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Alexander Rose

Rutgers Cancer Institute of New Jersey

24H-index
100Paper Count
9.6KCitation Count
Published Papers 29
Publication Date
RCSB Protein Data Bank: Delivering integrative structures alongside experimental structures and computed structure models
err2025-11-01
err1
PREAI
errVallat, Brinda; Rose, Yana; Piehl, Dennis W.; Duarte, Jose M.; Bittrich, Sebastian; Bi, Chunxiao; Segura, Joan; Zalevsky, Arthur; Sekharan, Monica R.; Webb, Benjamin M.; Bhikadiya, Charmi; Voigt, Maria; Henry, Jeremy; Chao, Henry; Pingale, Aditya; Raymond, David; Sagendorf, Jared; Peisach, Ezra; Feng, Zukang; Guranovic, Vladimir; Smith, James; Rose, Alexander S.; Young, Jasmine Y.; Berman, Helen M.; Sali, Andrej; Burley, Stephen K.
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Visualizing and analyzing 3D biomolecular structures using Mol* at RCSB.org: Influenza A H5N1 virus proteome case study
err2025-03-18
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errOAAI
errBittrich, Sebastian; Rose, Alexander S.; Sehnal, David; Duarte, Jose M.; Rose, Yana; Segura, Joan; Piehl, Dennis W.; Vallat, Brinda; Shao, Chenghua; Bhikadiya, Charmi; Liang, Jesse; Ma, Mark; Goodsell, David S.; Burley, Stephen K.; Dutta, Shuchismita
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Mol* Volumes and Segmentations: visualization and interpretation of cell imaging data alongside macromolecular structure data and biological annotations
err2023-05-17
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errOAAI
errChareshneu, Aliaksei; Midlik, Adam; Ionescu, Crina-Maria; Rose, Alexander; Horsky, Vladimir; Cantara, Alessio; Svobodova, Radka; Berka, Karel; Sehnal, David
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MDsrv: visual sharing and analysis of molecular dynamics simulations
err2022-05-26
err7
errOAAI
errKampfrath, Michelle; Staritzbichler, Rene; Hernandez, Guillermo Perez; Rose, Alexander S.; Tiemann, Johanna K. S.; Scheuermann, Gerik; Wiegreffe, Daniel; Hildebrand, Peter W.
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Mol* Viewer: modern web app for 3D visualization and analysis of large biomolecular structures
err2021-05-06
err587
errOAAI
errSehnal, David; Bittrich, Sebastian; Deshpande, Mandar; Svobodova, Radka; Berka, Karel; Bazgier, Vaclav; Velankar, Sameer; Burley, Stephen K.; Koca, Jaroslav; Rose, Alexander S.
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RCSB Protein Data Bank: powerful new tools for exploring 3D structures of biological macromolecules for basic and applied research and education in fundamental biology, biomedicine, biotechnology, bioengineering and energy sciences
err2020-11-19
err994
errOAAI
errBurley, Stephen K.; Bhikadiya, Charmi; Bi, Chunxiao; Bittrich, Sebastian; Chen, Li; Crichlow, Gregg, V; Christie, Cole H.; Dalenberg, Kenneth; Di Costanzo, Luigi; Duarte, Jose M.; Dutta, Shuchismita; Feng, Zukang; Ganesan, Sai; Goodsell, David S.; Ghosh, Sutapa; Green, Rachel Kramer; Guranovic, Vladimir; Guzenko, Dmytro; Hudson, Brian P.; Lawson, Catherine L.; Liang, Yuhe; Lowe, Robert; Namkoong, Harry; Peisach, Ezra; Persikova, Irina; Randle, Chris; Rose, Alexander; Rose, Yana; Sali, Andrej; Segura, Joan; Sekharan, Monica; Shao, Chenghua; Tao, Yi-Ping; Voigt, Maria; Westbrook, John D.; Young, Jasmine Y.; Zardecki, Christine; Zhuravleva, Marina
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Bringing Molecular Dynamics Simulation Data into View
err2019-11-01
err158
errOAAI
errHildebrand, Peter W.; Rose, Alexander S.; Tiemann, Johanna K. S.
