; Zalevsky, Arthur; Zardecki, Christine
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Evolution of the SARS-CoV-2 proteome in three dimensions (3D) during the first 6 months of the COVID-19 pandemic
err2021-10-09
err28
errOAAI
errLubin, Joseph H.; Zardecki, Christine; Dolan, Elliott M.; Lu, Changpeng; Shen, Zhuofan; Dutta, Shuchismita; Westbrook, John D.; Hudson, Brian P.; Goodsell, David S.; Williams, Jonathan K.; Voigt, Maria; Sarma, Vidur; Xie, Lingjun; Venkatachalam, Thejasvi; Arnold, Steven; Alvarado, Luz Helena Alfaro; Catalfano, Kevin; Khan, Aaliyah; McCarthy, Erika; Staggers, Sophia; Tinsley, Brea; Trudeau, Alan; Singh, Jitendra; Whitmore, Lindsey; Zheng, Helen; Benedek, Matthew; Currier, Jenna; Dresel, Mark; Duvvuru, Ashish; Dyszel, Britney; Fingar, Emily; Hennen, Elizabeth M.; Kirsch, Michael; Khan, Ali A.; Labrie-Cleary, Charlotte; Laporte, Stephanie; Lenkeit, Evan; Martin, Kailey; Orellana, Marilyn; de la Campa, Melanie Ortiz-Alvarez; Paredes, Isaac; Wheeler, Baleigh; Rupert, Allison; Sam, Andrew; See, Katherine; Zapata, Santiago Soto; Craig, Paul A.; Hall, Bonnie L.; Jiang, Jennifer; Koeppe, Julia R.; Mills, Stephen A.; Pikaart, Michael J.; Roberts, Rebecca; Bromberg, Yana; Hoyer, J. Steen; Duffy, Siobain; Tischfield, Jay; Ruiz, Francesc X.; Arnold, Eddy; Baum, Jean; Sandberg, Jesse; Brannigan, Grace; Khare, Sagar D.; Burley, Stephen K.
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Modernized uniform representation of carbohydrate molecules in the Protein Data Bank
err2021-05-08
err20
errOAAI
errShao, Chenghua; Feng, Zukang; Westbrook, John D.; Peisach, Ezra; Berrisford, John; Ikegawa, Yasuyo; Kurisu, Genji; Velankar, Sameer; Burley, Stephen K.; Young, Jasmine Y.
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RCSB Protein Data Bank: powerful new tools for exploring 3D structures of biological macromolecules for basic and applied research and education in fundamental biology, biomedicine, biotechnology, bioengineering and energy sciences
err2020-11-19
err994
errOAAI
errBurley, Stephen K.; Bhikadiya, Charmi; Bi, Chunxiao; Bittrich, Sebastian; Chen, Li; Crichlow, Gregg, V; Christie, Cole H.; Dalenberg, Kenneth; Di Costanzo, Luigi; Duarte, Jose M.; Dutta, Shuchismita; Feng, Zukang; Ganesan, Sai; Goodsell, David S.; Ghosh, Sutapa; Green, Rachel Kramer; Guranovic, Vladimir; Guzenko, Dmytro; Hudson, Brian P.; Lawson, Catherine L.; Liang, Yuhe; Lowe, Robert; Namkoong, Harry; Peisach, Ezra; Persikova, Irina; Randle, Chris; Rose, Alexander; Rose, Yana; Sali, Andrej; Segura, Joan; Sekharan, Monica; Shao, Chenghua; Tao, Yi-Ping; Voigt, Maria; Westbrook, John D.; Young, Jasmine Y.; Zardecki, Christine; Zhuravleva, Marina
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Impact of the Protein Data Bank on antineoplastic approvals
err2020-05-01
err29
errOAAI
errWestbrook, John D.; Soskind, Rose; Hudson, Brian P.; Burley, Stephen K.
