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J

Jonathan Barnoud

university of groningen

26H-index
81Paper Count
5.6KCitation Count
Published Papers 21
Publication Date
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Martinize2 and Vermouth provide a unified framework for molecular topology generation
errELIFE
IF0
err2025-11-20
err15
errOAAI
errKroon, Peter C.; Grunewald, Fabian; Barnoud, Jonathan; Van Tilburg, Marco; Brasnett, Chris; Souza, Paulo C. T.; Wassenaar, Tsjerk A.; Marrink, Siewert J.
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Martini 3 Coarse-Grained Force Field for Cholesterol
errJOURNAL OF CHEMICAL THEORY AND COMPUTATION
IF5.5
err2023-10-05
err26
errOAAI
errBorges-Araujo, Luis; Borges-Araujo, Ana C.; Ozturk, Tugba Nur; Ramirez-Echemendia, Daniel P.; Fabian, Balazs; Carpenter, Timothy S.; Thallmair, Sebastian; Barnoud, Jonathan; Ingolfsson, Helgi I.; Hummer, Gerhard; Tieleman, D. Peter; Marrink, Siewert J.; Souza, Paulo C. T.; Melo, Manuel N.
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Free energy along drug-protein binding pathways interactively sampled in virtual reality
errSCIENTIFIC REPORTS
IF3.9
err2023-10-04
err2
errOAAI
errDeeks, Helen M.; Zinovjev, Kirill; Barnoud, Jonathan; Mulholland, Adrian J.; van der Kamp, Marc W.; Glowacki, David R.
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The emerging potential of interactive virtual reality in drug discovery
errEXPERT OPINION ON DRUG DISCOVERY
IF4.9
err2022-06-02
err14
errOAAI
errWalters, Rebecca K.; Gale, Ella M.; Barnoud, Jonathan; Glowacki, David R.; Mulholland, Adrian J.
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Martini 3: a general purpose force field for coarse-grained molecular dynamics
errNATURE METHODS
IF32.1
err2021-03-29
err632
errOAAI
errSouza, Paulo C. T.; Alessandri, Riccardo; Barnoud, Jonathan; Thallmair, Sebastian; Faustino, Ignacio; Grunewald, Fabian; Patmanidis, Ilias; Abdizadeh, Haleh; Bruininks, Bart M. H.; Wassenaar, Tsjerk A.; Kroon, Peter C.; Melcr, Josef; Nieto, Vincent; Corradi, Valentina; Khan, Hanif M.; Domanski, Jan; Javanainen, Matti; Martinez-Seara, Hector; Reuter, Nathalie; Best, Robert B.; Vattulainen, Ilpo; Monticelli, Luca; Periole, Xavier; Tieleman, D. Peter; de Vries, Alex H.; Marrink, Siewert J.
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Interactive Molecular Dynamics in Virtual Reality Is an Effective Tool for Flexible Substrate and Inhibitor Docking to the SARS-CoV-2 Main Protease
errJOURNAL OF CHEMICAL INFORMATION AND MODELING
IF5.3
err2020-11-11
err34
errOAAI
errDeeks, Helen M.; Walters, Rebecca K.; Barnoud, Jonathan; Glowacki, David R.; Mulholland, Adrian J.
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errSave
Piezo1 Forms Specific, Functionally Important Interactions with Phosphoinositides and Cholesterol
errBIOPHYSICAL JOURNAL
IF3.1
err2020-10-01
err62
errOAAI
errBuyan, Amanda; Cox, Charles D.; Barnoud, Jonathan; Li, Jinyuan; Chan, Hannah S. M.; Martinac, Boris; Marrink, Siewert J.; Corry, Ben
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Resolving Donor-Acceptor Interfaces and Charge Carrier Energy Levels of Organic Semiconductors with Polar Side Chains
errADVANCED FUNCTIONAL MATERIALS
IF19
err2020-09-06
err31
errOAAI
errAlessandri, Riccardo; Sami, Selim; Barnoud, Jonathan; de Vries, Alex H.; Marrink, Siewert J.; Havenith, Remco W. A.
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errSave
Titratable Martini model for constant pH simulations
errJOURNAL OF CHEMICAL PHYSICS
IF3.1
err2020-07-13
err56
errOAAI
errGrunewald, Fabian; Souza, Paulo C. T.; Abdizadeh, Haleh; Barnoud, Jonathan; de Vries, Alex H.; Marrink, Siewert J.
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errSave
Coupling Coarse-Grained to Fine-Grained Models via Hamiltonian Replica Exchange
errJOURNAL OF CHEMICAL THEORY AND COMPUTATION
IF5.5
err2020-06-22
