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Conserved chromatin and repetitive patterns reveal slow genome evolution in frogs Bredeson, Jessen V.; Mudd, Austin B.; Medina-Ruiz, Sofia; Mitros, Therese; Smith, Owen Kabnick; Miller, Kelly E.; Lyons, Jessica B.; Batra, Sanjit S.; Park, Joseph; Berkoff, Kodiak C.; Plott, Christopher; Grimwood, Jane; Schmutz, Jeremy; Aguirre-Figueroa, Guadalupe; Khokha, Mustafa K.; Lane, Maura; Philipp, Isabelle; Laslo, Mara; Hanken, James; Kerdivel, Gwenneg; Buisine, Nicolas; Sachs, Laurent M.; Buchholz, Daniel R.; Kwon, Taejoon; Smith-Parker, Heidi; Gridi-Papp, Marcos; Ryan, Michael J.; Denton, Robert D.; Malone, John H.; Wallingford, John B.; Straight, Aaron F.; Heald, Rebecca; Hockemeyer, Dirk; Harland, Richard M.; Rokhsar, Daniel S. Share Save
Tracing cancer evolution and heterogeneity using Hi-C Erdmann-Pham, Dan Daniel; Batra, Sanjit Singh; Turkalo, Timothy K.; Durbin, James; Blanchette, Marco; Yeh, Iwei; Shain, Hunter; Bastian, Boris C.; Song, Yun S.; Rokhsar, Daniel S.; Hockemeyer, Dirk Share Save
Candidate genes for field resistance to cassava brown streak disease revealed through the analysis of multiple data sources Ferguson, Morag E.; Eyles, Rodney P.; Garcia-Oliveira, Ana Luisa; Kapinga, Fortunus; Masumba, Esther A.; Amuge, Teddy; Bredeson, Jessen V.; Rokhsar, Daniel S.; Lyons, Jessica B.; Shah, Trushar; Rounsley, Steve; Mkamilo, Geoffrey Share Save
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CRISPR-Cas9-mediated knockout of CYP79D1 and CYP79D2 in cassava attenuates toxic cyanogen production Gomez, Michael A.; Berkoff, Kodiak C.; Gill, Baljeet K.; Iavarone, Anthony T.; Lieberman, Samantha E.; Ma, Jessica M.; Schultink, Alex; Karavolias, Nicholas G.; Wyman, Stacia K.; Chauhan, Raj Deepika; Taylor, Nigel J.; Staskawicz, Brian J.; Cho, Myeong-Je; Rokhsar, Daniel S.; Lyons, Jessica B. Share Save
Genome and transcriptome mechanisms driving cephalopod evolution Albertin, Caroline B.; Medina-Ruiz, Sofia; Mitros, Therese; Schmidbaur, Hannah; Sanchez, Gustavo; Wang, Z. Yan; Grimwood, Jane; Rosenthal, Joshua J. C.; Ragsdale, Clifton W.; Simakov, Oleg; Rokhsar, Daniel S. Share Save
Chromosome evolution and the genetic basis of agronomically important traits in greater yam Bredeson, Jessen, V; Lyons, Jessica B.; Oniyinde, Ibukun O.; Okereke, Nneka R.; Kolade, Olufisayo; Nnabue, Ikenna; Nwadili, Christian O.; Hribova, Eva; Parker, Matthew; Nwogha, Jeremiah; Shu, Shengqiang; Carlson, Joseph; Kariba, Robert; Muthemba, Samuel; Knop, Katarzyna; Barton, Geoffrey J.; Sherwood, Anna, V; Lopez-Montes, Antonio; Asiedu, Robert; Jamnadass, Ramni; Muchugi, Alice; Goodstein, David; Egesi, Chiedozie N.; Featherston, Jonathan; Asfaw, Asrat; Simpson, Gordon G.; Dolezel, Jaroslav; Hendre, Prasad S.; Van Deynze, Allen; Kumar, Pullikanti Lava; Obidiegwu, Jude E.; Bhattacharjee, Ranjana; Rokhsar, Daniel S. Share Save
