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J

Joshua Xu

us food & drug administration (fda)

31H-index
200Paper Count
5.9KCitation Count
Published Papers 66
Publication Date
Developing a Charlson Comorbidity Index for the American Indian Population Using the Epidemiologic Data from the Strong Heart Study
err2024-12-27
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errRogers, Paul; Merenda, Christine; Araojo, Richardae; Lee, Christine; Lolic, Milena; Zhang, Ying; Reese, Jessica; Malloy, Kimberly; Wang, Dong; Zou, Wen; Xu, Joshua; Lee, Elisa
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Description and Validation of a Novel AI Tool, LabelComp, for the Identification of Adverse Event Changes in FDA Labeling
err2024-07-31
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errNeyarapally, George A.; Wu, Leihong; Xu, Joshua; Zhou, Esther H.; Dang, Oanh; Lee, Joann; Mehta, Dharmang; Vaughn, Rochelle D.; Pinnow, Ellen; Fang, Hong
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Automatic text classification of drug-induced liver injury using document-term matrix and XGBoost
err2024-06-03
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errChen, Minjun; Wu, Yue; Wingerd, Byron; Liu, Zhichao; Xu, Joshua; Thakkar, Shraddha; Pedersen, Thomas J.; Donnelly, Tom; Mann, Nicholas; Tong, Weida; Wolfinger, Russell D.; Bao, Wenjun
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Towards accurate indel calling for oncopanel sequencing through an international pipeline competition at precisionFDA
err2024-04-08
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errGong, Binsheng; Lababidi, Samir; Kusko, Rebecca; Bouri, Khaled; Prezek, Sarah; Thovarai, Vishal; Prasanna, Anish; Maier, Ezekiel J.; Golkaram, Mahdi; Sun, Xingqiang; Kyriakidis, Konstantinos; Kitajima, Joao Paulo; Sahraeian, Sayed Mohammad Ebrahim; Guo, Yunfei; Johanson, Elaine; Jones, Wendell; Tong, Weida; Xu, Joshua
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Extend the benchmarking indel set by manual review using the individual cell line sequencing data from the Sequencing Quality Control 2 (SEQC2) project
err2024-03-25
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errGong, Binsheng; Li, Dan; Zhang, Yifan; Kusko, Rebecca; Lababidi, Samir; Cao, Zehui; Chen, Mingyang; Chen, Ning; Chen, Qiaochu; Chen, Qingwang; Dai, Jiacheng; Gan, Qiang; Gao, Yuechen; Guo, Mingkun; Hariani, Gunjan; He, Yujie; Hou, Wanwan; Jiang, He; Kushwaha, Garima; Li, Jian-Liang; Li, Jianying; Li, Yulan; Liu, Liang-Chun; Liu, Ruimei; Liu, Shiming; Meriaux, Edwin; Mo, Mengqing; Moore, Mathew; Moss, Tyler J.; Niu, Quanne; Patel, Ananddeep; Ren, Luyao; Saremi, Nedda F.; Shang, Erfei; Shang, Jun; Song, Ping; Sun, Siqi; Urban, Brent J.; Wang, Danke; Wang, Shangzi; Wen, Zhining; Xiong, Xiangyi; Yang, Jingcheng; Yin, Lihui; Zhang, Chao; Zhang, Ruolan; Bhandari, Ambica; Cai, Wanshi; Eterovic, Agda Karina; Megherbi, Dalila B.; Shi, Tieliu; Suo, Chen; Yu, Ying; Zheng, Yuanting; Novoradovskaya, Natalia; Sears, Renee L.; Shi, Leming; Jones, Wendell; Tong, Weida; Xu, Joshua
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Cancer driver mutations as quantitative biomarkers of cancer risk interspecies analyses using CarcSeq
err2024-03-22
