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Overture: an open-source genomics data platform Shiell, Mitchell; Bajari, Rosi; Andric, Dusan; Eubank, Jon; Chan, Brandon F.; Richardsson, Anders J.; Ali, Azher; Allabadi, Bashar; Alturmessov, Yelizar; Baker, Jared; Catton, Ann; Cullion, Kim; DeMaria, Daniel; Dos Santos, Patrick; Feher, Henrich; Gerthoffert, Francois; Ha, Minh; Haw, Robin A.; Kachru, Atul; Lepsa, Alexandru; Li, Alexis; Mistry, Rakesh N.; Nahal-Bose, Hardeep K.; Pejovic, Aleksandra; Rich, Samantha; Rivera, Leonardo; Schuette, Ciaran; Su, Edmund; Tisma, Robert; Uddin, Jaser; Wang, Chang; Wilmer, Alex N.; Xiang, Linda; Zhang, Junjun; Stein, Lincoln D.; Ferretti, Vincent; Courtot, Melanie; Yung, Christina K. Share Save
The GA4GH Phenopacket schema defines a computable representation of clinical data Jacobsen, Julius O. B.; Baudis, Michael; Baynam, Gareth S.; Beckmann, Jacques S.; Beltran, Sergi; Buske, Orion J.; Callahan, Tiffany J.; Chute, Christopher G.; Courtot, Melanie; Danis, Daniel; Elemento, Olivier; Essenwanger, Andrea; Freimuth, Robert R.; Gargano, Michael A.; Groza, Tudor; Hamosh, Ada; Harris, Nomi L.; Kaliyaperumal, Rajaram; Lloyd, Kevin C. Kent; Khalifa, Aly; Krawitz, Peter M.; Koeler, Sebastian; Laraway, Brian J.; Lehvaslaiho, Heikki; Matalonga, Leslie; McMurry, Julie A.; Metke-Jimenez, Alejandro; Mungall, Christopher J.; Munoz-Torres, Monica C.; Ogishima, Soichi; Papakonstantinou, Anastasios; Piscia, Davide; Pontikos, Nikolas; Queralt-Rosinach, Nuria; Roos, Marco; Sass, Julian; Schofield, Paul N.; Seelow, Dominik; Siapos, Anastasios; Smedley, Damian; Smith, Lindsay D.; Steinhaus, Robin; Sundaramurthi, Jagadish Chandrabose; Swietlik, Emilia M.; Thun, Sylvia; Vasilevsky, Nicole A.; Wagner, Alex H.; Warner, Jeremy L.; Weiland, Claus; Haendel, Melissa A.; Robinson, Peter N. Share Save
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Empirical validation of an automated approach to data use oversight Cabili, Moran N.; Lawson, Jonathan; Saltzman, Andrea; Rushton, Greg; O'Rourke, Pearl; Wilbanks, John; Rodriguez, Laura Lyman; Nyronen, Tommi; Courtot, Melanie; Donnelly, Stacey; Philippakis, Anthony A. Share Save
The Data Use Ontology to streamline responsible access to human biomedical datasets Lawson, Jonathan; Cabili, Moran N.; Kerry, Giselle; Boughtwood, Tiffany; Thorogood, Adrian; Alper, Pinar; Bowers, Sarion R.; Boyles, Rebecca R.; Brookes, Anthony J.; Brush, Matthew; Burdett, Tony; Clissold, Hayley; Donnelly, Stacey; Dyke, Stephanie O. M.; Freeberg, Mallory A.; Haendel, Melissa A.; Hata, Chihir; Holub, Petr; Jeanson, Francis; Jene, Aina; Kawashima, Minae; Kawashima, Shuichi; Konopko, Melissa; Kyomugisha, Irene; Li, Haoyuan; Linden, Mikael; Rodriguez, Laura Lyman; Morita, Mizuki; Mulder, Nicola; Muller, Jean; Nagaie, Satoshi; Nasir, Jamal; Ogishima, Soichi; Wang, Vivian Ota; Paglione, Laura D.; Pandya, Ravi N.; Parkinson, Helen; Philippakis, Anthony A.; Prasser, Fabian; Rambla, Jordi; Reinold, Kathy; Rushton, Gregory A.; Saltzman, Andrea; Saunders, Gary; Sofia, Heidi J.; Spalding, John D.; Swertz, Morris A.; Tulchinsky, Ilia; Enckevort, Esther J. van; Varma, Susheel; Voisin, Craig; Yamamoto, Natsuko; Yamasaki, Chisato; Zass, Lyndon; Auvil, Jaime M. Guidry; Nyronen, Tommi H.; Courtot, Melanie Share Save