Deeply conserved synteny and the evolution of metazoan chromosomes Simakov, Oleg; Bredeson, Jessen; Berkoff, Kodiak; Marletaz, Ferdinand; Mitros, Therese; Schultz, Darrin T.; O'Connell, Brendan L.; Dear, Paul; Martinez, Daniel E.; Steele, Robert E.; Green, Richard E.; David, Charles N.; Rokhsar, Daniel S. Share Save
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Analysis of meiosis in Pristionchus pacificus reveals plasticity in homolog pairing and synapsis in the nematode lineage Rillo-Bohn, Regina; Adilardi, Renzo; Mitros, Therese; Avsaroglu, Baris; Stevens, Lewis; Kohler, Simone; Bayes, Joshua; Wang, Clara; Lin, Sabrina; Baskevitch, K. Alienor; Rokhsar, Daniel S.; Dernburg, Abby F. Share Save
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Current status and impending progress for cassava structural genomics (Feb, 10.1007/s11103-020-01104-w, 2021) Lyons, Jessica B.; Bredeson, Jessen V.; Mansfeld, Ben N.; Bauchet, Guillaume Jean; Berry, Jeffrey; Boyher, Adam; Mueller, Lukas A.; Rokhsar, Daniel S.; Bart, Rebecca S. Share Save
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Genome biology of the paleotetraploid perennial biomass crop Miscanthus Mitros, Therese; Session, Adam M.; James, Brandon T.; Wu, Guohong Albert; Belaffif, Mohammad B.; Clark, Lindsay V.; Shu, Shengqiang; Dong, Hongxu; Barling, Adam; Holmes, Jessica R.; Mattick, Jessica E.; Bredeson, Jessen V.; Liu, Siyao; Farrar, Kerrie; Glowacka, Katarzyna; Jezowski, Stanislaw; Barry, Kerrie; Chae, Won Byoung; Juvik, John A.; Gifford, Justin; Oladeinde, Adebosola; Yamada, Toshihiko; Grimwood, Jane; Putnam, Nicholas H.; De Vega, Jose; Barth, Susanne; Klaas, Manfred; Hodkinson, Trevor; Li, Laigeng; Jin, Xiaoli; Peng, Junhua; Yu, Chang Yeon; Heo, Kweon; Yoo, Ji Hye; Ghimire, Bimal Kumar; Donnison, Iain S.; Schmutz, Jeremy; Hudson, Matthew E.; Sacks, Erik J.; Moose, Stephen P.; Swaminathan, Kankshita; Rokhsar, Daniel S. Share Save
A chromosome-scale reference genome of trifoliate orange (Poncirus trifoliata) provides insights into disease resistance, cold tolerance and genome evolution inCitrus Peng, Ze; Bredeson, Jessen, V; Wu, Guohong A.; Shu, Shengqiang; Rawat, Nidhi; Du, Dongliang; Parajuli, Saroj; Yu, Qibin; You, Qian; Rokhsar, Daniel S.; Gmitter, Frederick G., Jr.; Deng, Zhanao Share Save
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Gradual polyploid genome evolution revealed by pan-genomic analysis of Brachypodium hybridum and its diploid progenitors Gordon, Sean P.; Contreras-Moreira, Bruno; Levy, Joshua J.; Djamei, Armin; Czedik-Eysenberg, Angelika; Tartaglio, Virginia S.; Session, Adam; Martin, Joel; Cartwright, Amy; Katz, Andrew; Singan, Vasanth R.; Goltsman, Eugene; Barry, Kerrie; Vinh Ha Dinh-Thi; Chalhoub, Boulos; Diaz-Perez, Antonio; Sancho, Ruben; Lusinska, Joanna; Wolny, Elzbieta; Nibau, Candida; Doonan, John H.; Mur, Luis A. J.; Plott, Chris; Jenkins, Jerry; Hazen, Samuel P.; Lee, Scott J.; Shu, Shengqiang; Goodstein, David; Rokhsar, Daniel; Schmutz, Jeremy; Hasterok, Robert; Catalan, Pilar; Vogel, John P. Share Save
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