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PREAI
errHarris, Kelly L.; Gong, Binsheng; Parsons, Barbara; Faske, Jennifer; Xu, Joshua
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Measurement and Mitigation of Bias in Artificial Intelligence: A Narrative Literature Review for Regulatory Science
err2023-12-12
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errGray, Magnus; Samala, Ravi; Liu, Qi; Skiles, Denny; Xu, Joshua; Tong, Weida; Wu, Leihong
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Quartet RNA reference materials improve the quality of transcriptomic data through ratio-based profiling (Sept, 10.1038/s41587-023-01867-9, 2023)
err2023-10-02
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errYu, Ying; Hou, Wanwan; Liu, Yaqing; Wang, Haiyan; Dong, Lianhua; Mai, Yuanbang; Chen, Qingwang; Li, Zhihui; Sun, Shanyue; Yang, Jingcheng; Cao, Zehui; Zhang, Peipei; Zi, Yi; Liu, Ruimei; Gao, Jian; Zhang, Naixin; Li, Jingjing; Ren, Luyao; Jiang, He; Shang, Jun; Zhu, Sibo; Wang, Xiaolin; Qing, Tao; Bao, Ding; Li, Bingying; Li, Bin; Suo, Chen; Pi, Yan; Wang, Xia; Dai, Fangping; Scherer, Andreas; Mattila, Pirkko; Han, Jinxiong; Zhang, Lijun; Jiang, Hui; Thierry-Mieg, Danielle; Thierry-Mieg, Jean; Xiao, Wenming; Hong, Huixiao; Tong, Weida; Wang, Jing; Li, Jinming; Fang, Xiang; Jin, Li; Xu, Joshua; Qian, Feng; Zhang, Rui; Shi, Leming; Zheng, Yuanting
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Quartet RNA reference materials improve the quality of transcriptomic data through ratio-based profiling
err2023-09-07
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errYu, Ying; Hou, Wanwan; Liu, Yaqing; Wang, Haiyan; Dong, Lianhua; Mai, Yuanbang; Chen, Qingwang; Li, Zhihui; Sun, Shanyue; Yang, Jingcheng; Cao, Zehui; Zhang, Peipei; Zi, Yi; Liu, Ruimei; Gao, Jian; Zhang, Naixin; Li, Jingjing; Ren, Luyao; Jiang, He; Shang, Jun; Zhu, Sibo; Wang, Xiaolin; Qing, Tao; Bao, Ding; Li, Bingying; Li, Bin; Suo, Chen; Pi, Yan; Wang, Xia; Dai, Fangping; Scherer, Andreas; Mattila, Pirkko; Han, Jinxiong; Zhang, Lijun; Jiang, Hui; Thierry-Mieg, Danielle; Thierry-Mieg, Jean; Xiao, Wenming; Hong, Huixiao; Tong, Weida; Wang, Jing; Li, Jinming; Fang, Xiang; Jin, Li; Xu, Joshua; Qian, Feng; Zhang, Rui; Shi, Leming; Zheng, Yuanting
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Multi-omics data integration using ratio-based quantitative profiling with Quartet reference materials
err2023-09-07
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errZheng, Yuanting; Liu, Yaqing; Yang, Jingcheng; Dong, Lianhua; Zhang, Rui; Tian, Sha; Yu, Ying; Ren, Luyao; Hou, Wanwan; Zhu, Feng; Mai, Yuanbang; Han, Jinxiong; Zhang, Lijun; Jiang, Hui; Lin, Ling; Lou, Jingwei; Li, Ruiqiang; Lin, Jingchao; Liu, Huafen; Kong, Ziqing; Wang, Depeng; Dai, Fangping; Bao, Ding; Cao, Zehui; Chen, Qiaochu; Chen, Qingwang; Chen, Xingdong; Gao, Yuechen; Jiang, He; Li, Bin; Li, Bingying; Li, Jingjing; Liu, Ruimei; Qing, Tao; Shang, Erfei; Shang, Jun; Sun, Shanyue; Wang, Haiyan; Wang, Xiaolin; Zhang, Naixin; Zhang, Peipei; Zhang, Ruolan; Zhu, Sibo; Scherer, Andreas; Wang, Jiucun; Wang, Jing; Huo, Yinbo; Liu, Gang; Cao, Chengming; Shao, Li; Xu, Joshua; Hong, Huixiao; Xiao, Wenming; Liang, Xiaozhen; Lu, Daru; Jin, Li; Tong, Weida; Ding, Chen; Li, Jinming; Fang, Xiang; Shi, Leming
