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SaveShare Save Share Save RNA-Puzzles Round V: blind predictions of 23 RNA structures
Bu, Fan; Adam, Yagoub; Adamiak, Ryszard W.; Antczak, Maciej; de Aquino, Belisa Rebeca H.; Badepally, Nagendar Goud; Batey, Robert T.; Baulin, Eugene F.; Boinski, Pawel; Boniecki, Michal J.; Bujnicki, Janusz M.; Carpenter, Kristy A.; Chacon, Jose; Chen, Shi-Jie; Chiu, Wah; Cordero, Pablo; Das, Naba Krishna; Das, Rhiju; Dawson, Wayne K.; Dimaio, Frank; Ding, Feng; Dock-Bregeon, Anne-Catherine; Dokholyan, Nikolay V.; Dror, Ron O.; Dunin-Horkawicz, Stanislaw; Eismann, Stephan; Ennifar, Eric; Esmaeeli, Reza; Farsani, Masoud Amiri; Ferre-D'Amare, Adrian R.; Geniesse, Caleb; Ghanim, George E.; Guzman, Horacio V.; Hood, Iris V.; Huang, Lin; Jain, Dharm Skandh; Jaryani, Farhang; Jin, Lei; Joshi, Astha; Karelina, Masha; Kieft, Jeffrey S.; Kladwang, Wipapat; Kmiecik, Sebastian; Koirala, Deepak; Kollmann, Markus; Kretsch, Rachael C.; Kurcinski, Mateusz; Li, Jun; Li, Shuang; Magnus, Marcin; Masquida, Benoit; Moafinejad, S. Naeim; Mondal, Arup; Mukherjee, Sunandan; Nguyen, Thi Hoang Duong; Nikolaev, Grigory; Nithin, Chandran; Nye, Grace; Pandaranadar Jeyeram, Iswarya P. N.; Perez, Alberto; Pham, Phillip; Piccirilli, Joseph A.; Pilla, Smita Priyadarshini; Pluta, Radoslaw; Poblete, Simon; Ponce-Salvatierra, Almudena; Popenda, Mariusz; Popenda, Lukasz; Pucci, Fabrizio; Rangan, Ramya; Ray, Angana; Ren, Aiming; Sarzynska, Joanna; Sha, Congzhou Mike; Stefaniak, Filip; Su, Zhaoming; Suddala, Krishna C.; Szachniuk, Marta; Townshend, Raphael; Trachman III, Robert J.; Wang, Jian; Wang, Wenkai; Watkins, Andrew; Wirecki, Tomasz K.; Xiao, Yi; Xiong, Peng; Xiong, Yiduo; Yang, Jianyi; Yesselman, Joseph David; Zhang, Jinwei; Zhang, Yi; Zhang, Zhenzhen; Zhou, Yuanzhe; Zok, Tomasz; Zhang, Dong; Zhang, Sicheng; Zyla, Adriana; Westhof, Eric; Miao, Zhichao Share Save Share Save New prediction categories in CASP15Kryshtafovych, Andriy; Antczak, Maciej; Szachniuk, Marta; Zok, Tomasz; Kretsch, Rachael C.; Rangan, Ramya; Pham, Phillip; Das, Rhiju; Robin, Xavier; Studer, Gabriel; Durairaj, Janani; Eberhardt, Jerome; Sweeney, Aaron; Topf, Maya; Schwede, Torsten; Fidelis, Krzysztof; Moult, John Share Save Share Save Share Save Share Save Share Save RNA-Puzzles Round IV: 3D structure predictions of four ribozymes and two aptamersMiao, Zhichao; Adamiak, Ryszard W.; Antczak, Maciej; Boniecki, Michal J.; Bujnicki, Janusz; Chen, Shi-Jie; Cheng, Clarence Yu; Cheng, Yi; Chou, Fang-Chieh; Das, Rhiju; Dokholyan, Nikolay, V; Ding, Feng; Geniesse, Caleb; Jiang, Yangwei; Joshi, Astha; Krokhotin, Andrey; Magnus, Marcin; Mailhot, Olivier; Major, Francois; Mann, Thomas H.; Piatkowski, Pawel; Pluta, Radoslaw; Popenda, Mariusz; Sarzynska, Joanna; Sun, Lizhen; Szachniuk, Marta; Tian, Siqi; Wang, Jian; Wang, Jun; Watkins, Andrew M.; Wiedemann, Jakub; Xiao, Yi; Xu, Xiaojun; Yesselman, Joseph D.; Zhang, Dong; Zhang, Yi; Zhang, Zhenzhen; Zhao, Chenhan; Zhao, Peinan; Zhou, Yuanzhe; Zok, Tomasz; Zyla, Adriana; Ren, Aiming; Batey, Robert T.; Golden, Barbara L.; Huang, Lin; Lilley, David M.; Liu, Yijin; Patel, Dinshaw J.; Westhof, Eric Share Save RNA-Puzzles toolkit: a computational resource of RNA 3D structure benchmark datasets, structure manipulation, and evaluation toolsMagnus, Marcin; Antczak, Maciej; Zok, Tomasz; Wiedemann, Jakub; Lukasiak, Piotr; Cao, Yang; Bujnicki, Janusz M.; Westhof, Eric; Szachniuk, Marta; Miao, Zhichao Share Save INDIGO-DataCloud: a Platform to Facilitate Seamless Access to E-InfrastructuresSalomoni, D.; Campos, I.; Gaido, L.; de