GA4GH: International policies and standards for data sharing across genomic research and healthcare Rehm, Heidi L.; Page, Angela J. H.; Smith, Lindsay; Adams, Jeremy B.; Alterovitz, Gil; Babb, Lawrence J.; Barkley, Maxmillian P.; Baudis, Michael; Beauvais, Michael J. S.; Beck, Tim; Beckmann, Jacques S.; Beltran, Sergi; Bernick, David; Bernier, Alexander; Bonfield, James K.; Boughtwood, Tiffany F.; Bourque, Guillaume; Bowers, Sarion R.; Brookes, Anthony J.; Brudno, Michael; Brush, Matthew H.; Bujold, David; Burdett, Tony; Buske, Orion J.; Cabili, Moran N.; Cameron, Daniel L.; Carroll, Robert J.; Casas-Silva, Esmeralda; Chakravarty, Debyani; Chaudhari, Bimal P.; Chen, Shu Hui; Cherry, J. Michael; Chung, Justina; Cline, Melissa; Clissold, Hayley L.; Cook-Deegan, Robert M.; Courtot, Melanie; Cunningham, Fiona; Cupak, Miro; Davies, Robert M.; Denisko, Danielle; Doerr, Megan J.; Dolman, Lena I.; Dove, Edward S.; Dursi, L. Jonathan; Dyke, Stephanie O. M.; Eddy, James A.; Eilbeck, Karen; Ellrott, Kyle P.; Fairley, Susan; Fakhro, Khalid A.; Firth, Helen V.; Fitzsimons, Michael S.; Fiume, Marc; Flicek, Paul; Fore, Ian M.; Freeberg, Mallory A.; Freimuth, Robert R.; Fromont, Lauren A.; Fuerth, Jonathan; Gaff, Clara L.; Gan, Weiniu; Ghanaim, Elena M.; Glazer, David; Green, Robert C.; Griffith, Malachi; Griffith, Obi L.; Grossman, Robert L.; Groza, Tudor; Auvil, Jaime M. Guidry; Guigo, Roderic; Gupta, Dipayan; Haendel, Melissa A.; Hamosh, Ada; Hansen, David P.; Hart, Reece K.; Hartley, Dean Mitchell; Haussler, David; Hendricks-Sturrup, Rachele M.; Ho, Calvin W. L.; Hobb, Ashley E.; Hoffman, Michael M.; Hofmann, Oliver M.; Holub, Petr; Hsu, Jacob Shujui; Hubaux, Jean-Pierre; Hunt, Sarah E.; Husami, Ammar; Jacobsen, Julius O.; Jamuar, Saumya S.; Janes, Elizabeth L.; Jeanson, Francis; Jene, Aina; Johns, Amber L.; Joly, Yann; Jones, Steven J. M.; Kanitz, Alexander; Kato, Kazuto; Keane, Thomas M.; Kekesi-Lafrance, Kristina; Kelleher, Jerome; Kerry, Giselle; Khor, Seik-Soon; Knoppers, Bartha M.; Konopko, Melissa A.; Kosaki, Kenjiro; Kuba, Martin; Lawson, Jonathan; Leinonen, Rasko; Li, Stephanie; Lin, Michael F.; Linden, Mikael; Liu, Xianglin; Liyanage, Isuru Udara; Lopez, Javier; Lucassen, Anneke M.; Lukowski, Michael; Mann, Alice L.; Marshall, John; Mattioni, Michele; Metke-Jimenez, Alejandro; Middleton, Anna; Milne, Richard J.; Molnar-Gabor, Fruzsina; Mulder, Nicola; Munoz-Torres, Monica C.; Nag, Rishi; Nakagawa, Hidewaki; Nasir, Jamal; Navarro, Arcadi; Nelson, Tristan H.; Niewielska, Ania; Nisselle, Amy; Niu, Jeffrey; Nyronen, Tommi H.; O'Connor, Brian D.; Oesterle, Sabine; Ogishima, Soichi; Wang, Vivian Ota; Paglione, Laura A. D.; Palumbo, Emilio; Parkinson, Helen E.; Philippakis, Anthony A.; Pizarro, Angel D.; Prlic, Andreas; Rambla, Jordi; Rendon, Augusto; Rider, Renee A.; Robinson, Peter N.; Rodarmer, Kurt W.; Rodriguez, Laura Lyman; Rubin, Alan F.; Rueda, Manuel; Rushton, Gregory A.; Ryan, Rosalyn S.; Saunders, Gary I.; Schuilenburg, Helen; Schwede, Torsten; Scollen, Serena; Senf, Alexander; Sheffield, Nathan C.; Skantharajah, Neerjah; Smith, Albert V.; Sofia, Heidi J.; Spalding, Dylan; Spurdle, Amanda B.; Stark, Zornitza; Stein, Lincoln D.; Suematsu, Makoto; Tan, Patrick; Tedds, Jonathan