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Evan Z. Macosko

Stanley Center for Psychiatric Research

55H-index
157Paper Count
3.5WCitation Count
Published Papers 38
Publication Date
errNeuron
IF15
err2026-08-07
err0
PREAI
errWade G. Regehr; Evan Z. Macosko; Court A. Hull
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Author Correction: Genome-scale spatial mapping of the Hodgkin lymphoma microenvironment identifies tumor cell survival factors
err2026-05-29
err0
errOAAI
errVignesh Shanmugam; Neriman Tokcan; Daniel Chafamo; Sean Sullivan; Mehdi Borji; Haley Martin; Gail Newton; Naeem Nadaf; Saoirse Hanbury; Irving Barrera; Dylan Cable; Jackson Weir; Orr Ashenberg; Geraldine Pinkus; Scott Rodig; Caroline Uhler; Evan Macosko; Margaret Shipp; Abner Louissaint; Fei Chen; Todd R. Golub
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Pyramidal neurons proportionately alter cortical interneuron subtypes
errNature
IF48.5
err2026-01-21
err0
PREAI
errSherry Jingjing Wu; Min Dai; Shang-Po Yang; Cai McCann; Yanjie Qiu; Vipin Kumar; Giovanni J. Marrero; Jeremiah Tsyporin; Shuhan Huang; David Shin; Jeffrey A. Stogsdill; Daniela J. Di Bella; Qing Xu; Bin Chen; Samouil L. Farhi; Evan Z. Macosko; Fei Chen; Gord Fishell
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Genome-scale spatial mapping of the Hodgkin lymphoma microenvironment identifies tumor cell survival factors
err2025-12-20
err0
errOAAI
errVignesh Shanmugam; Neriman Tokcan; Daniel Chafamo; Sean Sullivan; Mehdi Borji; Haley Martin; Gail Newton; Naeem Nadaf; Saoirse Hanbury; Irving Barrera; Dylan Cable; Jackson Weir; Orr Ashenberg; Geraldine Pinkus; Scott Rodig; Caroline Uhler; Evan Macosko; Margaret Shipp; Abner Louissaint; Fei Chen; Todd R. Golub
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Elevated synaptic PKA activity and abnormal striatal dopamine signaling in Akap11 mutant mice, a genetic model of schizophrenia and bipolar disorder
err2025-11-28
err0
errOAAI
errBryan J. Song; Yang Ge; Ally Nicolella; Min Jee Kwon; Bart Lodder; Kevin Bonanno; Antia Valle-Tojeiro; Nolan D. Hartley; Kira Perzel Mandell; John Adeleye; Deeksha Misri; Chuhan Geng; Sahana Natarajan; Inès Picard; Nate Shepard; Alyssa Hall; Jiawen Tian; Sameer Aryal; Zohreh Farsi; Xiao-Man Liu; Nader Morshed; Naeem M. Nadaf; Horia Pribiag; Sean K. Simmons; D. R. Mani; Beth Stevens; Prabhat S. Kunwar; Zhanyan Fu; Evan Z. Macosko; Joshua Z. Levin; Bernardo L. Sabatini; Steven A. Carr; Borislav Dejanovic; Hasmik Keshishian; Adam J. Granger; Morgan Sheng
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Cassini: streamlined and scalable method for in situ profiling of RNA and protein
err2025-10-01
err0
errOAAI
errNicolas Lapique; Michael Taewoo Kim; Nicholas Thom; Naeem M. Nadaf; Juan Pineda; Evan Z. Macosko
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The neurexin gene family regulates olfactory glomerular formation
err2025-08-05
err0
errOAAI
errSung Jin Park; Namgyu Lee; I-Hao Wang; Hao-Ching Jiang; Thuyvan Luu; Takeshi Uemura; Kensuke Futai; Dohoon Kim; Evan Macosko; Paul Greer
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Scalable spatial transcriptomics through computational array reconstruction
err2025-04-03
err0
PREAI
errHu, Chenlei; Borji, Mehdi; Marrero, Giovanni J.; Kumar, Vipin; Weir, Jackson A.; Kammula, Sachin V.; Macosko, Evan Z.