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Collaborating With Glycoscience Community To Improve Data Representation of Carbohydrates in the Protein Data Bank
err2020-04-20
err2
errOAAI
errZardecki, Christine; Shao, Chenghua; Feng, Zukang; Westbrook, John; Persikova, Irina; Burley, Stephen; Young, Jasmine
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Archiving of Integrative/Hybrid Structural Models
err2019-02-01
err0
errOAAI
errBerman, Helen; Vallat, Brinda; Westbrook, John; Webb, Benjamin; Sali, Andrej
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RCSB Protein Data Bank: biological macromolecular structures enabling research and education in fundamental biology, biomedicine, biotechnology and energy
err2018-10-24
err852
errOAAI
errBurley, Stephen K.; Berman, Helen M.; Bhikadiya, Charmi; Bi, Chunxiao; Chen, Li; Di Costanzo, Luigi; Christie, Cole; Dalenberg, Ken; Duarte, Jose M.; Dutta, Shuchismita; Feng, Zukang; Ghosh, Sutapa; Goodsell, David S.; Green, Rachel K.; Guranovic, Vladimir; Guzenko, Dmytro; Hudson, Brian P.; Kalro, Tara; Liang, Yuhe; Lowe, Robert; Namkoong, Harry; Peisach, Ezra; Periskova, Irina; Prlic, Andreas; Randle, Chris; Rose, Alexander; Rose, Peter; Sala, Raul; Sekharan, Monica; Shao, Chenghua; Tan, Lihua; Tao, Yi-Ping; Valasatava, Yana; Voigt, Maria; Westbrook, John; Woo, Jesse; Yang, Huanwang; Young, Jasmine; Zhuravleva, Marina; Zardecki, Christine
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Protein Data Bank: the single global archive for 3D macromolecular structure data
err2018-10-24
err682
errOAAI
errBurley, Stephen K.; Berman, Helen M.; Bhikadiya, Charmi; Bi, Chunxiao; Chen, Li; Di Costanzo, Luigi; Christie, Cole; Duarte, Jose M.; Dutta, Shuchismita; Feng, Zukang; Ghosh, Sutapa; Goodsell, David S.; Green, Rachel Kramer; Guranovic, Vladimir; Guzenko, Dmytro; Hudson, Brian P.; Liang, Yuhe; Lowe, Robert; Peisach, Ezra; Periskova, Irina; Randle, Chris; Rose, Alexander; Sekharan, Monica; Shao, Chenghua; Tao, Yi-Ping; Valasatava, Yana; Voigt, Maria; Westbrook, John; Young, Jasmine; Zardecki, Christine; Zhuravleva, Marina; Kurisu, Genji; Nakamura, Haruki; Kengaku, Yumiko; Cho, Hasumi; Sato, Junko; Kim, Ju Yaen; Ikegawa, Yasuyo; Nakagawa, Atsushi; Yamashita, Reiko; Kudou, Takahiro; Bekker, Gert-Jan; Suzuki, Hirofumi; Iwata, Takeshi; Yokochi, Masashi; Kobayashi, Naohiro; Fujiwara, Toshimichi; Velankar, Sameer; Kleywegt, Gerard J.; Anyango, Stephen; Armstrong, David R.; Berrisford, John M.; Conroy, Matthew J.; Dana, Jose M.; Deshpande, Mandar; Gane, Paul; Gaborova, Romana; Gupta, Deepti; Gutmanas, Aleksandras; Koca, Jaroslav; Mak, Lora; Mir, Saqib; Mukhopadhyay, Abhik; Nadzirin, Nurul; Nair, Sreenath; Patwardhan, Ardan; Paysan-Lafosse, Typhaine; Pravda, Lukas; Salih, Osman; Sehnal, David; Varadi, Mihaly; Varekova, Radka; Markley, John L.; Hoch, Jeffrey C.; Romero, Pedro R.; Baskaran, Kumaran; Maziuk, Dimitri; Ulrich, Eldon L.; Wedell, Jonathan R.; Yao, Hongyang; Livny, Miron; Ioannidis, Yannis E.
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Worldwide Protein Data Bank biocuration supporting open access to high-quality 3D structural biology data
err2018-02-07
err40
errOAAI
errYoung, Jasmine Y.; Westbrook, John D.; Feng, Zukang; Peisach, Ezra; Persikova, Irina; Sala, Raul; Sen, Sanchayita; Berrisford, John M.; Swaminathan, G. Jawahar; Oldfield, Thomas J.; Gutmanas, Aleksandras; Igarashi, Reiko; Armstrong, David R.; Baskaran, Kumaran; Chen, Li; Chen, Minyu; Clark, Alice R.; Di Costanzo, Luigi; Dimitropoulos, Dimitris; Gao, Guanghua; Ghosh, Sutapa; Gore, Swanand; Guranovic, Vladimir; Hendrickx, Pieter M. S.; Hudson, Brian P.; Ikegawa, Yasuyo; Kengaku, Yumiko; Lawson, Catherine L.; Liang, Yuhe; Mak, Lora; Mukhopadhyay, Abhik; Narayanan, Buvaneswari; Nishiyama, Kayoko; Patwardhan, Ardan; Sahni, Gaurav; Sanz-Garcia, Eduardo; Sato, Junko; Sekharan, Monica R.; Shao, Chenghua; Smart, Oliver S.; Tan, Lihua; van Ginkel, Glen; Yang, Huanwang; Zhuravleva, Marina A.; Markley, John L.; Nakamura, Haruki; Kurisu, Genji; Kleywegt, Gerard J.; Velankar, Sameer; Berman, Helen M.; Burley, Stephen K.