A.; Thomson, Alastair A.; Thorogood, Adrian; Tickle, Timothy L.; Tokunaga, Katsushi; Tomroos, Juha; Torrents, David; Upchurch, Sean; Valencia, Alfonso; Guimera, Roman Valls; Vamathevan, Jessica; Varma, Susheel; Vears, Danya F.; Viner, Coby; Voisin, Craig; Wagner, Alex H.; Wallace, Susan E.; Walsh, Brian P.; Williams, Marc S.; Winkler, Eva C.; Wold, Barbara J.; Wood, Grant M.; Woolley, J. Patrick; Yamasaki, Chisato; Yates, Andrew D.; Yung, Christina K.; Zass, Lyndon J.; Zaytseva, Ksenia; Zhang, Junjun; Goodhand, Peter; North, Kathryn; Birney, Ewan Share Save
GA4GH Passport standard for digital identity and access permissions Voisin, Craig; Linden, Mikael; Dyke, Stephanie O. M.; Bowers, Sarion R.; Alper, Pinar; Barkley, Maxmillian P.; Bernick, David; Chao, Jianpeng; Courtot, Melanie; Jeanson, Francis; Konopko, Melissa A.; Kuba, Martin; Lawson, Jonathan; Leinonen, Jaakko; Li, Stephanie; Wang, Vivian Ota; Philippakis, Anthony A.; Reinold, Kathy; Rushton, Gregory A.; Spalding, J. Dylan; Tornroos, Juha; Tulchinsky, Ilya; Auvil, Jaime M. Guidry; Nyronen, Tommi H. Share Save
OBO Foundry in 2021: operationalizing open data principles to evaluate ontologies Jackson, Rebecca; Matentzoglu, Nicolas; Overton, James A.; Vita, Randi; Balhoff, James P.; Buttigieg, Pier Luigi; Carbon, Seth; Courtot, Melanie; Diehl, Alexander D.; Dooley, Damion M.; Duncan, William D.; Harris, Nomi L.; Haendel, Melissa A.; Lewis, Suzanna E.; Natale, Darren A.; Osumi-Sutherland, David; Ruttenberg, Alan; Schriml, Lynn M.; Smith, Barry; Stoeckert, Christian J., Jr.; Vasilevsky, Nicole A.; Walls, Ramona L.; Zheng, Jie; Mungall, Christopher J.; Peters, Bjoern Share Save
The European Nucleotide Archive in 2020 Harrison, Peter W.; Ahamed, Alisha; Aslam, Raheela; Alako, Blaise T. F.; Burgin, Josephine; Buso, Nicola; Courtot, Melanie; Fan, Jun; Gupta, Dipayan; Haseeb, Muhammad; Holt, Sam; Ibrahim, Talal; Ivanov, Eugene; Jayathilaka, Suran; Kadhirvelu, Vishnukumar Balavenkataraman; Kumar, Manish; Lopez, Rodrigo; Kay, Simon; Leinonen, Rasko; Liu, Xin; O'Cathail, Colman; Pakseresht, Amir; Park, Youngmi; Pesant, Stephane; Rahman, Nadim; Rajan, Jeena; Sokolov, Alexey; Vijayaraja, Senthilnathan; Waheed, Zahra; Zyoud, Ahmad; Burdett, Tony; Cochrane, Guy Share Save
BioSamples database: an updated sample metadata hub Courtot, Melanie; Cherubin, Luca; Faulconbridge, Adam; Vaughan, Daniel; Green, Matthew; Richardson, David; Harrison, Peter; Whetzel, Patricia L.; Parkinson, Helen; Burdett, Tony Share Save
Prospects for Fungal Bioremediation of Acidic Radioactive Waste Sites: Characterization and Genome Sequence of Rhodotorula taiwanensis MD1149 Tkavc, Rok; Matrosova, Vera Y.; Grichenko, Olga E.; Gostincar, Cene; Volpe, Robert P.; Klimenkova, Polina; Gaidamakova, Elena K.; Zhou, Carol E.; Stewart, Benjamin J.; Lyman, Mathew G.; Malfatti, Stephanie A.; Rubinfeld, Bonnee; Courtot, Melanie; Singh, Jatinder; Dalgard, Clifton L.; Hamilton, Theron; Frey, Kenneth G.; Gunde-Cimerman, Nina; Dugan, Lawrence; Daly, Michael J. Share Save