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HiDDEN: a machine learning method for detection of disease-relevant populations in case-control single-cell transcriptomics data
err2024-11-02
err0
errOAAI
errGoeva, Aleksandrina; Dolan, Michael-John; Luu, Judy; Garcia, Eric; Boiarsky, Rebecca; Gupta, Rajat M.; Macosko, Evan
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Specialized connectivity of molecular layer interneuron subtypes leads to disinhibition and synchronous inhibition of cerebellar Purkinje cells
errNEURON
IF15
err2024-07-01
err3
errOAAI
errLackey, Elizabeth P.; Moreira, Luis; Norton, Aliya; Hemelt, Marie E.; Osorno, Tomas; Nguyen, Tri M.; Macosko, Evan Z.; Lee, Wei-Chung Allen; Hull, Court A.; Regehr, Wade G.
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Brain-region-specific changes in neurons and glia and dysregulation of dopamine signaling in Grin2a mutant mice
errNEURON
IF15
err2023-11-01
err14
errOAAI
errFarsi, Zohreh; Nicolella, Ally; Simmons, Sean K.; Aryal, Sameer; Shepard, Nate; Brenner, Kira; Lin, Sherry; Herzog, Linnea; Moran, Sean P.; Stalnaker, Katherine J.; Shin, Wangyong; Gazestani, Vahid; Song, Bryan J.; Bonanno, Kevin; Keshishian, Hasmik; Carr, Steven A.; Pan, Jen Q.; Macosko, Evan Z.; Datta, Sandeep Robert; Dejanovic, Borislav; Kim, Eunjoon; Levin, Joshua Z.; Sheng, Morgan
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Cortical somatostatin interneuron subtypes form cell-type-specific circuits
errNEURON
IF15
err2023-09-01
err30
errOAAI
errWu, Sherry Jingjing; Sevier, Elaine; Dwivedi, Deepanjali; Saldi, Giuseppe-Antonio; Hairston, Ariel; Yu, Sabrina; Abbott, Lydia; Choi, Da Hae; Sherer, Mia; Qiu, Yanjie; Shinde, Ashwini; Lenahan, Mackenzie; Rizzo, Daniella; Xu, Qing; Barrera, Irving; Kumar, Vipin; Marrero, Giovanni; Pronneke, Alvar; Huang, Shuhan; Kullander, Klas; Stafford, David A.; Macosko, Evan; Chen, Fei; Rudy, Bernardo; Fishell, Gord
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Schizophrenia-associated somatic copy-number variants from 12,834 cases reveal recurrent NRXN1 and ABCB11 disruptions
err2023-08-01
err10
errOAAI
errMaury, Eduardo A.; Sherman, Maxwell A.; Genovese, Giulio; Gilgenast, Thomas G.; Kamath, Tushar; Burris, S. J.; Rajarajan, Prashanth; Flaherty, Erin; Akbarian, Schahram; Chess, Andrew; McCarroll, Steven A.; Loh, Po-Ru; Phillips-Cremins, Jennifer E.; Brennand, Kristen J.; Macosko, Evan Z.; Walters, James T. R.; O'Donovan, Michael; Sullivan, Patrick; Sebat, Jonathan; Lee, Eunjung A.; Walsh, Christopher A.
