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J

Jerry Jenkins

HudsonAlpha Institute for Biotechnology

65H-index
238Paper Count
2.3WCitation Count
Published Papers 93
Publication Date
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Assembly of Silphium interspecific hybrid genomes opens the genus to phylogenomics, ecogenomics, and molecular breeding
errNature Communications
IF15.7
err2026-07-09
err0
errOAAI
errRenan S. Souza; Josh P. Clevenger; Jerry Jenkins; Walid Korani; Jeremy Schmutz; Jane Grimwood; Christopher Plott; Yaniv Brandvain; Kathryn Turner; Allison J. Miller; Brent S. Hulke; Louis F. Nastasi; Ebony G. Murrell; Lori H. Handley; Jenell Webber; Lori Beth Boston; Stella Woeltjen; Matthew J. Rubin; Betsy Trana; Erin Howard; Ashlyn Bazzel; Alex Harkess; David L. Van Tassel
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Structure and sequence evolution in the pennycress (Thlaspi arvense) pangenome
errNew Phytologist
IF8.1
err2026-04-02
err0
errOAAI
errKevin A. Bird; Joanna L. Rifkin; Chloee M. McLaughlin; Avril M. Harder; Pawan Basnet; Ella Katz; Tomáš Brůna; Kerrie Barry; LoriBeth Boston; Christopher Daum; Jie Guo; Anna Lipzen; Christopher Plott; Jerry W. Jenkins; Rachel Walstead; Shanmugam Rajasekar; Jayson Talag; Katherine Frels; Kathleen Greenham; Shelby Ellison; Jane Grimwood; Jeremy Schmutz; Patrick P. Edger; J. Chris Pires; John T. Lovell; Daniel J. Kliebenstein
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Gene and genome duplications have contrasting impacts on biosynthetic and flower developmental pathways in California poppy
errPlant Cell
IF11.6
err2026-03-01
err0
PREAI
errRoessner, Le-Han; Roessner, Clemens; Kong, Doudou; Lotz, Dominik; Weisert, Andrea; Yamada, Yasuyuki; Sato, Fumihiko; Davies, Kevin; Rupp, Oliver; Fuchs, Joerg; Baldwin, Ethan A.; Lovell, John; McKain, Michael R.; Barry, Kerrie; Bruna, Tomas; Talag, Jayson; Jenkins, Jerry; Walstead, Rachel; Grimwood, Jane; Schmutz, Jeremy; Leebens-Mack, James H.; Becker, Annette
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Genomic approaches to accelerate American chestnut restoration
errScience
IF45.8
err2026-02-12
err0
PREAI
errJared W. Westbrook; Joanna Malukiewicz; Qian Zhang; Avinash Sreedasyam; Jerry W. Jenkins; Vasiliy Lakoba; Sara Fitzsimmons; Jamie Van Clief; Kendra Collins; Stephen Hoy; Cassie Stark; Lake Graboski; Eric Jenkins; Thomas M. Saielli; Benjamin T. Jarrett; Lucinda J. Wigfield; Lauren M. Kerwien; Ciera Wilbur; Alexander M. Sandercock; J. Hill Craddock; Susanna Keriö; Tetyana Zhebentyayeva; Shenghua Fan; Austin M. Thomas; Albert G. Abbott; C. Dana Nelson; Xiaoxia Xia; James R. McKenna; Caleb Kell; Melissa Williams; LoriBeth Boston; Christopher Plott; Florian Carle; Jack Swatt; Jack Ostroff; Steven N. Jeffers; Kathleen McKeever; Erica Smith; Thomas J. Ellis; Joseph B. James; Paul Sisco; Andrew Newhouse; Erik Carlson; William A. Powell; Frederick V. Hebard; John Scrivani; Caragh Heverly; Martin Cipollini; Brian Clark; Eric Evans; Bruce Levine; John E. Carlson; David Goodstein; Jack Orebaugh; Zamin K. Yang; Madhavi Z. Martin; Joanna Tannous; Tomás A. Rush; Nancy L. Engle; Timothy J. Tschaplinski; Jane Grimwood; Jeremy Schmutz; Jason A. Holliday; John T. Lovell
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Multi-season analysis reveals hundreds of drought-responsive genes in sorghum
errThe Plant Journal
IF0
err2026-02-02
err0
errOAAI
errBenjamin Cole; Wenxin Zhang; Junming Shi; Hao Wang; Christopher Baker; Nelle Varoquaux; Joy Hollingsworth; Robert Hutmacher; Jeffery Dahlberg; Grady Pierroz; Kerrie W. Barry; Vasanth Singan; Yuko Yoshinaga; Christopher Daum; Matthew Zane; Matthew Blow; Ronan O’Malley; Shengqiang Shu; Jerry W. Jenkins; John T. Lovell; Jeremy Schmutz; John W. Taylor; Devin Coleman-Derr; Axel Visel; Peggy G. Lemaux; Elizabeth Purdom; John P. Vogel
