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D

Daniel J. Rigden

university of liverpool

64H-index
397Paper Count
1.5WCitation Count
Published Papers 149
Publication Date
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The promise of AlphaFold for gene structure annotation
errNucleic Acids Research
IF13.1
err2026-05-08
err0
PREAI
errDavison, Helen R.; Bohme, Ulrike; Mesdaghi, Shahram; Wilkinson, Paul A.; Roos, David S.; Jones, Andrew R.; Rigden, Daniel J.
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An AI-Ready Phosphorylation Meta-Analysis for Saccharomyces cerevisiae
errJournal of Proteome Research
IF3.6
err2026-05-04
err0
errOAAI
errEllen L Boswell; Kerry A Ramsbottom; Jun Fan; Yasset Perez-Riverol; Emily H Bowler-Barnett; Zhi Sun; Shahram Mesdaghi; Daniel J Rigden; Maria J Martin; Eric W Deutsch; Juan Antonio Vizcaíno; Andrew R Jones
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AlphaFold-driven discovery of oxysterol-binding protein-related protein-phosphoinositide 3-, 4-, and 5-phosphatase interactions using new generation confidence scores
errProtein Science
IF5.2
err2026-04-15
err0
errOAAI
errFilippo Dall'Armellina; Sylvie Urbé; Daniel J. Rigden
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errSave
Comprehensive Epitranscriptome Analysis from MeRIP-seq Data with exomePeak2
errGenomics, Proteomics & Bioinformatics
IF0
err2026-03-03
err0
errOAAI
errJingxian Zhou; Zhen Wei; Di Zhen; Yue Wang; Jionglong Su; Frans Coenen; Guifang Jia; Daniel J Rigden; Jia Meng; null
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errSave
Physical Implausibility of Carbohydrate Ligands in Results of Deep Learning-Based Cofolding Methods
errJournal of Chemical Information and Modeling
IF5.3
err2026-03-01
err0
errOAAI
errLuthfi, Muhammad; Simpkin, Adam J.; Elliott, Luc G.; Sompornpisut, Pornthep; Rigden, Daniel J.
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errSave
Mass spectrometry (MS)-based proteomics and the sulfome: clinical potential
errEXPERT REVIEW OF PROTEOMICS
IF2.8
err2025-12-01
err0
PREAI
errOswald, Sally O.; Daly, Leonard A.; Mesdaghi, Shahram; Jones, Sarah; Rigden, Daniel J.; Eyers, Patrick A.; Eyers, Claire E.
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errSave
The 2026 Nucleic Acids Research database issue and the online molecular biology database collection
errNUCLEIC ACIDS RESEARCH
IF13.1
err2025-12-01
err0
PREAI
errRigden, Daniel J.; Fernandez, Xose M.
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errSave
m6AConquer: a consistently quantified and orthogonally validated database for the N6-methyladenosine (m6A) epitranscriptome
errNUCLEIC ACIDS RESEARCH
IF13.1
err2025-12-01
err0
PREAI
errZhao, Xichen; Ye, Haokai; He, Dan; Liu, Hongxi; Li, Tenglong; Rigden, Daniel J.; Wei, Zhen
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errSave
ANUBI: A Platform for Affinity Optimization of Proteins and Peptides in Drug Design
errJOURNAL OF CHEMICAL THEORY AND COMPUTATION
IF5.5
err2025-12-01
err0
PREAI
errBuratto, Damiano; Wang, Wanding; Zhang, Xinyi; Zhu, Qiujie; Meng, Jia; Rigden, Daniel J.; Zhou, Ruhong; Zonta, Francesco
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errSave
DirectRM: integrated detection of landscape and crosstalk between multiple RNA modifications using direct RNA sequencing
errNature Communications
IF15.7
err2025-10-27
err0
errOAAI
errYuxin Zhang; Yuecheng Wu; Jiongming Ma; Yiyu Wu; Liying Li; Haozhe Wang; Guifang Jia; Daniel J. Rigden; Jia Meng; Daiyun Huang; Kunqi Chen
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errSave