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Exposure of iPSC-derived human microglia to brain substrates enables the generation and manipulation of diverse transcriptional states in vitro
err2023-07-27
err34
errOAAI
errDolan, Michael-John; Therrien, Martine; Jereb, Sasa; Kamath, Tushar; Gazestani, Vahid; Atkeson, Trevor; Marsh, Samuel E. E.; Goeva, Aleksandrina; Lojek, Neal M. M.; Murphy, Sarah; White, Cassandra M. M.; Joung, Julia; Liu, Bingxu; Limone, Francesco; Eggan, Kevin; Hacohen, Nir; Bernstein, Bradley E. E.; Glass, Christopher K. K.; Leinonen, Ville; Blurton-Jones, Mathew; Zhang, Feng; Epstein, Charles B. B.; Macosko, Evan Z. Z.; Stevens, Beth
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Advances and prospects for the Human BioMolecular Atlas Program (HuBMAP)
err2023-07-19
err36
errOAAI
errJain, Sanjay; Pei, Liming; Spraggins, Jeffrey M.; Angelo, Michael; Carson, James P.; Gehlenborg, Nils; Ginty, Fiona; Goncalves, Joana P.; Hagood, James S.; Hickey, John W.; Kelleher, Neil L.; Laurent, Louise C.; Lin, Shin; Lin, Yiing; Liu, Huiping; Naba, Alexandra; Nakayasu, Ernesto S.; Qian, Wei-Jun; Radtke, Andrea; Robson, Paul; Stockwell, Brent R.; Van de Plas, Raf; Vlachos, Ioannis S.; Zhou, Mowei; Boerner, Katy; Snyder, Michael P.; Ahn, Kyung Jin; Allen, Jamie; Anderson, David M.; Anderton, Christopher R.; Curcio, Christine; Angelin, Alessia; Arvanitis, Constadina; Atta, Lyla; Awosika-Olumo, Demi; Bahmani, Amir; Bai, Huajun; Balderrama, Karol; Balzano, Leandro; Bandyopadhyay, Gautam; Bandyopadhyay, Shovik; Bar-Joseph, Ziv; Barnhart, Kurt; Barwinska, Daria; Becich, Michael; Becker, Laren; Becker, Winston; Bedi, Kenneth; Bendall, Sean; Benninger, Kathy; Betancur, David; Bettinger, Keith; Billings, Sunteasja; Blood, Philip; Bolin, Daniel; Border, Samuel; Bosse, Marc; Bramer, Lisa; Brewer, Maya; Brusko, Maigan; Bueckle, Andreas; Burke, Karl; Burnum-Johnson, Kristin; Butcher, Eugene; Butterworth, Elizabeth; Cai, Long; Calandrelli, Riccardo; Caldwell, Michael; Campbell-Thompson, Martha; Cao, Dongfeng; Cao-Berg, Ivan; Caprioli, Richard; Caraccio, Chiara; Caron, Anita; Carroll, Megan; Chadwick, Chrystal; Chen, Angela; Chen, Derek; Chen, Fei; Chen, Haoran; Chen, Jing; Chen, Li; Chen, Lu; Chiacchia, Kenneth; Cho, Sanghee; Chou, Peter; Choy, Lisa; Cisar, Cecilia; Clair, Geremy; Clarke, Laura; Clouthier, Kelly A.; Colley, Madeline E.; Conlon, Kristin; Conroy, John; Contrepois, Kevin; Corbett, Anthony; Corwin, Alex; Cotter, Daniel; Courtois, Elise; Cruz, Aaron; Csonka, Christopher; Czupil, Kimberley; Daiya, Vicky; Dale, Kali; Davanagere, Shakeel Ahamed; Dayao, Monica; de Caestecker, Mark