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Barry Demchak

University of California System

21H-index
63Paper Count
5.2KCitation Count
Published Papers 10
Publication Date
Cytoscape Automation: empowering workflow-based network analysis
err2019-09-02
err1.0K
errOAAI
errOtasek, David; Morris, John H.; Boucas, Jorge; Pico, Alexander R.; Demchak, Barry
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DDOT: A Swiss Army Knife for Investigating Data-Driven Biological Ontologies
err2019-03-01
err13
errOAAI
errYu, Michael Ku; Ma, Jianzhu; Ono, Keiichiro; Zheng, Fan; Fong, Samson H.; Gary, Aaron; Chen, Jing; Demchak, Barry; Pratt, Dexter; Ideker, Trey
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Using deep learning to model the hierarchical structure and function of a cell
err2018-03-05
err292
errOAAI
errMa, Jianzhu; Yu, Michael Ku; Fong, Samson; Ono, Keiichiro; Sage, Eric; Demchak, Barry; Sharan, Roded; Ideker, Trey
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NDEx 2.0: A Clearinghouse for Research on Cancer Pathways
err2017-10-31
err46
errOAAI
errPratt, Dexter; Chen, Jing; Pillich, Rudolf; Rynkov, Vladimir; Gary, Aaron; Demchak, Barry; Ideker, Trey
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Active Interaction Mapping Reveals the Hierarchical Organization of Autophagy
err2017-02-01
err33
errOAAI
errKramer, Michael H.; Farre, Jean-Claude; Mitra, Koyel; Yu, Michael Ku; Ono, Keiichiro; Demchak, Barry; Licon, Katherine; Flagg, Mitchell; Balakrishnan, Rama; Cherry, J. Michael; Subramani, Suresh; Ideker, Trey
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Integrative genomic analysis by interoperation of bioinformatics tools in GenomeSpace
err2016-01-18
err34
errOAAI
errQu, Kun; Garamszegi, Sara; Wu, Felix; Thorvaldsdottir, Helga; Liefeld, Ted; Ocana, Marco; Borges-Rivera, Diego; Pochet, Nathalie; Robinson, James T.; Demchak, Barry; Hull, Tim; Ben-Artzi, Gil; Blankenberg, Daniel; Barber, Galt P.; Lee, Brian T.; Kuhn, Robert M.; Nekrutenko, Anton; Segal, Eran; Ideker, Trey; Reich, Michael; Regev, Aviv; Chang, Howard Y.; Mesirov, Jill P.
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NDEx, the Network Data Exchange
err2015-10-01
err184
errOAAI
errPratt, Dexter; Chen, Jing; Welker, David; Rivas, Ricardo; Pillich, Rudolf; Rynkov, Vladimir; Ono, Keiichiro; Miello, Carol; Hicks, Lyndon; Szalma, Sandor; Stojmirovic, Aleksandar; Dobrin, Radu; Braxenthaler, Michael; Kuentzer, Jan; Demchak, Barry; Ideker, Trey
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The anatomy of successful computational biology software (vol 31, pg 894, 2013)
err2014-06-09
err0
errOAAI
errAltschul, Stephen; Demchak, Barry; Durbin, Richard; Gentleman, Robert; Krzywinski, Martin; Li, Heng; Nekrutenko, Anton; Robinson, James; Rasband, Wayne; Taylor, James; Trapnell, Cole
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NeXO Web: the NeXO ontology database and visualization platform
err2013-11-23
err9
errOAAI
errDutkowski, Janusz; Ono, Keiichiro; Kramer, Michael; Yu, Michael; Pratt, Dexter; Demchak, Barry; Ideker, Trey
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The anatomy of successful computational biology software
err2013-10-08
err20
errOAAI
errAltschul, Stephen; Demchak, Barry; Durbin, Richard; Gentleman, Robert; Krzywinski, Martin; Li, Heng; Nekrutenko, Anton; Robinson, James; Rasband, Wayne; Taylor, James; Trapnell, Cole
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