From paleness to albinism: Contribution of OCA2 exon 10 skipping to hypopigmentation
errPLOS GENETICS
IF3.7
err2025-09-25
err0
PREAI
errMercier, Elina; Tregouet, David-Alexandre; Campagne, Sebastien; Michaud, Vincent; Green, David J.; Mesdaghi, Shahram; Le Gallais, Orane; Jouannigot-Castano, Orphee; Rigden, Daniel J.; Estay-Ahumada, Catherine; Hicks, David; Sergouniotis, Panagiotis I.; Arveiler, Benoit; Javerzat, Sophie
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Targeting NAT10 Inhibits Hepatocarcinogenesis via ac4C-Mediated SMAD3 mRNA Stability
errEXPLORATION
IF22.5
err2025-09-01
err0
errOAAI
errZhang, Yigan; Dong, Yanbin; Chen, Shuwen; Deng, Hao; Yu, Weiru; Chen, Bonan; Chen, Minjie; Liu, Wanglong; Tan, Xiao; Ni, Jiaxin; Rigden, Daniel; Wang, Xuan; Zhou, Wuhua; Meng, Jia; Chen, Juan; Xue, Yuanchao; Meng, Zhongji
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errSave
Slice'N'Dice: maximizing the value of predicted models for structural biologists
errACTA CRYSTALLOGRAPHICA SECTION D-STRUCTURAL BIOLOGY
IF3.8
err2025-02-20
err0
errOAAI
errSimpkin, AJ; Elliot, LG; Joseph, AP; Burnley, T; Stevenson, K; Rodriguez, FS; Fando, M; Krissinel, E; McNicholas, S; Rigden, DJ; Keegan, RM
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errSave
The 2025 Nucleic Acids Research database issue and the online molecular biology database collection
errNUCLEIC ACIDS RESEARCH
IF13.1
err2024-12-10
err0
errOAAI
errRigden, Daniel J.; Fernandez, Xose M.
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errSave
Interpretable deep cross networks unveiled common signatures of dysregulated epitranscriptomes across 12 cancer types
errMOLECULAR THERAPY NUCLEIC ACIDS
IF6.1
err2024-12-01
err0
errOAAI
errXia, Rong; Yin, Xiangyu; Huang, Jiaming; Chen, Kunqi; Ma, Jiongming; Wei, Zhen; Su, Jionglong; Blake, Neil; Rigden, Daniel J.; Meng, Jia; Song, Bowen
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errSave
The success rate of processed predicted models in molecular replacement: implications for experimental phasing in the AlphaFold era
errACTA CRYSTALLOGRAPHICA SECTION D-STRUCTURAL BIOLOGY
IF3.8
err2024-10-03
err2
errOAAI
errKeegan, RM; Simpkin, AJ; Rigden, DJ
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errSave
m6ACali: machine learning-powered calibration for accurate m6A detection in MeRIP-Seq
errNUCLEIC ACIDS RESEARCH
IF13.1
err2024-04-18
err2
errOAAI
errYe, Haokai; Li, Tenglong; Rigden, Daniel J.; Wei, Zhen
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errSave
Microtubule association of TRIM3 revealed by differential extraction proteomics
errJOURNAL OF CELL SCIENCE
IF3.6
err2024-01-31
err0
errOAAI
errGlover, Hannah L.; Mendes, Marta; Gomes-Neto, Joana; Rusilowicz-Jones, Emma, V; Rigden, Daniel J.; Dittmar, Gunnar; Urbe, Sylvie; Clague, Michael J.
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errSave
The 2024 Nucleic Acids Research database issue and the online molecular biology database collection
errNUCLEIC ACIDS RESEARCH
IF13.1
err2023-11-30
err1
errOAAI
errRigden, Daniel J.; Fernandez, Xose M.
errShare
errSave
CASP15 cryo-EM protein and RNA targets: Refinement and analysis using experimental maps
errPROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS
IF2.8
err2023-11-23
err3
errOAAI
errMulvaney, Thomas; Kretsch, Rachael C.; Elliott, Luc; Beton, Joseph G.; Kryshtafovych, Andriy; Rigden, Daniel J.; Das, Rhiju; Topf, Maya
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errSave

Research Directions

No research directions
Co-authors
Cooperation Journals
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