Lucas, J. Marco; Solagna, P.; Gomes, J.; Matyska, L.; Fuhrman, P.; Hardt, M.; Donvito, G.; Dutka, L.; Plociennik, M.; Barbera, R.; Blanquer, I.; Ceccanti, A.; Cetinic, E.; David, M.; Duma, C.; Lopez-Garcia, A.; Molto, G.; Orviz, P.; Sustr, Z.; Viljoen, M.; Aguilar, F.; Alves, L.; Antonacci, M.; Antonelli, L. A.; Bagnasco, S.; Bonvin, A. M. J. J.; Bruno, R.; Chen, Y.; Costa, A.; Davidovic, D.; Ertl, B.; Fargetta, M.; Fiore, S.; Gallozzi, S.; Kurkcuoglu, Z.; Lloret, L.; Martins, J.; Nuzzo, A.; Nassisi, P.; Palazzo, C.; Pina, J.; Sciacca, E.; Spiga, D.; Tangaro, M.; Urbaniak, M.; Vallero, S.; Wegh, B.; Zaccolo, V.; Zambelli, F.; Zok, T. Share Save Share Save Share Save RNA-Puzzles Round III: 3D RNA structure prediction of five riboswitches and one ribozymeMiao, Zhichao; Adamiak, Ryszard W.; Antczak, Maciej; Batey, Robert T.; Becka, Alexander J.; Biesiada, Marcin; Boniecki, Michat J.; Bujnicki, Janusz M.; Chen, Shi-Jie; Cheng, Clarence Yu; Chou, Fang-Chieh; Ferre-D'Amare, Adrian R.; Das, Rhiju; Dawson, Wayne K.; Ding, Feng; Dokholyan, Nikolay V.; Dunin-Horkawicz, Stanistaw; Geniesse, Caleb; Kappel, Kalli; Kladwang, Wipapat; Krokhotin, Andrey; Lach, Grzegorz E.; Major, Francois; Mann, Thomas H.; Magnus, Marcin; Pachulska-Wieczorek, Katarzyna; Patel, Dinshaw J.; Piccirilli, Joseph A.; Popenda, Mariusz; Purzycka, Katarzyna J.; Ren, Aiming; Rice, Greggory M.; Santalucia, John, Jr.; Sarzynska, Joanna; Szachniuk, Marta; Tandon, Arpit; Trausch, Jeremiah J.; Tian, Siqi; Wang, Jian; Weeks, Kevin M.; Williams, Benfeard, II; Xiao, Yi; Xu, Xiaojun; Zhang, Dong; Zok, Tomasz; Westhof, Eric Share Save RNA-Puzzles Round II: assessment of RNA structure prediction programs applied to three large RNA structuresMiao, Zhichao; Adamiak, Ryszard W.; Blanchet, Marc-Frederick; Boniecki, Michal; Bujnicki, Janusz M.; Chen, Shi-Jie; Cheng, Clarence; Chojnowski, Grzegorz; Chou, Fang-Chieh; Cordero, Pablo; Cruz, Jose Almeida; Ferre-D'amare, Adrian R.; Das, Rhiju; Ding, Feng; Dokholyan, Nikolay V.; Dunin-Horkawicz, Stanislaw; Kladwang, Wipapat; Krokhotin, Andrey; Lach, Grzegorz; Magnus, Marcin; Major, Francois; Mann, Thomas H.; Masquida, Benoit; Matelska, Dorota; Meyer, Melanie; Peselis, Alla; Popenda, Mariusz; Purzycka, Katarzyna J.; Serganov, Alexander; Stasiewicz, Juliusz; Szachniuk, Marta; Tandon, Arpit; Tian, Siqi; Wang, Jian; Xia, Yi; Xu, Xiaojun; Zhang, Jinwei; Zha, Peinan; Zok, Tomasz; Westhof, Eric Share Save The European Integrated Tokamak Modelling (ITM) effort: achievements and first physics results (vol 54, 043018, 2014)Falchetto, G. L.; Coster, D.; Coelho, R.; Scott, B. D.; Figini, L.; Kalupin, D.; Nardon, E.; Nowak, S.; Alves, L. L.; Artaud, J. F.; Basiuk, V.; Bizarro, Joao P. S.; Boulbe, C.; Dinklage, A.; Farina, D.; Faugeras, B.; Ferreira, J.; Figueiredo, A.; Huynh, Ph.; Imbeaux, F.; Ivanova-Stanik, I.; Jonsson, T.; Klingshirn, H. -J.; Konz, C.; Kus, A.; Marushchenko, N. B.; Pereverzev, G.; Owsiak, M.; Poli, E.; Peysson, Y.; Reimer, R.; Signoret, J.; Sauter, O.; Stankiewicz, R.; Strand, P.; Voitsekhovitch, I.; Westerhof, E.; Zok, T.; Zwingmann, W. Share Save Share Save The European Integrated Tokamak Modelling (ITM) effort: achievements and first physics resultsFalchetto, G. L.; Coster, D.; Coelho, R.; Scott, B. D.; Figini, L.; Kalupin, D.; Nardon, E.; Nowak, S.; Alves, L. L.; Artaud, J. F.; Basiuk, V.; Bizarro, Jao P. S.; Boulbe, C.; Dinklage, A.; Farina, D.; Faugeras, B.; Ferreira, J.; Figueiredo, A.; Huynh, Ph; Imbeaux, F.; Ivanova-Stanik, I.; Jonsson, T.; Klingshirn, H-J; Konz, C.; Kus, A.; Marushchenko, N. B.; Pereverzev, G.; Owsiak, M.; Poli, E.; Peysson, Y.; Reimer, R.; Signoret, J.; Sauter, O.; Stankiewicz, R.; Strand, P.; Voitsekhovitch, I.; Westerhof, E.; Zok, T.; Zwingmann, W. Share Save 
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