CARD 2017: expansion and model-centric curation of the comprehensive antibiotic resistance database Jia, Baofeng; Raphenya, Amogelang R.; Alcock, Brian; Waglechner, Nicholas; Guo, Peiyao; Tsang, Kara K.; Lago, Briony A.; Dave, Biren M.; Pereira, Sheldon; Sharma, Arjun N.; Doshi, Sachin; Courtot, Melanie; Lo, Raymond; Williams, Laura E.; Frye, Jonathan G.; Elsayegh, Tariq; Sardar, Daim; Westman, Erin L.; Pawlowski, Andrew C.; Johnson, Timothy A.; Brinkman, Fiona S. L.; Wright, Gerard D.; McArthur, Andrew G. Share Save
Ontobee: A linked ontology data server to support ontology term dereferencing, linkage, query and integration Ong, Edison; Xiang, Zuoshuang; Zhao, Bin; Liu, Yue; Lin, Yu; Zheng, Jie; Mungall, Chris; Courtot, Melanie; Ruttenberg, Alan; He, Yongqun Share Save
From data repositories to submission portals: rethinking the role of domain-specific databases in CollecTF Kilic, Sefa; Sagitova, Dinara M.; Wolfish, Shoshannah; Bely, Benoit; Courtot, Melanie; Ciufo, Stacy; Tatusova, Tatiana; O'Donovan, Claire; Chibucos, Marcus C.; Martin, Maria J.; Erill, Ivan Share Save
Controlled vocabularies and semantics in systems biology Courtot, Melanie; Juty, Nick; Knuepfer, Christian; Waltemath, Dagmar; Zhukova, Anna; Draeger, Andreas; Dumontier, Michel; Finney, Andrew; Golebiewski, Martin; Hastings, Janna; Hoops, Stefan; Keating, Sarah; Kell, Douglas B.; Kerrien, Samuel; Lawson, James; Lister, Allyson; Lu, James; Machne, Rainer; Mendes, Pedro; Pocock, Matthew; Rodriguez, Nicolas; Villeger, Alice; Wilkinson, Darren J.; Wimalaratne, Sarala; Laibe, Camille; Hucka, Michael; Le Novere, Nicolas Share Save
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The Systems Biology Graphical Notation (vol 27, pg 735, 2009) Le Novere, Nicolas; Hucka, Michael; Mi, Huaiyu; Moodie, Stuart; Schreiber, Falk; Sorokin, Anatoly; Demir, Emek; Wegner, Katja; Aladjem, Mirit I.; Wimalaratne, Sarala M.; Bergman, Frank T.; Gauges, Ralph; Ghazal, Peter; Kawaji, Hideya; Li, Lu; Matsuoka, Yukiko; Villeger, Alice; Boyd, Sarah E.; Calzone, Laurence; Courtot, Melanie; Dogrusoz, Ugur; Freeman, Tom C.; Funahashi, Akira; Ghosh, Samik; Jouraku, Akiya; Kim, Sohyoung; Kolpakov, Fedor; Luna, Augustin; Sahle, Sven; Schmidt, Esther; Watterson, Steven; Wu, Guanming; Goryanin, Igor; Kell, Douglas B.; Sander, Chris; Sauro, Herbert; Snoep, Jacky L.; Kohn, Kurt; Kitano, Hiroaki Share Save
The Systems Biology Graphical Notation Le Novere, Nicolas; Hucka, Michael; Mi, Huaiyu; Moodie, Stuart; Schreiber, Falk; Sorokin, Anatoly; Demir, Emek; Wegner, Katja; Aladjem, Mirit I.; Wimalaratne, Sarala M.; Bergman, Frank T.; Gauges, Ralph; Ghazal, Peter; Kawaji, Hideya; Li, Lu; Matsuoka, Yukiko; Villeger, Alice; Boyd, Sarah E.; Calzone, Laurence; Courtot, Melanie; Dogrusoz, Ugur; Freeman, Tom C.; Funahashi, Akira; Ghosh, Samik; Jouraku, Akiya; Kim, Sohyoung; Kolpakov, Fedor; Luna, Augustin; Sahle, Sven; Schmidt, Esther; Watterson, Steven; Wu, Guanming; Goryanin, Igor; Kell, Douglas B.; Sander, Chris; Sauro, Herbert; Snoep, Jacky L.; Kohn, Kurt; Kitano, Hiroaki Share Save
BioModels Database:: a free, centralized database of curated, published, quantitative kinetic models of biochemical and cellular systems Le Novere, Nicolas; Bornstein, Benjamin; Broicher, Alexander; Courtot, Melanie; Donizelli, Marco; Dharuri, Harish; Li, Lu; Sauro, Herbert; Schilstra, Maria; Shapiro, Bruce; Snoep, Jacky L.; Hucka, Michael Share Save
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