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errSave
The architecture of resilience: a genome assembly of Myrothamnus flabellifolia sheds light on desiccation tolerance and sex determination
errNew Phytologist
IF8.1
err2025-11-02
err0
errOAAI
errRose A. Marks; John T. Lovell; Sarah B. Carey; Llewelyn Van Der Pas; Nyaradzai M. Chimukuche; Tomáš Brůna; Christopher Plott; Jenell Webber; Anna Lipzen; Juying Yan; Diane Bauer; Joanne Bentley; Jayson Talag; Chloee M. McLaughlin; Kerrie Barry; Jane Grimwood; Jerry W. Jenkins; Jeremy Schmutz; Alex Harkess; Robert VanBuren; James Leebens-Mack; Jill M. Farrant
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Draft genome assembly and annotation of Haematococcus lacustris strain Liv1, an industrial astaxanthin-producing microalga
errMICROBIOLOGY RESOURCE ANNOUNCEMENTS
IF0.6
err2025-10-01
err0
PREAI
errLashbrook, Michael J.; Adesanya, Jeremiah A.; Talag, Jayson; Lail, Kathleen; Lee, Raymond; Lipzen, Anna M.; Guo, Jie; Jenkins, Jerry; Kuo, Alan; Pennacchio, Christa; Grigoriev, Igor V.; Stuart, Rhona K.; Ward, Christopher S.
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Genome-resolved biogeography of Phaeocystales, cosmopolitan bloom-forming algae
errNature Communications
IF15.7
err2025-09-29
err0
errOAAI
errZoltán Füssy; Robert H. Lampe; Kevin R. Arrigo; Kerrie Barry; Margaret M. Brisbin; Corina P. D. Brussaard; Johan Decelle; Colomban de Vargas; Giacomo R. DiTullio; Liam D. H. Elbourne; Marc E. Frischer; David M. Goodstein; Igor V. Grigoriev; Richard D. Hayes; Adam L. Healey; Chase C. James; Jerry W. Jenkins; Caroline Juery; Manish Kumar; Adam B. Kustka; Florian Maumus; Anna M. G. Novák Vanclová; Miroslav Oborník; Ian T. Paulsen; Ian Probert; Mak A. Saito; Jeremy Schmutz; Tomáš Skalický; Diego Tec-Campos; Hannah Tomelka; Pavlína Věchtová; Pratap Venepally; Brendan Wilson-Mortier; Karsten Zengler; Hong Zheng; Andrew E. Allen
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Insights into convergent evolution of cosexuality in liverworts from the Marchantia quadrata genome
errCELL REPORTS
IF6.9
err2025-04-01
err0
errOAAI
errPotente, Giacomo; Yasui, Yukiko; Shimokawa, Eita; Jenkins, Jerry; Walstead, Rachel N.; Grimwood, Jane; Schmutz, Jeremy; Leebens-Mack, Jim; Bruna, Tomas; Kaur, Navneet; Lee, Raymond; Zama, Sumaira; Tanaka, Tomoha; Umeya, Yuka; Kawamura, Shogo; Yamato, Katsuyuki T.; Yamaguchi, Katsushi; Shigenobu, Shuji; Shimamura, Masaki; Kohchi, Takayuki; Szovenyi, Peter
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ZW sex chromosome structure in Amborella trichopoda
errNATURE PLANTS
IF13.6
err2024-11-25
err1
errOAAI
errCarey, Sarah B.; Akoezbek, Laramie; Lovell, John T.; Jenkins, Jerry; Healey, Adam L.; Shu, Shengqiang; Grabowski, Paul; Yocca, Alan; Stewart, Ada; Jones, Teresa; Barry, Kerrie; Rajasekar, Shanmugam; Talag, Jayson; Scutt, Charlie; Lowry, Porter P.; Munzinger, Jerome; Knox, Eric B.; Soltis, Douglas E.; Soltis, Pamela S.; Grimwood, Jane; Schmutz, Jeremy; Leebens-Mack, James; Harkess, Alex
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An Improved Chromosome-scale Genome Assembly and Population Genetics resource for Populus tremula
errPHYSIOLOGIA PLANTARUM
IF3.6
err2024-09-16
err1
errOAAI
errRobinson, Kathryn M.; Schiffthaler, Bastian; Liu, Hui; Rydman, Sara M.; Rendon-Anaya, Martha; Kalman, Teitur Ahlgren; Kumar, Vikash; Canovi, Camilla; Bernhardsson, Carolina; Delhomme, Nicolas; Jenkins, Jerry; Wang, Jing; Mahler, Niklas; Richau, Kerstin H.; Stokes, Victoria; A'Hara, Stuart; Cottrell, Joan; Coeck, Kizi; Diels, Tim; Vandepoele, Klaas; Mannapperuma, Chanaka; Park, Eung-Jun; Plaisance, Stephane; Jansson, Stefan; Ingvarsson, Par K.; Street, Nathaniel R.
