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Systems biology graphical notation: process description language level 1 version 2.1 Balci, Hasan; Rougny, Adrien; Overall, Rupert; Balaur, Irina; Blinov, Michael L.; Borlinghaus, Hanna; Demir, Emek; Drager, Andreas; Haw, Robin; Mazein, Alexander; Mi, Huaiyu; Moodie, Stuart; Schreiber, Falk; Sorokin, Anatoly; Toure, Vasundra; Villeger, Alice; Czauderna, Tobias; Dogrusoz, Ugur; Luna, Augustin Share Save
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cBioPortal for Cancer Genomics Mazor, Tali; de Bruijn, Ino; AlHamad, Rima; Chennault, Calla; Dubin, Corey; Easton-Marks, Jeremy; Fu, Zhaoyuan; Gross, Benjamin; Haynes, Charles; Higgins, David M.; Hwee, Jason; Jagannathan, Prasanna K.; Kalafati, Mirella; Kalletla, Karthik; Ko, James; Kuijpers, Tim; Kumar, Sowmiyaa; Kumari, Priti; Kundra, Ritika; Lai, Bryan; Li, Xiang; Lindsay, James; Lisman, Aaron; Lu, Qi-Xuan; Madupuri, Ramyasree; Ochoa, Angelica; Ozgul, Yusuf Z.; Plantalech, Oleguer; Pon, Matthijs N.; Satravada, Baby A.; Singh, Jessica; Sumer, Selcuk Onur; van Nierop, Pim; Vleugels, Floris; Wang, Avery; Wilson, Manda; Zhang, Hongxin; Zhao, Gaofei; Dogrusoz, Ugur; Heath, Allison; Resnick, Adam; Pugh, Trevor J.; Sander, Chris; Cerami, Ethan; Gao, Jianjiong; Schultz, Nikolaus Share Save
Analysis and Visualization of Longitudinal Genomic and Clinical Data from the AACR Project GENIE Biopharma Collaborative in cBioPortal de Bruijn, Ino; Kundra, Ritika; Mastrogiacomo, Brooke; Tran, Thinh Ngoc; Sikina, Luke; Mazor, Tali; Li, Xiang; Ochoa, Angelica; Zhao, Gaofei; Lai, Bryan; Abeshouse, Adam; Baiceanu, Diana; Ciftci, Ersin; Dogrusoz, Ugur; Dufilie, Andrew; Erkoc, Ziya; Lara, Elena Garcia; Fu, Zhaoyuan; Gross, Benjamin; Haynes, Charles; Heath, Allison; Higgins, David; Jagannathan, Prasanna; Kalletla, Karthik; Kumari, Priti; Lindsay, James; Lisman, Aaron; Leenknegt, Bas; Lukasse, Pieter; Madela, Divya; Madupuri, Ramyasree; van Nierop, Pim; Plantalech, Oleguer; Quach, Joyce; Resnick, Adam C.; Rodenburg, Sander Y. A.; Satravada, Baby A.; Schaeffer, Fedde; Sheridan, Robert; Singh, Jessica; Sirohi, Rajat; Sumer, Selcuk Onur; van Hagen, Sjoerd; Wang, Avery; Wilson, Manda; Zhang, Hongxin; Zhu, Kelsey; Rusk, Nicole; Brown, Samantha; Lavery, Jessica A.; Panageas, Katherine S.; Rudolph, Julia E.; LeNoue-Newton, Michele L.; Warner, Jeremy L.; Guo, Xindi; Hunter-Zinck, Haley; Yu, Thomas V.; Pilai, Shirin; Nichols, Chelsea; Gardos, Stuart M.; Philip, John; Kehl, Kenneth L.; Riely, Gregory J.; Schrag, Deborah; Lee, Jocelyn; Fiandalo, Michael V.; Sweeney, Shawn M.; Pugh, Trevor J.; Sander, Chris; Cerami, Ethan; Gao, Jianjiong; Schultz, Nikolaus Share Save
cBioPortal for Cancer Genomics de Bruijn, Ino; Mazor, Tali; Abeshouse, Adam; Baiceanu, Diana; Carrero, Stephanie; Lara, Elena Garcia; Gross, Benjamin; Higgins, David M.; Jagannathan, Prasanna K.; Kumari, Priti; Kundra, Ritika; Lai, Bryan; Li, Xiang; Lindsay, James; Lisman, Aaron; Madala, Divya; Madupuri, Ramyasree; Ochoa, Angelica; Ozgul, Yusuf Ziya; Plantalech, Oleguer; Rodenburg, Sander; Satravada, Baby Anusha; Sheridan, Robert; Sikina, Lucas; Singh, Jessica; Sumer, S. Onur; Sun, Yichao; van Nierop, Pim; Wang, Avery; Wilson, Manda; Zhang, Hongxin; Zhao, Gaofei; van Hagen, Sjoerd; Dogrusoz, Ugur; Heath, Allison; Resnick, Adam; Pugh, Trevor J.; Sander, Chris; Cerami, Ethan; Gao, Jianjiong; Schultz, Nikolaus Share Save