P.; Decker, Aubrianna; Deems, Stephen; Degnan, David; Desai, Tushar; Deshpande, Vikrant; Deutsch, Gail; Devlin, Michelle; Diep, Dinh; Dodd, Carla; Donahue, Sean; Dong, Weixiu; Peixoto, Rafael dos Santos; Duffy, Michael; Dufresne, Martin; Duong, Thu Elizabeth; Dutra, Jennifer; Eadon, Michael T.; El-Achkar, Tarek M.; Enninful, Archibald; Eraslan, Gokcen; Eshelman, Diane; Espin-Perez, Almudena; Esplin, Edward D.; Esselman, Allison; Falo, Louis D.; Falo, Louis; Fan, Jean; Fan, Rong; Farrow, Melissa A.; Farzad, Negin; Favaro, Patricia; Fermin, Jamie; Filiz, Ferda; Filus, Shane; Fisch, Kathleen; Fisher, Eyal; Fisher, Stephen; Flowers, Katelyn; Flynn, William F.; Fogo, Agnes B.; Fu, Dongtao (Ann); Fulcher, James; Fung, Anthony; Furst, Derek; Gallant, Michael; Gao, Fu; Gao, Yu; Gaulton, Kyle; Gaut, Joseph P.; Gee, James; Ghag, Reetika R.; Ghazanfar, Shila; Ghose, Soumya; Gisch, Debora; Gold, Ilan; Gondalia, Aashay; Gorman, Brittney; Greenleaf, William; Greenwald, Noah; Gregory, Brian; Guo, Rong; Gupta, Rajat; Hakimian, Hunter; Haltom, Jeff; Halushka, Marc; Han, Kyu Sang; Hanson, Casey; Harbury, Pehr; Hardi, Josef; Harlan, Linda; Harris, Raymond C.; Hartman, Austin; Heidari, Elyas; Helfer, Jesse; Helminiak, David; Hemberg, Martin; Henning, Nathaniel; Herr, Bruce W., II; Ho, Jonhan; Holden-Wiltse, Jeanne; Hong, Seung-Hyun; Hong, Young-Kwon; Honick, Brendan; Hood, Greg; Hu, Po; Hu, Qiwen; Huang, Molly; Huyck, Heidie; Imtiaz, Tamjid; Isberg, Olof Gerdur; Itkin, Maxim; Jackson, Dana; Jacobs, Marni; Jain, Yashvardhan; Jewell, David; Jiang, Lihua; Jiang, Zhenghui G.; Johnston, Sarah; Joshi, Pujan; Ju, Yingnan; Judd, Audra; Kagel, Adam; Kahn, Ari; Kalavros, Nikolaos; Kalhor, Kian; Karagkouni, Dimitra; Karathanos, Thomas; Karunamurthy, Arivarasan; Katari, Suhas; Kates, Heather; Kaushal, Madhurima; Keener, Nicholas; Keller, Mark; Kenney, Mariah; Kern, Colin; Kharchenko, Peter; Kim, Junhyong; Kingsford, Carl; Kirwan, Jessica; Kiselev, Vladimir; Kishi, Jocelyn; Kitata, Reta Birhanu; Knoten, Amanda; Kollar, Charles; Krishnamoorthy, Praveen; Kruse, Angela R. S.; Da, Kuang; Kundaje, Anshul; Kutschera, Eric; Kwon, Yumi; Lake, Blue B.; Lancaster, Samuel; Langlieb, Jonah; Lardenoije, Roy; Laronda, Monica; Laskin, Julia; Lau, Ken; Lee, Hayan; Lee, Maria; Lee, Mejeong; Strekalova, Yulia Levites; Li, Dongshunyi; Li, Jennifer; Li, Jilong; Li, Xiangtang; Li, Zhi; Liao, Yen-Chen; Liaw, Tiffany; Lin, Pei; Lin, Yulieh; Lindsay, Scott; Liu, Chunjie; Liu, Yang; Liu, Yuan; Lott, Marie; Lotz, Martin; Lowery, Lisa; Lu, Peiran; Lu, Xinyue; Lucarelli, Nicholas; Lun, Xiaokang; Luo, Zhifei; Ma, Jian; Macosko, Evan; Mahajan, Mayank; Maier, Libby; Makowski, Danika; Malek, Morad; Manthey, David; Manz, Trevor; Margulies, Kenneth; Marioni, John; Martindale, Matthew; Mason, Cayla; Mathews, Clayton; Maye, Peter; McCallum, Chuck; McDonough, Elizabeth; McDonough, Liz; Mcdowell, Hannah; Meads, Morgan; Medina-Serpas, Miguel; Ferreira, Ricardo