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Temporal Regulation of Early-Stage Cytokine Expression in Diabetic Wound Healing Under Negative Pressure Wound Therapy Chiu, Hua-Sheng; Huang, Ting-Shuo; Chen, Chien-Tzung; Lin, Xin-Yu; Liao, Po-Cheng; Liou, Cai-Cin; Hsu, Chih-Chin; Somvanshi, Sonal; Sumazin, Pavel; Hsu, Pang-Hung; Sun, Chi-Chin; Shyu, Yu-Chiau Share Save
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Effective methods for bulk RNA-seq deconvolution using scnRNA-seq transcriptomes Cobos, Francisco Avila; Panah, Mohammad Javad Najaf; Epps, Jessica; Long, Xiaochen; Man, Tsz-Kwong; Chiu, Hua-Sheng; Chomsky, Elad; Kiner, Evgeny; Krueger, Michael J.; di Bernardo, Diego; Voloch, Luis; Molenaar, Jan; van Hooff, Sander R.; Westermann, Frank; Jansky, Selina; Redell, Michele L.; Mestdagh, Pieter; Sumazin, Pavel Share Save
The RNA Atlas expands the catalog of human non-coding RNAs (June, 10.1038/s41587-021-00936-1, 2021) Lorenzi, Lucia; Chiu, Hua-Sheng; Avila Cobos, Francisco; Gross, Stephen; Volders, Pieter-Jan; Cannoodt, Robrecht; Nuytens, Justine; Vanderheyden, Katrien; Anckaert, Jasper; Lefever, Steve; Tay, Aidan P.; de Bony, Eric J.; Trypsteen, Wim; Gysens, Fien; Vromman, Marieke; Goovaerts, Tine; Hansen, Thomas Birkballe; Kuersten, Scott; Nijs, Nele; Taghon, Tom; Vermaelen, Karim; Bracke, Ken R.; Saeys, Yvan; De Meyer, Tim; Deshpande, Nandan P.; Anande, Govardhan; Chen, Ting-Wen; Wilkins, Marc R.; Unnikrishnan, Ashwin; De Preter, Katleen; Kjems, Jorgen; Koster, Jan; Schroth, Gary P.; Vandesompele, Jo; Sumazin, Pavel; Mestdagh, Pieter Share Save
The RNA Atlas expands the catalog of human non-coding RNAs Lorenzi, Lucia; Chiu, Hua-Sheng; Avila Cobos, Francisco; Gross, Stephen; Volders, Pieter-Jan; Cannoodt, Robrecht; Nuytens, Justine; Vanderheyden, Katrien; Anckaert, Jasper; Lefever, Steve; Tay, Aidan P.; de Bony, Eric J.; Trypsteen, Wim; Gysens, Fien; Vromman, Marieke; Goovaerts, Tine; Hansen, Thomas Birkballe; Kuersten, Scott; Nijs, Nele; Taghon, Tom; Vermaelen, Karim; Bracke, Ken R.; Saeys, Yvan; De Meyer, Tim; Deshpande, Nandan P.; Anande, Govardhan; Chen, Ting-Wen; Wilkins, Marc R.; Unnikrishnan, Ashwin; De Preter, Katleen; Kjems, Jorgen; Koster, Jan; Schroth, Gary P.; Vandesompele, Jo; Sumazin, Pavel; Mestdagh, Pieter Share Save
Cell lines of the same anatomic site and histologic type show large variability in intrinsic radiosensitivity and relative biological effectiveness to protons and carbon ions Flint, David B.; Bright, Scott J.; McFadden, Conor H.; Konishi, Teruaki; Ohsawa, Daisuke; Turner, Broderick; Lin, Steven H.; Grosshans, David R.; Chiu, Hua-Sheng; Sumazin, Pavel; Shaitelman, Simona F.; Sawakuchi, Gabriel O. Share Save
Pan-cancer clinical and molecular analysis of racial disparities Lara, Olivia D.; Wang, Ying; Asare, Amma; Xu, Tao; Chiu, Hua-Sheng; Liu, Yuexin; Hu, Wei; Sumazin, Pavel; Uppal, Shitanshu; Zhang, Lin; Rauh-Hain, J. Alejandro; Sood, Anil K. Share Save