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A Data Dictionary and Prototype Deposition System for Archiving Integrative/Hybrid Models
err2018-02-01
err0
errOAAI
errVallat, Brinda; Webb, Benjamin; Westbrook, John; Sali, Andrej; Berman, Helen
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The RCSB protein data bank: integrative view of protein, gene and 3D structural information
err2016-01-01
err785
errOAAI
errRose, Peter W.; Prlic, Andreas; Altunkaya, Ali; Bi, Chunxiao; Bradley, Anthony R.; Christie, Cole H.; Di Costanzo, Luigi; Duarte, Jose M.; Dutta, Shuchismita; Feng, Zukang; Green, Rachel Kramer; Goodsell, David S.; Hudson, Brian; Kalro, Tara; Lowe, Robert; Peisach, Ezra; Randle, Christopher; Rose, Alexander S.; Shao, Chenghua; Tao, Yi-Ping; Valasatava, Yana; Voigt, Maria; Westbrook, John D.; Woo, Jesse; Yang, Huangwang; Young, Jasmine Y.; Zardecki, Christine; Berman, Helen M.; Burley, Stephen K.
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EMDataBank unified data resource for 3DEM
err2015-11-17
err200
errOAAI
errLawson, Catherine L.; Patwardhan, Ardan; Baker, Matthew L.; Hryc, Corey; Garcia, Eduardo Sanz; Hudson, Brian P.; Lagerstedt, Ingvar; Ludtke, Steven J.; Pintilie, Grigore; Sala, Raul; Westbrook, John D.; Berman, Helen M.; Kleywegt, Gerard J.; Chiu, Wah
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NMR Exchange Format: a unified and open standard for representation of NMR restraint data
err2015-06-03
err41
errOAAI
errGutmanas, Aleksandras; Adams, Paul D.; Bardiaux, Benjamin; Berman, Helen M.; Case, David A.; Fogh, Rasmus H.; Guentert, Peter; Hendrickx, Pieter M. S.; Herrmann, Torsten; Kleywegt, Gerard J.; Kobayashi, Naohiro; Lange, Oliver F.; Markley, John L.; Montelione, Gaetano T.; Nilges, Michael; Ragan, Timothy J.; Schwieters, Charles D.; Tejero, Roberto; Ulrich, Eldon L.; Velankar, Sameer; Vranken-, Wim F.; Wedell, Jonathan R.; Westbrook, John; Wishart, David S.; Vuister, Geerten W.
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The RCSB Protein Data Bank: views of structural biology for basic and applied research and education
err2014-11-26
err438
errOAAI
errRose, Peter W.; Prlic, Andreas; Bi, Chunxiao; Bluhm, Wolfgang F.; Christie, Cole H.; Dutta, Shuchismita; Green, Rachel Kramer; Goodsell, David S.; Westbrook, John D.; Woo, Jesse; Young, Jasmine; Zardecki, Christine; Berman, Helen M.; Bourne, Philip E.; Burley, Stephen K.
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Improving the Representation of Peptide-Like Inhibitor and Antibiotic Molecules in the Protein Data Bank
err2014-03-25
err28
errOAAI
errDutta, Shuchismita; Dimitropoulos, Dimitris; Feng, Zukang; Persikova, Irina; Sen, Sanchayita; Shao, Chenghua; Westbrook, John; Young, Jasmine; Zhuravleva, Marina A.; Kleywegt, Gerard J.; Berman, Helen M.
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Chemical annotation of small and peptide-like molecules at the Protein Data Bank
err2013-11-28
err11
errOAAI
errYoung, Jasmine Y.; Feng, Zukang; Dimitropoulos, Dimitris; Sala, Raul; Westbrook, John; Zhuravleva, Marina; Shao, Chenghua; Quesada, Martha; Peisach, Ezra; Berman, Helen M.
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The Nucleic Acid Database: new features and capabilities
err2013-10-31
err172
errOAAI
errNarayanan, Buvaneswari Coimbatore; Westbrook, John; Ghosh, Saheli; Petrov, Anton I.; Sweeney, Blake; Zirbel, Craig L.; Leontis, Neocles B.; Berman, Helen M.
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