Melo; Messinger, Jeffrey; Metis, Kay; Migas, Lukasz G.; Miller, Brendan; Mimar, Sayat; Minor, Brittany; Misra, Ravi; Missarova, Alsu; Mistretta, Christopher; Moens, Roger; Moerth, Eric; Moffitt, Jeffrey; Molla, Gesmira; Monroe, Matthew; Monte, Emma; Morgan, Mike; Muraro, Daniele; Murphy, Bob (Robert); Murray, Evan; Musen, Mark A.; Naglah, Ahmed; Nasamran, Chanond; Neelakantan, Taruna; Nevins, Stephanie; Hieu Nguyen; Nam Nguyen; Tram Nguyen; Tri Nguyen; Nigra, Deb; Nofal, Michel; Nolan, Garry; Nwanne, Gerald; O'Connor, Martin; Okuda, Kenichi; Olmer, Merissa; O'Neill, Kathleen; Otaluka, Nancy; Pang, Minxing; Parast, Mana; Pasa-Tolic, Ljiljana; Paten, Benedict; Patterson, Nathan Heath; Peng, Ting; Phillips, Gesina; Pichavant, Mina; Piehowski, Paul; Pilner, Hannah; Pingry, Ellie; Pita-Juarez, Yered; Plevritis, Sylvia; Ploumakis, Athanasios; Pouch, Alison; Pryhuber, Gloria; Puerto, Juan; Qaurooni, Danial; Qin, Ling; Quardokus, Ellen M.; Rajbhandari, Presha; Rakow-Penner, Rebecca; Ramasamy, Ramalakshmi; Read, David; Record, Elizabeth G.; Reeves, David; Ricarte, Allyson; Rodriguez-Soto, Ana; Ropelewski, Alexander; Rosario, Jean; Roselkis, Morla-Adames; Rowe, David; Roy, Tarun Kanti; Ruffalo, Matt; Ruschman, Nancy; Sabo, Angela; Sachdev, Nina; Saka, Sinem; Salamon, Diane; Sarder, Pinaki; Sasaki, Hiroshi; Satija, Rahul; Saunders, Diane; Sawka, Riley; Schey, Kevin; Schlehlein, Heidi; Scholten, David; Schultz, Sarah; Schwartz, Lauren; Schwenk, Melissa; Scibek, Robin; Segre, Ayellet; Serrata, Matthew; Shands, Walter; Shen, Xiaotao; Shendure, Jay; Shephard, Holly; Shi, Lingyan; Shi, Tujin; Shin, Dong-Guk; Shirey, Bill; Sibilla, Max; Silber, Michal; Silverstein, Jonathan; Simmel, Derek; Simmons, Alan; Singhal, Dhruv; Sivajothi, Santhosh; Smits, Thomas; Soncin, Francesca; Song, Qi; Stanley, Valentina; Stuart, Tim; Su, Hanquan; Su, Pei; Sun, Xin; Surrette, Christine; Swahn, Hannah; Tan, Kai; Teichmann, Sarah; Tejomay, Abhiroop; Tellides, George; Thomas, Kathleen; Thomas, Tracey; Thompson, Marissa; Tian, Hua; Tideman, Leonoor; Trapnell, Cole; Tsai, Albert G.; Tsai, Chia-Feng; Tsai, Leo; Tsui, Elizabeth; Tsui, Tina; Tung, Jason; Turner, Morgan; Uranic, Jackie; Vaishnav, Eeshit Dhaval; Varra, Sricharan Reddy; Vaskivskyi, Vasyl; Velickovic, Dusan; Velickovic, Marija; Verheyden, Jamie; Waldrip, Jessica; Wallace, Douglas; Wan, Xueyi; Wang, Allen; Wang, Fusheng; Wang, Meng; Wang, Shuoshuo; Wang, Xuefei; Wasserfall, Clive; Wayne, Leonard; Webber, James; Weber, Griffin