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J

Johannes Rainer

european academy of bozen-bolzano

39H-index
144Paper Count
6.8KCitation Count
Published Papers 53
Publication Date
xcms in Peak Form: Now Anchoring a Complete Metabolomics Data Preprocessing and Analysis Software Ecosystem
err2025-12-01
err0
PREAI
errLouail, Philippine; Brunius, Carl; Garcia-Aloy, Mar; Kumler, William; Storz, Norman; Stanstrup, Jan; Treutler, Hendrik; Vangeenderhuysen, Pablo; Witting, Michael; Neumann, Steffen; Rainer, Johannes
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Author Correction: A universal language for finding mass spectrometry data patterns
err2025-08-08
err0
errOAAI
errTito Damiani; Alan K. Jarmusch; Allegra T. Aron; Daniel Petras; Vanessa V. Phelan; Haoqi Nina Zhao; Wout Bittremieux; Deepa D. Acharya; Mohammed M. A. Ahmed; Anelize Bauermeister; Matthew J. Bertin; Paul D. Boudreau; Ricardo M. Borges; Benjamin P. Bowen; Christopher J. Brown; Fernanda O. Chagas; Kenneth D. Clevenger; Mario S. P. Correia; William J. Crandall; Max Crüsemann; Eoin Fahy; Oliver Fiehn; Neha Garg; William H. Gerwick; Jeffrey R. Gilbert; Daniel Globisch; Paulo Wender P. Gomes; Steffen Heuckeroth; C. Andrew James; Scott A. Jarmusch; Sarvar A. Kakhkhorov; Kyo Bin Kang; Nikolas Kessler; Roland D. Kersten; Hyunwoo Kim; Riley D. Kirk; Oliver Kohlbacher; Eftychia E. Kontou; Ken Liu; Itzel Lizama-Chamu; Gordon T. Luu; Tal Luzzatto Knaan; Helena Mannochio-Russo; Michael T. Marty; Yuki Matsuzawa; Andrew C. McAvoy; Laura-Isobel McCall; Osama G. Mohamed; Omri Nahor; Heiko Neuweger; Timo H. J. Niedermeyer; Kozo Nishida; Trent R. Northen; Kirsten E. Overdahl; Johannes Rainer; Raphael Reher; Elys Rodriguez; Timo T. Sachsenberg; Laura M. Sanchez; Robin Schmid; Cole Stevens; Shankar Subramaniam; Zhenyu Tian; Ashootosh Tripathi; Hiroshi Tsugawa; Justin J. J. van der Hooft; Andrea Vicini; Axel Walter; Tilmann Weber; Quanbo Xiong; Tao Xu; Tomáš Pluskal; Pieter C. Dorrestein; Mingxun Wang
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Cohort Profile: the Cooperative Health Research in South Tyrol study
err2025-05-28
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errOAAI
errLundin, Rebecca; Melotti, Roberto; Barin, Laura; Goegele, Martin; Lombardo, Stefano; Fanolla, Antonio; Zuech, Paola; Rainer, Johannes; Emmert, David; Fuchsberger, Christian; Mascalzoni, Deborah; De Grandi, Alessandro; Domingues, Francisco S.; Hicks, Andrew A.; Pramstaller, Peter P.; Pattaro, Cristian
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Automated Integration and Quality Assessment of Chromatographic Peaks in LC-MS-Based Metabolomics and Lipidomics Using TARDIS
err2025-04-29
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PREAI
errVangeenderhuysen, Pablo; Vynck, Matthijs; Pomian, Beata; De Windt, Kimberly; Callemeyn, Emile; De Paepe, Ellen; De Commer, Lindsey; Raes, Jeroen; Nawrot, Tim; Rainer, Johannes; Hemeryck, Lieselot Y.; Vanhaecke, Lynn
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Extensive modulation of the circulating blood proteome by hormonal contraceptive use across two population studies
err2025-04-22
err1
errOAAI
errDordevic, Nikola; Dierks, Clemens; Hantikainen, Essi; Farztdinov, Vadim; Amari, Fatma; Hernandes, Vinicius Verri; De Grandi, Alessandro; Domingues, Francisco S.; Shomroni, Orr; Textoris-Taube, Kathrin; Bahr, Vivien; Schmid, Hannah; Demuth, Ilja; Kurth, Florian; Muelleder, Michael; Pramstaller, Peter Paul; Rainer, Johannes; Ralser, Markus
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LC-MS-Based Global Metabolic Profiles of Alternative Blood Specimens Collected by Microsampling
err2025-01-16
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errOAAI
errThaitumu, Marlene N.; De Sa e Silva, Daniel Marques; Louail, Philippine; Rainer, Johannes; Avgerinou, Glykeria; Petridou, Anatoli; Mougios, Vassilis; Theodoridis, Georgios; Gika, Helen
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Metabolite and protein associations with general health in the population-based CHRIS study
err2024-11-04
err0
errOAAI
errHantikainen, Essi; Weichenberger, Christian X.; Dordevic, Nikola; Verri Hernandes, Vinicius; Foco, Luisa; Goegele, Martin; Melotti, Roberto; Pattaro, Cristian; Ralser, Markus; Amari, Fatma; Farztdinov, Vadim; Muelleder, Michael; Pramstaller, Peter P.; Rainer, Johannes; Domingues, Francisco S.