Causal interactions from proteomic profiles: Molecular data meet pathway knowledge Babur, Ozgun; Luna, Augustin; Korkut, Anil; Durupinar, Funda; Siper, Metin Can; Dogrusoz, Ugur; Jacome, Alvaro Sebastian Vaca; Peckner, Ryan; Christianson, Karen E.; Jaffe, Jacob D.; Spellman, Paul T.; Aslan, Joseph E.; Sander, Chris; Demir, Emek Share Save
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The cBioPortal for Cancer Genomics Gao, Jianjiong; Mazor, Tali; Abeshouse, Adam; de Bruijn, Ino; Gross, Benjamin; Kalletla, Karthik; Kumari, Priti; Kundra, Ritika; Li, Xiang; Lindsay, James; Lisman, Aaron; Lukasse, Pieter; Madupuri, Ramyasree; Ochoa, Angelica; Plantalech, Oleguer; Rodenburg, Sander; Schaeffer, Fedde; Sheridan, Robert; Sikina, Lucas; Su, Jing; Sumer, S. Onur; Sun, Yichao; van Dijk, Paul; van Hagen, Sjoerd; van Nierop, Pim; Wang, Avery; Wilson, Manda; Zhang, Hongxin; Zhao, Gaofei; Zhu, Kelsey; van Bochove, Kees; Dogrusoz, Ugur; Heath, Allison; Resnick, Adam; Pugh, Trevor J.; Sander, Chris; Cerami, Ethan; Schultz, Nikolaus Share Save
Pathway Commons 2019 Update: integration, analysis and exploration of pathway data Rodchenkov, Igor; Babur, Ozgun; Luna, Augustin; Aksoy, Bulent Arman; Wong, Jeffrey, V; Fong, Dylan; Franz, Max; Siper, Metin Can; Cheung, Manfred; Wrana, Michael; Mistry, Harsh; Mosier, Logan; Dlin, Jonah; Wen, Qizhi; O'Callaghan, Caitlin; Li, Wanxin; Elder, Geoffrey; Smith, Peter T.; Dallago, Christian; Cerami, Ethan; Gross, Benjamin; Dogrusoz, Ugur; Demir, Emek; Bader, Gary D.; Sander, Chris Share Save
The cBioPortal for cancer genomics Gao, Jianjiong; Mazor, Tali; Abeshouse, Adam; Ciftci, Ersin; de Bruijn, Ino; Gross, Benjamin; Kalletla, Karthik; Kumari, Priti; Kundra, Ritika; Lindsay, James; Lisman, Aaron; Lukasse, Pieter; Madupuri, Ramyasree; Ochoa, Angelica; Plantalech, Oleguer; Raman, Pichai; Schaeffer, Fedde; Sheridan, Robert; Su, Jing; Sumer, S. Onur; Sun, Yichao; Tan, Sander; van Hagen, Sjoerd; Wang, Avery; Wilson, Manda; Zhang, Hongxin; Zhao, Gaofei; Zhu, Kelsey; van Bochove, Kees; Dogrusoz, Ugur; Pugh, Trevor J.; Resnick, Adam; Sander, Chris; Cerami, Ethan; Schultz, Nikolaus Share Save
The cBioPortal for Cancer Genomics: An intuitive open-source platform for exploration, analysis and visualization of cancer genomics data Gao, Jianjiong; Mazor, Tali; Ciftci, Ersin; Raman, Pichai; Lukasse, Pieter; Bahceci, Istemi; Sigaras, Alexandros; Abeshouse, Adam; De Bruijn, Ino; Gross, Benjamin; Kundra, Ritika; Lisman, Aaron; Ochoa, Angelica; Sheridan, Robert; Su, Jing; Sumer, Selcuk O.; Sun, Yichao; Wang, Avery; Wang, Jiaojiao; Wilson, Manda; Zhang, Hongxin; Kumari, Priti; Lindsay, James; Kalletla, Karthik; Zhu, Kelsey; Plantalech, Oleguer; Schaeffer, Fedde; Tan, Sander; Zaal, Dionne; van Hagen, Sjoerd; van Bochove, Kees; Dogrusoz, Ugur; Pugh, Trevor J.; Resnick, Adam; Sander, Chris; Schultz, Nikolaus; Cerami, Ethan Share Save