M.; Wei, Bei; Wei, Jian-Jun; Weimer, Annika; Welling, Joel; Wen, Xingzhao; Wen, Zishen; Williams, MacKenzie; Winfree, Seth; Winograd, Nicholas; Woodard, Abashai; Wright, Devin; Wu, Fan; Wu, Pei-Hsun; Wu, Qiuyang; Wu, Xiaodong; Xing, Yi; Xu, Tiangyang; Yang, Manxi; Yang, Mingyu; Yap, Joseph; Ye, Dong Hye; Yin, Peng; Yuan, Zhou; Yun, Chi (Jina); Zahraei, Ali; Zemaitis, Kevin; Zhang, Bo; Zhang, Caibin; Zhang, Chenyu; Zhang, Chi; Zhang, Kun; Zhang, Shiping; Zhang, Ted; Zhang, Yida; Zhao, Bingqing; Zhao, Wenxin; Zheng, Jia Wen; Zhong, Sheng; Zhu, Bokai; Zhu, Chenchen; Zhu, Diming; Zhu, Quan; Zhu, Ying
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Spatiotemporal transcriptomic maps of whole mouse embryos at the onset of organogenesis
err2023-07-06
err10
errOAAI
errKumar, Abhishek Sampath; Tian, Luyi; Bolondi, Adriano; Hernandez, Amelia Aragones; Stickels, Robert; Kretzmer, Helene; Murray, Evan; Wittler, Lars; Walther, Maria; Barakat, Gabriel; Haut, Leah; Elkabetz, Yechiel; Macosko, Evan Z.; Guignard, Leo; Chen, Fei; Meissner, Alexander
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Emergence of division of labor in tissues through cell interactions and spatial cues
err2023-05-01
err12
errOAAI
errAdler, Miri; Moriel, Noa; Goeva, Aleksandrina; Avraham-Davidi, Inbal; Mages, Simon; Adams, Taylor S.; Kaminski, Naftali; Macosko, Evan Z.; Regev, Aviv; Medzhitov, Ruslan; Nitzan, Mor
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Dissecting the immune suppressive human prostate tumor microenvironment via integrated single-cell and spatial transcriptomic analyses
err2023-02-07
err67
errOAAI
errHirz, Taghreed; Mei, Shenglin; Sarkar, Hirak; Kfoury, Youmna; Wu, Shulin; Verhoeven, Bronte M.; Subtelny, Alexander O.; Zlatev, Dimitar V.; Wszolek, Matthew W.; Salari, Keyan; Murray, Evan; Chen, Fei; Macosko, Evan Z.; Wu, Chin-Lee; Scadden, David T.; Dahl, Douglas M.; Baryawno, Ninib; Saylor, Philip J.; Kharchenko, Peter V.; Sykes, David B.
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Multimodal single-cell and whole-genome sequencing of small, frozen clinical specimens
err2023-01-09
err24
errOAAI
errWang, Yiping; Fan, Joy Linyue; Melms, Johannes C. C.; Amin, Amit Dipak; Georgis, Yohanna; Barrera, Irving; Ho, Patricia; Tagore, Somnath; Abril-Rodriguez, Gabriel; He, Siyu; Jin, Yinuo; Biermann, Jana; Hofree, Matan; Caprio, Lindsay; Berhe, Simon; Khan, Shaheer A. A.; Henick, Brian S. S.; Ribas, Antoni; Macosko, Evan Z. Z.; Chen, Fei; Taylor, Alison M. M.; Schwartz, Gary K. K.; Carvajal, Richard D. D.; Azizi, Elham; Izar, Benjamin
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