Integrative analysis identifies lincRNAs up- and downstream of neuroblastoma driver genes (vol 9, 5685, 2019) Rombaut, Dries; Chiu, Hua-Sheng; Decaesteker, Bieke; Everaert, Celine; Yigit, Nurten; Peltier, Agathe; Janoueix-Lerosey, Isabelle; Bartenhagen, Christoph; Fischer, Matthias; Roberts, Stephen; D'Haene, Nicky; De Preter, Katleen; Speleman, Frank; Denecker, Geertrui; Sumazin, Pavel; Vandesompele, Jo; Lefever, Steve; Mestdagh, Pieter Share Save
Integrative analysis identifies lincRNAs up- and downstream of neuroblastoma driver genes Rombautd, Dries; Chiu, Hua-Sheng; Decaesteker, Bieke; Everaert, Celine; Yigit, Nurten; Peltier, Agathe; Janoueix, Isabelle; Bartenhagen, Christoph; Fischer, Matthias; Roberts, Stephen; D'Haene, Nicky; De Preter, Katleen; Speleman, Frank; Denecker, Geertrui; Sumazin, Pavel; Vandesompele, Jo; Lefever, Steve; Mestdagh, Pieter Share Save
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The number of titrated microRNA species dictates ceRNA regulation Chiu, Hua-Sheng; Martinez, Maria Rodriguez; Komissarova, Elena V.; Llobet-Navas, David; Bansal, Mukesh; Paull, Evan O.; Silva, Jose; Yang, Xuerui; Sumazin, Pavel; Califano, Andrea Share Save
Genomic, Pathway Network, and Immunologic Features Distinguishing Squamous Carcinomas Campbell, Joshua D.; Yau, Christina; Bowlby, Reanne; Liu, Yuexin; Brennan, Kevin; Fan, Huihui; Taylor, Alison M.; Wang, Chen; Walter, Vonn; Akbani, Rehan; Byers, Lauren Averett; Creighton, Chad J.; Coarfa, Cristian; Shih, Juliann; Cherniack, Andrew D.; Gevaert, Olivier; Prunello, Marcos; Shen, Hui; Anur, Pavana; Chen, Jianhong; Cheng, Hui; Hayes, D. Neil; Bullman, Susan; Pedamallu, Chandra Sekhar; Ojesina, Akinyemi I.; Sadeghi, Sara; Mungall, Karen L.; Robertson, A. Gordon; Benz, Christopher; Schultz, Andre; Kanchi, Rupa S.; Gay, Carl M.; Hegde, Apurva; Diao, Lixia; Wang, Jing; Ma, Wencai; Sumazin, Pavel; Chiu, Hua-Sheng; Chen, Ting-Wen; Gunaratne, Preethi; Donehower, Larry; Rader, Janet S.; Zuna, Rosemary; Al-Ahmadie, Hikmat; Lazar, Alexander J.; Flores, Elsa R.; Tsai, Kenneth Y.; Zhou, Jane H.; Rustgi, Anil K.; Drill, Esther; Shen, Ronglei; Wong, Christopher K.; Stuart, Joshua M.; Laird, Peter W.; Hoadley, Katherine A.; Weinstein, John N.; Peto, Myron; Pickering, Curtis R.; Chen, Zhong; Van Waes, Carter Share Save
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Cupid: simultaneous reconstruction of microRNA-target and ceRNA networks Chiu, Hua-Sheng; Llobet-Navas, David; Yang, Xuerui; Chung, Wei-Jen; Ambesi-Impiombato, Alberto; lyer, Archana; Kim, Hyunjae Ryan; Seviour, Elena G.; Luo, Zijun; Sehga, Vasudha; Moss, Tyler; Lu, Yiling; Ram, Prahlad; Silva, Jose; Mills, Gordon B.; Califano, Andrea; Sumazin, Pavel Share Save
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