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VAMS-Based Blood Capillary Sampling for Mass Spectrometry-Based Human Metabolomics Studies
err2023-01-18
err15
errOAAI
errVolani, Chiara; Malfertheiner, Christa; Caprioli, Giulia; Fjelstrup, Soren; Pramstaller, Peter P.; Rainer, Johannes; Paglia, Giuseppe
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Whole Exome Sequencing Enhanced Imputation Identifies 85 Metabolite Associations in the Alpine CHRIS Cohort
err2022-06-29
err6
errOAAI
errKonig, Eva; Rainer, Johannes; Hernandes, Vinicius Verri; Paglia, Giuseppe; Del Greco, Fabiola M.; Bottigliengo, Daniele; Yin, Xianyong; Chan, Lap Sum; Teumer, Alexander; Pramstaller, Peter P.; Locke, Adam E.; Fuchsberger, Christian
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Proposed nomenclature for Pseudallescheria, Scedosporium and related genera (vol 67, pg 1, 2014)
err2022-03-10
err0
errOAAI
errLackner, Michaela; de Hoog, G. Sybren; Yang, Liyue; Ferreira Moreno, Leandro; Ahmed, Sarah A.; Andreas, Fritz; Kaltseis, Josef; Nagl, Markus; Lass-Floerl, Cornelia; Risslegger, Brigitte; Rambach, Guenter; Speth, Cornelia; Robert, Vincent; Buzina, Walter; Chen, Sharon; Bouchara, Jean-Philippe; Cano-Lira, Jose F.; Guarro, Josep; Gene, Josepa; Fernandez Silva, Fabiola; Haido, Rosa; Haase, Gerhard; Havlicek, Vladimir; Garcia-Hermoso, Dea; Meis, Jacques F.; Hagen, Ferry; Kirchmair, Martin; Rainer, Johannes; Schwabenbauer, Katharina; Zoderer, Mirjam; Meyer, Wieland; Gilgado, Felix; Schwabenbauer, Katharina; Vicente, Vania A.; Pieckova, Elena; Regenermel, Monika; Rath, Peter-Michael; Steinmann, Joerg; de Alencar, Xisto Wellington; Symoens, Francoise; Tintelnot, Kathrin; Ulfig, Krzysztof; Velegraki, Aristea; Tortorano, Anna Maria; Giraud, Sandrine; Mina, Sara; Rigler-Hohenwarter, Kinga; Hernando, Fernando L.; Ramirez-Garcia, Andoni; Pellon, Aize; Kaur, Jashanpreet; Bergter, Eliana Barreto; de Meirelles, Jardel Vieira; da Silva, Ingrid Dutra; Delhaes, Laurence; Alastruey-Izquierdo, Ana; Li, Ruo-yu; Lu, Qiaoyun; Moussa, Tarek; Almaghrabi, Omar; Al-Zahrani, Hassan; Okada, Gen; Deng, Shuwen; Liao, Wangqing; Zeng, Jingsi; Issakainen, Jouni; Liporagi Lopes, Livia Cristina
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Age, Sex, Body Mass Index, Diet and Menopause Related Metabolites in a Large Homogeneous Alpine Cohort
err2022-02-24
err18
errOAAI
errHernandes, Vinicius Verri; Dordevic, Nikola; Hantikainen, Essi Marjatta; Sigurdsson, Baldur Bragi; Smarason, Sigurdur Vidir; Garcia-Larsen, Vanessa; Gogele, Martin; Caprioli, Giulia; Bozzolan, Ilaria; Pramstaller, Peter P.; Rainer, Johannes
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A Modular and Expandable Ecosystem for Metabolomics Data Annotation in R
err2022-02-11
err44
errOAAI
errRainer, Johannes; Vicini, Andrea; Salzer, Liesa; Stanstrup, Jan; Badia, Josep M.; Neumann, Steffen; Stravs, Michael A.; Hernandes, Vinicius Verri; Gatto, Laurent; Gibb, Sebastian; Witting, Michael
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Comprehensive Peak Characterization (CPC) in Untargeted LC-MS Analysis
err2022-02-02
err8
errOAAI
errPirttila, Kristian; Balgoma, David; Rainer, Johannes; Pettersson, Curt; Hedeland, Mikael; Brunius, Carl
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Ion identity molecular networking for mass spectrometry-based metabolomics in the GNPS environment
err2021-06-22
err138
errOAAI
errSchmid, Robin; Petras, Daniel; Nothias, Louis-Felix; Wang, Mingxun; Aron, Allegra T.; Jagels, Annika; Tsugawa, Hiroshi; Rainer, Johannes; Garcia-Aloy, Mar; Duhrkop, Kai; Korf, Ansgar; Pluskal, Tomas; Kamenik, Zdenek; Jarmusch, Alan K.; Caraballo-Rodriguez, Andres Mauricio; Weldon, Kelly C.; Nothias-Esposito, Melissa; Aksenov, Alexander A.; Bauermeister, Anelize; Orio, Andrea Albarracin; Grundmann, Carlismari O.; Vargas, Fernando; Koester, Irina; Gauglitz, Julia M.; Gentry, Emily C.; Hovelmann, Yannick; Kalinina, Svetlana A.; Pendergraft, Matthew A.; Panitchpakdi, Morgan; Tehan, Richard; Le Gouellec, Audrey; Aleti, Gajender; Russo, Helena Mannochio; Arndt, Birgit; Hubner, Florian; Hayen, Heiko; Zhi, Hui; Raffatellu, Manuela; Prather, Kimberly A.; Aluwihare, Lihini, I; Bocker, Sebastian; McPhail, Kerry L.; Humpf, Hans-Ulrich; Karst, Uwe; Dorrestein, Pieter C.
