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J

Jules Samaran

machine learning for integrative genomics group

7H-index
13Paper Count
1.2KCitation Count
Published Papers 5
Publication Date
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STORIES: learning cell fate landscapes from spatial transcriptomics using optimal transport
errNature Methods
IF32.1
err2025-11-03
err0
errOAAI
errGeert-Jan Huizing; Jules Samaran; Daniele Capocefalo; Anna Audit; Gabriel Peyré; Laura Cantini
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scPRINT: pre-training on 50 million cells allows robust gene network predictions
errNATURE COMMUNICATIONS
IF15.7
err2025-04-16
err0
errOAAI
errKalfon, Jeremie; Samaran, Jules; Peyre, Gabriel; Cantini, Laura
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scConfluence: single-cell diagonal integration with regularized Inverse Optimal Transport on weakly connected features
errNATURE COMMUNICATIONS
IF15.7
err2024-09-05
err1
errOAAI
errSamaran, Jules; Peyre, Gabriel; Cantini, Laura
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errSave
An Evaluation of Anomaly Detection and Diagnosis in Multivariate Time Series
errIEEE TRANSACTIONS ON NEURAL NETWORKS AND LEARNING SYSTEMS
IF8.9
err2022-06-01
err94
errOAAI
errGarg, Astha; Zhang, Wenyu; Samaran, Jules; Savitha, Ramasamy; Foo, Chuan-Sheng
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A Python library for probabilistic analysis of single-cell omics data
errNATURE BIOTECHNOLOGY
IF41.7
err2022-02-07
err208
errOAAI
errGayoso, Adam; Lopez, Romain; Xing, Galen; Boyeau, Pierre; Amiri, Valeh Valiollah Pour; Hong, Justin; Wu, Katherine; Jayasuriya, Michael; Mehlman, Edouard; Langevin, Maxime; Liu, Yining; Samaran, Jules; Misrachi, Gabriel; Nazaret, Achille; Clivio, Oscar; Xu, Chenling; Ashuach, Tal; Gabitto, Mariano; Lotfollahi, Mohammad; Svensson, Valentine; Beltrame, Eduardo da Veiga; Kleshchevnikov, Vitalii; Talavera-Lopez, Carlos; Pachter, Lior; Theis, Fabian J.; Streets, Aaron; Jordan, Michael I.; Regier, Jeffrey; Yosef, Nir
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Research Directions

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Co-authors
Cooperation Journals
M
Michael I. Jordan
H-index: 163 · Papers: 1.2K
F
Fabian J. Theis
H-index: 125 · Papers: 1.1K
L
Lior Pachter
H-index: 81 · Papers: 428
N
Nir Yosef
H-index: 73 · Papers: 310
G
Gabriel Peyré
H-index: 57 · Papers: 372
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