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Mattia Bernetti

istituto italiano di tecnologia - iit

14H-index
47Paper Count
2.0KCitation Count
Published Papers 22
Publication Date
Critical Assessment of a Structure-Based Pipeline for Targeting the Long Noncoding RNA MALAT1
err2026-03-01
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errOAAI
errAguti, Riccardo; Bernetti, Mattia; Elisi, Gian Marco; Cavalli, Andrea; Masetti, Matteo
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Dissecting the RAD51–BRC4 Interaction Landscape through Integrative Molecular Simulations and Experimental Biophysics
err2025-10-22
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errOAAI
errVeronica Bresciani; Francesco Rinaldi; Pedro Franco; Stefania Girotto; Andrea Cavalli; Julian D. Langer; Matteo Masetti; Mattia Bernetti
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Application of Deep Learning to Predict the Persistence, Bioaccumulation, and Toxicity of Pharmaceuticals
err2025-04-03
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errOAAI
errEvangelista, Dominga; Nelson, Elliot; Skyner, Rachael; Tehan, Ben; Bernetti, Mattia; Roberti, Marinella
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PLUMED Tutorials: A collaborative, community-driven learning ecosystem
err2025-03-07
err1
PREAI
errTribello, Gareth A.; Bonomi, Massimiliano; Bussi, Giovanni; Camilloni, Carlo; Armstrong, Blake I.; Arsiccio, Andrea; Aureli, Simone; Ballabio, Federico; Bernetti, Mattia; Bonati, Luigi; Brookes, Samuel G. H.; Brotzakis, Z. Faidon; Capelli, Riccardo; Ceriotti, Michele; Chan, Kam-Tung; Cossio, Pilar; Dasetty, Siva; Donadio, Davide; Ensing, Bernd; Ferguson, Andrew L.; Fraux, Guillaume; Gale, Julian D.; Gervasio, Francesco Luigi; Giorgino, Toni; Herringer, Nicholas S. M.; Hocky, Glen M.; Hoff, Samuel E.; Invernizzi, Michele; Languin-Cattoen, Olivier; Leone, Vanessa; Limongelli, Vittorio; Lopez-Acevedo, Olga; Marinelli, Fabrizio; Febrer Martinez, Pedro; Masetti, Matteo; Mehdi, Shams; Michaelides, Angelos; Murtada, Mhd Hussein; Parrinello, Michele; Piaggi, Pablo M.; Pietropaolo, Adriana; Pietrucci, Fabio; Pipolo, Silvio; Pritchard, Claire; Raiteri, Paolo; Raniolo, Stefano; Rapetti, Daniele; Rizzi, Valerio; Rydzewski, Jakub; Salvalaglio, Matteo; Schran, Christoph; Seal, Aniruddha; Shayesteh Zadeh, Armin; Silva, Tomas F. D.; Spiwok, Vojtech; Stirnemann, Guillaume; Sucerquia, Daniel; Tiwary, Pratyush; Valsson, Omar; Vendruscolo, Michele; Voth, Gregory A.; White, Andrew D.; Wu, Jiangbo
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Probing allosteric communication with combined molecular dynamics simulations and network analysis
err2024-06-01
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errOAAI
errBernetti, Mattia; Bosio, Stefano; Bresciani, Veronica; Falchi, Federico; Masetti, Matteo
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On the allosteric puzzle and pocket crosstalk through computational means
err2023-04-24
err6
PREAI
errAguti, Riccardo; Bernetti, Mattia; Bosio, Stefano; Decherchi, Sergio; Cavalli, Andrea
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Molecular Simulations Matching Denaturation Experiments for N6-Methyladenosine
err2022-08-03
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errOAAI
errPiomponi, Valerio; Froehlking, Thorben; Bernetti, Mattia; Bussi, Giovanni
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Data-Driven Molecular Dynamics: A Multifaceted Challenge
err2020-09-18
err23
errOAAI
errBernetti, Mattia; Bertazzo, Martina; Masetti, Matteo
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Pressure control using stochastic cell rescaling
err2020-09-16
err235
errOAAI
errBernetti, Mattia; Bussi, Giovanni
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Toward empirical force fields that match experimental observables
err2020-06-17
err59
errOAAI
errFrohlking, Thorben; Bernetti, Mattia; Calonaci, Nicola; Bussi, Giovanni
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An Integrated Markov State Model and Path Metadynamics Approach To Characterize Drug Binding Processes
err2019-08-22
err49
PREAI
errBernetti, Mattia; Masetti, Matteo; Recanatini, Maurizio; Amaro, Rommie E.; Cavalli, Andrea
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Promoting transparency and reproducibility in enhanced molecular simulations
err2019-07-30
err715
errOAAI
errBonomi, Massimiliano; Bussi, Giovanni; Camilloni, Carlo; Tribello, Gareth A.; Banas, Pavel; Barducci, Alessandro; Bernetti, Mattia; Bolhuis, Peter G.; Bottaro, Sandro; Branduardi, Davide; Capelli, Riccardo; Carloni, Paolo; Ceriotti, Michele; Cesari, Andrea; Chen, Haochuan; Chen, Wei; Colizzi, Francesco; De, Sandip; De La Pierre, Marco; Donadio, Davide; Drobot, Viktor; Ensing, Bernd; Ferguson, Andrew L.; Filizola, Marta; Fraser, James S.; Fu, Haohao; Gasparotto, Piero; Gervasio, Francesco Luigi; Giberti, Federico; Gil-Ley, Alejandro; Giorgino, Toni; Heller, Gabriella T.; Hocky, Glen M.; Iannuzzi, Marcella; Invernizzi, Michele; Jelfs, Kim E.; Jussupow, Alexander; Kirilin, Evgeny; Laio, Alessandro; Limongelli, Vittorio; Lindorff-Larsen, Kresten; Lohr, Thomas; Marinelli, Fabrizio; Martin-Samos, Layla; Masetti, Matteo; Meyer, Ralf; Michaelides, Angelos; Molteni, Carla; Morishita, Tetsuya; Nava, Marco; Paissoni, Cristina; Papaleo, Elena; Parrinello, Michele; Pfaendtner, Jim; Piaggi, Pablo; Piccini, GiovanniMaria; Pietropaolo, Adriana; Pietrucci, Fabio; Pipolo, Silvio; Provasi, Davide; Quigley, David; Raiteri, Paolo; Raniolo, Stefano; Rydzewski, Jakub; Salvalaglio, Matteo; Sosso, Gabriele Cesare; Spiwok, Vojtech; Sponer, Jiri; Swenson, David W. H.; Tiwary, Pratyush; Valsson, Omar; Vendruscolo, Michele; Voth, Gregory A.; White, Andrew
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Kinetics of Drug Binding and Residence Time
err2019-06-14
err111
PREAI
errBernetti, Mattia; Masetti, Matteo; Rocchia, Walter; Cavalli, Andrea
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Predicting Residence Time and Drug Unbinding Pathway through Scaled Molecular Dynamics
err2018-11-30
err58
PREAI
errSchuetz, Doris A.; Bernetti, Mattia; Bertazzo, Martina; Musil, Djordje; Eggenweiler, Hans-Michael; Recanatini, Maurizio; Masetti, Matteo; Ecker, Gerhard F.; Cavalli, Andrea
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Binding Residence Time through Scaled Molecular Dynamics: A Prospective Application to hDAAO Inhibitors
err2018-10-19
err19
PREAI
errBernetti, Mattia; Rosini, Elena; Mollica, Luca; Masetti, Matteo; Pollegioni, Loredano; Recanatini, Maurizio; Cavalli, Andrea
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