err12
errOAAI
errLiu, Yang; Pezeshkian, Weria; Barnoud, Jonathan; de Vries, Alex H.; Marrink, Siewert J.
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errSave
Capturing Choline-Aromatics Cation-π Interactions in the MARTINI Force Field
errJOURNAL OF CHEMICAL THEORY AND COMPUTATION
IF5.5
err2020-02-25
err41
errOAAI
errKhan, Hanif M.; Souza, Paulo C. T.; Thallmair, Sebastian; Barnoud, Jonathan; de Vries, Alex H.; Marrink, Siewert J.; Reuter, Nathalie
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errSave
Size-dependent aggregation of hydrophobic nanoparticles in lipid membranes
errNANOSCALE
IF5.1
err2020-01-01
err17
errOAAI
errLavagna, Enrico; Barnoud, Jonathan; Rossi, Giulia; Monticelli, Luca
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errSave
Gangliosides Destabilize Lipid Phase Separation in Multicomponent Membranes
errBIOPHYSICAL JOURNAL
IF3.1
err2019-10-01
err11
errOAAI
errLiu, Yang; Barnoud, Jonathan; Marrink, Siewert J.
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Sharing Data from Molecular Simulations
errJOURNAL OF CHEMICAL INFORMATION AND MODELING
IF5.3
err2019-09-17
err29
errOAAI
errAbraham, Mark; Apostolov, Rossen; Barnoud, Jonathan; Bauer, Paul; Blau, Christian; Bonvin, Alexandre M. J. J.; Chavent, Matthieu; Chodera, John; Condic-Jurkic, Karmen; Delemotte, Lucie; Grubmueller, Helmut; Howard, Rebecca J.; Jordan, E. Joseph; Lindahl, Erik; Ollila, O. H. Samuli; Selent, Jana; Smith, Daniel G. A.; Stansfeld, Phillip J.; Tiemann, Johanna K. S.; Trellet, Mikael; Woods, Christopher; Zhmurov, Artem
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Understanding Piezo1's Relationship with Lipids
errBIOPHYSICAL JOURNAL
IF3.1
err2019-02-01
err0
errOAAI
errBuyan, Amanda; Cox, Charles D.; Barnoud, Jonathan; Martinac, Boris; Marrink, Siewert-Jan; Corry, Ben
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errSave
New Automated and High-throughput Tools for the Martini Forcefield
errBIOPHYSICAL JOURNAL
IF3.1
err2018-02-01
err0
errOAAI
errKroon, Peter C.; Wassenaar, Tsjerk A.; Barnoud, Jonathan; Marrink, Siewert-Jan
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errSave
Alcohol Interactions with Lipid Bilayers
errMOLECULES
IF4.6
err2017-11-28
err27
errOAAI
errKondela, Tomas; Gallova, Jana; Hauss, Thomas; Barnoud, Jonathan; Marrink, Siewert-J.; Kucerka, Norbert
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Protein flexibility in the light of structural alphabets
errFRONTIERS IN MOLECULAR BIOSCIENCES
IF4
err2015-05-27
err78
errOAAI
errCraveur, Pierrick; Joseph, Agnel P.; Esque, Jeremy; Narwani, Tarun J.; Noel, Floriane; Shinada, Nicolas; Goguet, Matthieu; Leonard, Sylvain; Poulain, Pierre; Bertrand, Olivier; Faure, Guilhem; Rebehmed, Joseph; Ghozlane, Amine; Swapna, Lakshmipuram S.; Bhaskara, Ramachandra M.; Barnoud, Jonathan; Teletchea, Stephane; Jallu, Vincent; Cerny, Jiri; Schneider, Bohdan; Etchebest, Catherine; Srinivasan, Narayanaswamy; Gelly, Jean-Christophe; de Brevern, Alexandre G.
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C60 fullerene promotes lung monolayer collapse
errJOURNAL OF THE ROYAL SOCIETY INTERFACE
IF3.5
err2015-03-06
err34
errOAAI
errBarnoud, Jonathan; Urbini, Laura; Monticelli, Luca
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Lipid Membranes as Solvent for Carbon Nanoparticles
errBIOPHYSICAL JOURNAL
IF3.1
err2014-01-01
err0
errOAAI
errBarnoud, Jonathan; Rossi, Giulia; Monticelli, Luca
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Research Directions

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Co-authors
Cooperation Journals
刘洋 cover
刘洋 (Yang Liu)
H-index: 128 · Papers: 2.2K
‪
‪Siewert J. Marrink
H-index: 111 · Papers: 737
G
Gerhard Hummer
H-index: 110 · Papers: 730
S
Siewert J. Marrink
H-index: 108 · Papers: 88
D
D. Peter Tieleman
H-index: 92 · Papers: 449
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