The molecular landscape of oncogenic signaling pathways in The Cancer Genome Atlas Sanchez-Vega, Francisco; Mina, Marco; Armenia, Joshua; Chatila, Walid K.; Luna, Augustin; La, Konnor; Dimitriadoy, Sofia; Liu, David L.; Kantheti, Havish S.; Heins, Zachary; Ochoa, Angelica; Gross, Benjamin; Gao, Jianjiong; Zhang, Hongxin; Kundra, Ritika; Kandoth, Cyriac; Bahceci, Istemi; Dervishi, Leonard; Dogrusoz, Ugur; Zhou, Wanding; Shen, Hui; Laird, Peter W.; Berger, Alice H.; Bivona, Trever G.; Lazar, Alexander J.; Hammer, Gary; Giordano, Thomas; Kwong, Lawrence; McArthur, Grant; Huang, Chenfei; Frederick, Mitchell J.; McCormick, Frank; Meyerson, Matthew; Van Allen, Eliezer; Cherniack, Andrew D.; Ciriello, Giovanni; Sander, Chris; Schultz, Nikolaus Share Save
Systems medicine disease maps: community-driven comprehensive representation of disease mechanisms Mazein, Alexander; Ostaszewski, Marek; Kuperstein, Inna; Watterson, Steven; Le Novere, Nicolas; Lefaudeux, Diane; De Meulder, Bertrand; Pellet, Johann; Balaur, Irina; Saqi, Mansoor; Nogueira, Maria Manuela; He, Feng; Parton, Andrew; Lemonnier, Nathanael; Gawron, Piotr; Gebel, Stephan; Hainaut, Pierre; Ollert, Markus; Dogrusoz, Ugur; Barillot, Emmanuel; Zinovyev, Andrei; Schneider, Reinhard; Balling, Rudi; Auffray, Charles Share Save
Community-driven roadmap for integrated disease maps Ostaszewski, Marek; Gebel, Stephan; Kuperstein, Inna; Mazein, Alexander; Zinovyev, Andrei; Dogrusoz, Ugur; Hasenauer, Jan; Fleming, Ronan M. T.; Le Novere, Nicolas; Gawron, Piotr; Ligon, Thomas; Niarakis, Anna; Nickerson, David; Weindl, Daniel; Balling, Rudi; Barillot, Emmanuel; Auffray, Charles; Schneider, Reinhard Share Save
The cBioPortal for Cancer Genomics: an open source platform for accessing and interpreting complex cancer genomics data in the era of precision medicine Gao, Jianjiong; Ciftci, Ersin; Raman, Pichai; Lukasse, Pieter; Bahceci, Istemi; Abeshouse, Adam; Chen, Hsiao-Wei; de Bruijn, Ino; Gross, Benjamin; Heins, Zachary; Kundra, Ritika; Lisman, Aaron; Ochoa, Angelica; Sheridan, Robert; Sumer, Onur; Sun, Yichao; Wang, Jiaojiao; Wilson, Manda; Zhang, Hongxin; Xu, James; Dufilie, Andy; Kumari, Priti; Lindsay, James; Cros, Anthony; Kalletla, Karthik; Schaeffer, Fedde; Tan, Sander; van Hagen, Sjoerd; Reis-Filho, Jorge; van Bochove, Kees; Dogrusoz, Ugur; Pugh, Trevor; Resnick, Adam; Sander, Chris; Cerami, Ethan; Schultz, Nikolaus Share Save
The cBioPortal for cancer genomics and its application in precision oncology Gao, Jianjiong; Lindsay, James; Watt, Stuart; Bahceci, Istemi; Lukasse, Pieter; Abeshouse, Adam; Chen, Hsiao-Wei; de Bruijn, Inc; Gross, Benjamin; Li, Dong; Kundra, Ritika; Heins, Zachary; Reis-Filho, Jorge; Sumer, Onur; Sun, Yichao; Wang, Jiaojiao; Wang, Qingguo; Zhang, Hongxin; Kumari, Priti; Sahin, M. Furkan; de Ridder, Sander; Schaeffer, Fedde; van Bochove, Kees; Dogrusoz, Ugur; Pugh, Trevor; Sander, Chris; Cerami, Ethan; Schultz, Nikolaus Share Save
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