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Correcting batch effects in large-scale multiomics studies using a reference-material-based ratio method
err2023-09-07
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errYu, Ying; Zhang, Naixin; Mai, Yuanbang; Ren, Luyao; Chen, Qiaochu; Cao, Zehui; Chen, Qingwang; Liu, Yaqing; Hou, Wanwan; Yang, Jingcheng; Hong, Huixiao; Xu, Joshua; Tong, Weida; Dong, Lianhua; Shi, Leming; Fang, Xiang; Zheng, Yuanting
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A Weakly Supervised Deep Learning Framework for Whole Slide Classification to Facilitate Digital Pathology in Animal Study
err2023-08-04
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errBussola, Nicole; Xu, Joshua; Wu, Leihong; Gorini, Lorenzo; Zhang, Yifan; Furlanello, Cesare; Tong, Weida
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Single-cell RNA-sequencing and subcellular spatial transcriptomics facilitate the translation of liver microphysiological systems for regulatory application
err2023-07-01
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errLi, Dan; Fang, Zhou; Shi, Qiang; Zhang, Nicholas; Gong, Binsheng; Tong, Weida; Coskun, Ahmet F.; Xu, Joshua
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Development of benchmark datasets for text mining and sentiment analysis to accelerate regulatory literature review
err2023-01-01
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errWu, Leihong; Chen, Si; Guo, Lei; Shpyleva, Svitlana; Harris, Kelly; Fahmi, Tariq; Flanigan, Timothy; Tong, Weida; Xu, Joshua; Ren, Zhen
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Towards accurate and reliable resolution of structural variants for clinical diagnosis (vol 23, 68, 2022)
err2022-09-20
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errLiu, Zhichao; Roberts, Ruth; Mercer, Timothy R.; Xu, Joshua; Sedlazeck, Fritz J.; Tong, Weida
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Accurate species identification of food-contaminating beetles with quality-improved elytral images and deep learning
err2022-08-12
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errBisgin, Halil; Bera, Tanmay; Wu, Leihong; Ding, Hongjian; Bisgin, Neslihan; Liu, Zhichao; Pava-Ripoll, Monica; Barnes, Amy; Campbell, James F.; Vyas, Himansi; Furlanello, Cesare; Tong, Weida; Xu, Joshua
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Deep oncopanel sequencing reveals within block position-dependent quality degradation in FFPE processed samples
err2022-06-29
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errZhang, Yifan; Blomquist, Thomas M.; Kusko, Rebecca; Stetson, Daniel; Zhang, Zhihong; Yin, Lihui; Sebra, Robert; Gong, Binsheng; Lococo, Jennifer S.; Mittal, Vinay K.; Novoradovskaya, Natalia; Yeo, Ji-Youn; Dominiak, Nicole; Hipp, Jennifer; Raymond, Amelia; Qiu, Fujun; Arib, Hanane; Smith, Melissa L.; Brock, Jay E.; Farkas, Daniel H.; Craig, Daniel J.; Crawford, Erin L.; Li, Dan; Morrison, Tom; Tom, Nikola; Xiao, Wenzhong; Yang, Mary; Mason, Christopher E.; Richmond, Todd A.; Jones, Wendell; Johann, Donald J., Jr.; Shi, Leming; Tong, Weida; Willey, James C.; Xu, Joshua
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