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RCSB Protein Data Bank: biological macromolecular structures enabling research and education in fundamental biology, biomedicine, biotechnology and energy
err2018-10-24
err852
errOAAI
errBurley, Stephen K.; Berman, Helen M.; Bhikadiya, Charmi; Bi, Chunxiao; Chen, Li; Di Costanzo, Luigi; Christie, Cole; Dalenberg, Ken; Duarte, Jose M.; Dutta, Shuchismita; Feng, Zukang; Ghosh, Sutapa; Goodsell, David S.; Green, Rachel K.; Guranovic, Vladimir; Guzenko, Dmytro; Hudson, Brian P.; Kalro, Tara; Liang, Yuhe; Lowe, Robert; Namkoong, Harry; Peisach, Ezra; Periskova, Irina; Prlic, Andreas; Randle, Chris; Rose, Alexander; Rose, Peter; Sala, Raul; Sekharan, Monica; Shao, Chenghua; Tan, Lihua; Tao, Yi-Ping; Valasatava, Yana; Voigt, Maria; Westbrook, John; Woo, Jesse; Yang, Huanwang; Young, Jasmine; Zhuravleva, Marina; Zardecki, Christine
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Protein Data Bank: the single global archive for 3D macromolecular structure data
err2018-10-24
err682
errOAAI
errBurley, Stephen K.; Berman, Helen M.; Bhikadiya, Charmi; Bi, Chunxiao; Chen, Li; Di Costanzo, Luigi; Christie, Cole; Duarte, Jose M.; Dutta, Shuchismita; Feng, Zukang; Ghosh, Sutapa; Goodsell, David S.; Green, Rachel Kramer; Guranovic, Vladimir; Guzenko, Dmytro; Hudson, Brian P.; Liang, Yuhe; Lowe, Robert; Peisach, Ezra; Periskova, Irina; Randle, Chris; Rose, Alexander; Sekharan, Monica; Shao, Chenghua; Tao, Yi-Ping; Valasatava, Yana; Voigt, Maria; Westbrook, John; Young, Jasmine; Zardecki, Christine; Zhuravleva, Marina; Kurisu, Genji; Nakamura, Haruki; Kengaku, Yumiko; Cho, Hasumi; Sato, Junko; Kim, Ju Yaen; Ikegawa, Yasuyo; Nakagawa, Atsushi; Yamashita, Reiko; Kudou, Takahiro; Bekker, Gert-Jan; Suzuki, Hirofumi; Iwata, Takeshi; Yokochi, Masashi; Kobayashi, Naohiro; Fujiwara, Toshimichi; Velankar, Sameer; Kleywegt, Gerard J.; Anyango, Stephen; Armstrong, David R.; Berrisford, John M.; Conroy, Matthew J.; Dana, Jose M.; Deshpande, Mandar; Gane, Paul; Gaborova, Romana; Gupta, Deepti; Gutmanas, Aleksandras; Koca, Jaroslav; Mak, Lora; Mir, Saqib; Mukhopadhyay, Abhik; Nadzirin, Nurul; Nair, Sreenath; Patwardhan, Ardan; Paysan-Lafosse, Typhaine; Pravda, Lukas; Salih, Osman; Sehnal, David; Varadi, Mihaly; Varekova, Radka; Markley, John L.; Hoch, Jeffrey C.; Romero, Pedro R.; Baskaran, Kumaran; Maziuk, Dimitri; Ulrich, Eldon L.; Wedell, Jonathan R.; Yao, Hongyang; Livny, Miron; Ioannidis, Yannis E.
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FragFit: a web-application for interactive modeling of protein segments into cryo-EM density maps
err2018-05-21
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errOAAI
errTiemann, Johanna K. S.; Rose, Alexander S.; Ismer, Jochen; Darvish, Mitra D.; Hilal, Tarek; Spahn, Christian M. T.; Hildebrand, Peter W.
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The arrestin-1 finger loop interacts with two distinct conformations of active rhodopsin
err2018-03-01
err10
errOAAI
errElgeti, Matthias; Kazmin, Roman; Rose, Alexander S.; Szczepek, Michal; Hildebrand, Peter W.; Bartl, Franz J.; Scheerer, Patrick; Hofmann, Klaus Peter
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Interactive 3D Macromolecular Structure Data Mining with MolQL and Litemol Suite
err2018-02-01
err0
errOAAI
errSehnal, David; Deshpande, Mandar; Rose, Alexander; Pravda, Lukas; Midlik, Adam; Varekova, Radka Svobodova; Mir, Saqib; Berka, Karel; Velankar, Sameer; Koca, Jaroslav
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Molql: Towards a Common General Purpose Molecular Query Language
err2018-02-01
err2
errOAAI
errRose, Alexander S.; Sehnal, David; Bliven, Spencer; Burley, Stephen K.; Velankar, Sameer
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MDsrv: viewing and sharing molecular dynamics simulations on the web
err2017-12-01
err36
PREAI
errTiemann, Johanna K. S.; Guixa-Gonzalez, Ramon; Hildebrand, Peter W.; Rose, Alexander S.
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SL2: an interactive webtool for modeling of missing segments in proteins
err2016-04-21
err25
errOAAI
errIsmer, Jochen; Rose, Alexander S.; Tiemann, Johanna K. S.; Goede, Andrean; Preissner, Robert; Hildebrand, Peter W.
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The RCSB protein data bank: integrative view of protein, gene and 3D structural information
err2016-01-01
err785
errOAAI
errRose, Peter W.; Prlic, Andreas; Altunkaya, Ali; Bi, Chunxiao; Bradley, Anthony R.; Christie, Cole H.; Di Costanzo, Luigi; Duarte, Jose M.; Dutta, Shuchismita; Feng, Zukang; Green, Rachel Kramer; Goodsell, David S.; Hudson, Brian; Kalro, Tara; Lowe, Robert; Peisach, Ezra; Randle, Christopher; Rose, Alexander S.; Shao, Chenghua; Tao, Yi-Ping; Valasatava, Yana; Voigt, Maria; Westbrook, John D.; Woo, Jesse; Yang, Huangwang; Young, Jasmine Y.; Zardecki, Christine; Berman, Helen M.; Burley, Stephen K.
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The Activation Pathway of Human Rhodopsin in Comparison to Bovine Rhodopsin
err2015-08-01
err16
errOAAI
errKazmin, Roman; Rose, Alexander; Szczepek, Michal; Elgeti, Matthias; Ritter, Eglof; Piechnick, Ronny; Hofmann, Klaus Peter; Scheerer, Patrick; Hildebrand, Peter W.; Bartl, Franz J.
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NGL Viewer: a web application for molecular visualization
err2015-04-29
err355
errOAAI
errRose, Alexander S.; Hildebrand, Peter W.
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Crystal structure of a common GPCR-binding interface for G protein and arrestin
err2014-09-10
err154
errOAAI
errSzczepek, Michal; Beyriere, Florent; Hofmann, Klaus Peter; Elgeti, Matthias; Kazmin, Roman; Rose, Alexander; Bartl, Franz J.; von Stetten, David; Heck, Martin; Sommer, Martha E.; Hildebrand, Peter W.; Scheerer, Patrick
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