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Oxidant therapy improves adipogenic differentiation of adipose-derived stem cells in human wound healing
err2021-05-10
err7
errOAAI
errPloner, Christian; Rauchenwald, Tina; Connolly, Catherine E.; Joehrer, Karin; Rainer, Johannes; Seifarth, Christof; Hermann, Martin; Nagl, Markus; Lobenwein, Susanne; Wilflingseder, Doris; Cappellano, Giuseppe; Morandi, Evi M.; Pierer, Gerhard
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Metabolic Signature of Arrhythmogenic Cardiomyopathy
err2021-03-25
err7
errOAAI
errVolani, Chiara; Rainer, Johannes; Hernandes, Vinicius Veri; Meraviglia, Viviana; Pramstaller, Peter Paul; Smarason, Sigurdur Vidir; Pompilio, Giulio; Casella, Michela; Sommariva, Elena; Paglia, Giuseppe; Rossini, Alessandra
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Feature-based molecular networking in the GNPS analysis environment
err2020-08-24
err766
errOAAI
errNothias, Louis-Felix; Petras, Daniel; Schmid, Robin; Duehrkop, Kai; Rainer, Johannes; Sarvepalli, Abinesh; Protsyuk, Ivan; Ernst, Madeleine; Tsugawa, Hiroshi; Fleischauer, Markus; Aicheler, Fabian; Aksenov, Alexander A.; Alka, Oliver; Allard, Pierre-Marie; Barsch, Aiko; Cachet, Xavier; Caraballo-Rodriguez, Andres Mauricio; Da Silva, Ricardo R.; Dang, Tam; Garg, Neha; Gauglitz, Julia M.; Gurevich, Alexey; Isaac, Giorgis; Jarmusch, Alan K.; Kamenik, Zdenek; Kang, Kyo Bin; Kessler, Nikolas; Koester, Irina; Korf, Ansgar; Le Gouellec, Audrey; Ludwig, Marcus; Martin H., Christian; McCall, Laura-Isobel; McSayles, Jonathan; Meyer, Sven W.; Mohimani, Hosein; Morsy, Mustafa; Moyne, Oriane; Neumann, Steffen; Neuweger, Heiko; Nguyen, Ngoc Hung; Nothias-Esposito, Melissa; Paolini, Julien; Phelan, Vanessa V.; Pluskal, Tomas; Quinn, Robert A.; Rogers, Simon; Shrestha, Bindesh; Tripathi, Anupriya; van der Hooft, Justin J. J.; Vargas, Fernando; Weldon, Kelly C.; Witting, Michael; Yang, Heejung; Zhang, Zheng; Zubeil, Florian; Kohlbacher, Oliver; Boecker, Sebastian; Alexandrov, Theodore; Bandeira, Nuno; Wang, Mingxun; Dorrestein, Pieter C.
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The metaRbolomics Toolbox in Bioconductor and beyond
err2019-09-23
err65
errOAAI
errStanstrup, Jan; Broeckling, Corey D.; Helmus, Rick; Hoffmann, Nils; Mathe, Ewy; Naake, Thomas; Nicolotti, Luca; Peters, Kristian; Rainer, Johannes; Salek, Reza M.; Schulze, Tobias; Schymanski, Emma L.; Stravs, Michael A.; Thevenot, Etienne A.; Treutler, Hendrik; Weber, Ralf J. M.; Willighagen, Egon; Witting, Michael; Neumann, Steffen
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LAMTOR/Ragulator regulates lipid metabolism in macrophages and foam cell differentiation
err2019-08-26
err12
errOAAI
errLamberti, Giorgia; De Smet, Cedric H.; Angelova, Mihaela; Kremser, Leopold; Taub, Nicole; Herrmann, Caroline; Hess, Michael W.; Rainer, Johannes; Tancevski, Ivan; Schweigreiter, Ruerdiger; Kofler, Reinhard; Schmiedinger, Thomas; Vietor, Ilja; Trajanoski, Zlatko; Ejsing, Christer S.; Lindner, Herbert H.; Huber, Lukas A.; Stasyk, Taras
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