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Alma Andersson

Royal Institute of Technology

21H-index
54Paper Count
4.7KCitation Count
Published Papers 14
Publication Date
Defining and benchmarking open problems in single-cell analysis
err2025-07-01
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errOAAI
errMalte D. Luecken; Scott Gigante; Daniel B. Burkhardt; Robrecht Cannoodt; Daniel C. Strobl; Nikolay S. Markov; Luke Zappia; Giovanni Palla; Wesley Lewis; Daniel Dimitrov; Michael E. Vinyard; D. S. Magruder; Michaela F. Mueller; Alma Andersson; Emma Dann; Qian Qin; Dominik J. Otto; Michal Klein; Olga Borisovna Botvinnik; Louise Deconinck; Kai Waldrant; Sai Nirmayi Yasa; Artur Szałata; Andrew Benz; Zhijian Li; Jonathan M. Bloom; Angela Oliveira Pisco; Julio Saez-Rodriguez; Drausin Wulsin; Luca Pinello; Yvan Saeys; Fabian J. Theis; Smita Krishnaswamy
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Spatial landmark detection and tissue registration with deep learning
err2024-03-04
err5
errOAAI
errEkvall, Markus; Bergenstrahle, Ludvig; Andersson, Alma; Czarnewski, Paulo; Olegard, Johannes; Kaell, Lukas; Lundeberg, Joakim
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Single-Cell and Spatial Transcriptomic Analysis of Human Skin Delineates Intercellular Communication and Pathogenic Cells
err2023-11-01
err8
PREAI
errThrane, Kim; Winge, Marten C. G.; Wang, Hongyu; Chen, Larry; Guo, Margaret G.; Andersson, Alma; Abalo, Xesus M.; Yang, Xue; Kim, Daniel S.; Longo, Sophia K.; Soong, Brian Y.; Meyers, Jordan M.; Reynolds, David L.; McGeever, Aaron; Demircioglu, Deniz; Hasson, Dan; Mirzazadeh, Reza; Rubin, Adam J.; Bae, Gordon H.; Karkanias, Jim; Rieger, Kerri; Lundeberg, Joakim; Ji, Andrew L.
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The spatial landscape of clonal somatic copy number alterations in benign and malignant prostate epithelia
err2023-06-02
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PREAI
errErickson, Andrew; He, Mengxiao; Berglund, Emelie; Marklund, Maja; Mirzazadeh, Reza; Schultz, Niklas; Kvastad, Linda; Andersson, Alma; Bergenstrahle, Ludvig; Bergenstrahle, Joseph; Larsson, Ludvig; Galicia, Leire Alonso; Shamikh, Alia; Basmaci, Elisa; De Stahl, Teresita Diaz; Rajakumar, Timothy; Doultsinos, Dimitrios; Thrane, Kim; Ji, Andrew L.; Khavari, Paul A.; Tarish, Firaz; Tanoglidi, Anna; Maaskola, Jonas; Colling, Richard; Mirtti, Tuomas; Hamdy, Freddie C.; Woodcock, Dan J.; Helleday, Thomas; Mills, Ian G.; Lamb, Alastair D.; Lundeberg, Joakim
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An integrated single cell and spatial transcriptomic map of human white adipose tissue
err2023-03-15
err40
errOAAI
errMassier, Lucas; Jalkanen, Jutta; Elmastas, Merve; Zhong, Jiawei; Wang, Tongtong; Nankam, Pamela A. Nono; Frendo-Cumbo, Scott; Backdahl, Jesper; Subramanian, Narmadha; Sekine, Takuya; Kerr, Alastair G.; Tseng, Ben T. P.; Laurencikiene, Jurga; Buggert, Marcus; Lourda, Magda; Kublickiene, Karolina; Bhalla, Nayanika; Andersson, Alma; Valsesia, Armand; Astrup, Arne; Blaak, Ellen E.; Stahl, Patrik L.; Viguerie, Nathalie; Langin, Dominique; Wolfrum, Christian; Blueher, Matthias; Ryden, Mikael; Mejhert, Niklas
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The spatial landscape of clonal somatic mutations in benign and malignant tissue
err2022-05-15
err0
PREAI
errErickson, Andrew; Berglund, Emelie; He, Mengxiao; Marklund, Maja; Mirzazadeh, Reza; Schultz, Niklas; Bergenstrahle, Ludvig; Kvastad, Linda; Andersson, Alma; Bergenstrahle, Joseph; Larsson, Ludvig; Shamikh, Alia; Basmaci, Elisa; De Stahl, Teresita Diaz; Rajakumar, Timothy; Thrane, Kim; Ji, Andrew L.; Khavari, Paul A.; Tarish, Firaz; Tanoglidi, Anna; Maaskola, Jonas; Colling, Richard; Mirtti, Tuomas; Hamdy, Freddie C.; Woodcock, Dan J.; Helleday, Thomas; Mills, Ian G.; Lamb, Alastair D.
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Spatial Transcriptomics to define transcriptional patterns of zonation and structural components in the mouse liver
err2021-12-02
err87
errOAAI
errHildebrandt, Franziska; Andersson, Alma; Saarenpaa, Sami; Larsson, Ludvig; Van Hul, Noemi; Kanatani, Sachie; Masek, Jan; Ellis, Ewa; Barragan, Antonio; Mollbrink, Annelie; Andersson, Emma R.; Lundeberg, Joakim; Ankarklev, Johan
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Genome-wide spatial expression profiling in formalin-fixed tissues
err2021-12-01
err45
errOAAI
errVillacampa, Eva Gracia; Larsson, Ludvig; Mirzazadeh, Reza; Kvastad, Linda; Andersson, Alma; Mollbrink, Annelie; Kokaraki, Georgia; Monteil, Vanessa; Schultz, Niklas; Appelberg, Karin Sofia; Montserrat, Nuria; Zhang, Haibo; Penninger, Josef M.; Miesbach, Wolfgang; Mirazimi, Ali; Carlson, Joseph; Lundeberg, Joakim
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Super-resolved spatial transcriptomics by deep data fusion
err2021-11-29
err66
errOAAI
errBergenstrahle, Ludvig; He, Bryan; Bergenstrahle, Joseph; Abalo, Xesus; Mirzazadeh, Reza; Thrane, Kim; Ji, Andrew L.; Andersson, Alma; Larsson, Ludvig; Stakenborg, Nathalie; Boeckxstaens, Guy; Khavari, Paul; Zou, James; Lundeberg, Joakim; Maaskola, Jonas
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Spatial mapping reveals human adipocyte subpopulations with distinct sensitivities to insulin (vol 33, pg 1869, 2021)
err2021-11-01
err10
errOAAI
errBackdahl, Jesper; Franzen, Lovisa; Massier, Lucas; Li, Qian; Jalkanen, Jutta; Gao, Hui; Andersson, Alma; Bhalla, Nayanika; Thorell, Anders; Ryden, Mikael; Stahl, Patrik L.; Mejhert, Niklas
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Spatial deconvolution of HER2-positive breast cancer delineates tumor-associated cell type interactions
err2021-10-14
err158
errOAAI
errAndersson, Alma; Larsson, Ludvig; Stenbeck, Linnea; Salmen, Fredrik; Ehinger, Anna; Wu, Sunny Z.; Al-Eryani, Ghamdan; Roden, Daniel; Swarbrick, Alex; Borg, Ake; Frisen, Jonas; Engblom, Camilla; Lundeberg, Joakim
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A single-cell and spatially resolved atlas of human breast cancers
err2021-09-06
err628
errOAAI
errWu, Sunny Z.; Al-Eryani, Ghamdan; Roden, Daniel Lee; Junankar, Simon; Harvey, Kate; Andersson, Alma; Thennavan, Aatish; Wang, Chenfei; Torpy, James R.; Bartonicek, Nenad; Wang, Taopeng; Larsson, Ludvig; Kaczorowski, Dominik; Weisenfeld, Neil, I; Uytingco, Cedric R.; Chew, Jennifer G.; Bent, Zachary W.; Chan, Chia-Ling; Gnanasambandapillai, Vikkitharan; Dutertre, Charles-Antoine; Gluch, Laurence; Hui, Mun N.; Beith, Jane; Parker, Andrew; Robbins, Elizabeth; Segara, Davendra; Cooper, Caroline; Mak, Cindy; Chan, Belinda; Warrier, Sanjay; Ginhoux, Florent; Millar, Ewan; Powell, Joseph E.; Williams, Stephen R.; Liu, X. Shirley; O'Toole, Sandra; Lim, Elgene; Lundeberg, Joakim; Perou, Charles M.; Swarbrick, Alexander
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Single-cell and spatial transcriptomics enables probabilistic inference of cell type topography
err2020-10-09
err257
errOAAI
errAndersson, Alma; Bergenstrahle, Joseph; Asp, Michaela; Bergenstrahle, Ludvig; Jurek, Aleksandra; Fernandez Navarro, Jose; Lundeberg, Joakim
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Integrating spatial gene expression and breast tumour morphology via deep learning
err2020-06-22
err202
PREAI
errHe, Bryan; Bergenstrahle, Ludvig; Stenbeck, Linnea; Abid, Abubakar; Andersson, Alma; Borg, Ake; Maaskola, Jonas; Lundeberg, Joakim; Zou, James
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