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Assembly, comparative analysis, and utilization of a single haplotype reference genome for soybean
errPLANT JOURNAL
IF5.7
err2024-09-14
err3
errOAAI
errEspina, Mary Jane C.; Lovell, John T.; Jenkins, Jerry; Shu, Shengqiang; Sreedasyam, Avinash; Jordan, Brandon D.; Webber, Jenell; Boston, LoriBeth; Bruna, Tomas; Talag, Jayson; Goodstein, David; Grimwood, Jane; Stacey, Gary; Cannon, Steven B.; Lorenz, Aaron J.; Schmutz, Jeremy; Stupar, Robert M.
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Unlocking saponin biosynthesis in soapwort
errNATURE CHEMICAL BIOLOGY
IF13.7
err2024-07-23
err0
errOAAI
errJo, Seohyun; El-Demerdash, Amr; Owen, Charlotte; Srivastava, Vikas; Wu, Dewei; Kikuchi, Shingo; Reed, James; Hodgson, Hannah; Harkess, Alex; Shu, Shengqiang; Plott, Chris; Jenkins, Jerry; Williams, Melissa; Boston, Lori-Beth; Lacchini, Elia; Qu, Tongtong; Goossens, Alain; Grimwood, Jane; Schmutz, Jeremy; Leebens-Mack, Jim; Osbourn, Anne
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errSave
Genome resources for three modern cotton lines guide future breeding efforts
errNATURE PLANTS
IF13.6
err2024-05-30
err1
errOAAI
errSreedasyam, Avinash; Lovell, John T.; Mamidi, Sujan; Khanal, Sameer; Jenkins, Jerry W.; Plott, Christopher; Bryan, Kempton B.; Li, Zhigang; Shu, Shengqiang; Carlson, Joseph; Goodstein, David; De Santiago, Luis; Kirkbride, Ryan C.; Calleja, Sebastian; Campbell, Todd; Koebernick, Jenny C.; Dever, Jane K.; Scheffler, Jodi A.; Pauli, Duke; Jenkins, Johnie N.; Mccarty, Jack C.; Williams, Melissa; Boston, Loribeth; Webber, Jenell; Udall, Joshua A.; Chen, Z. Jeffrey; Bourland, Fred; Stiller, Warwick N.; Saski, Christopher A.; Grimwood, Jane; Chee, Peng W.; Jones, Don C.; Schmutz, Jeremy
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Seagrass genomes reveal ancient polyploidy and adaptations to the marine environment
errNATURE PLANTS
IF13.6
err2024-01-26
err10
errOAAI
errMa, Xiao; Vanneste, Steffen; Chang, Jiyang; Ambrosino, Luca; Barry, Kerrie; Bayer, Till; Bobrov, Alexander A.; Boston, LoriBeth; Campbell, Justin E.; Chen, Hengchi; Chiusano, Maria Luisa; Dattolo, Emanuela; Grimwood, Jane; He, Guifen; Jenkins, Jerry; Khachaturyan, Marina; Marin-Guirao, Lazaro; Mesterhazy, Attila; Muhd, Danish-Daniel; Pazzaglia, Jessica; Plott, Chris; Rajasekar, Shanmugam; Rombauts, Stephane; Ruocco, Miriam; Scott, Alison; Tan, Min Pau; Van de Velde, Jozefien; Vanholme, Bartel; Webber, Jenell; Wong, Li Lian; Yan, Mi; Sung, Yeong Yik; Novikova, Polina; Schmutz, Jeremy; Reusch, Thorsten B. H.; Procaccini, Gabriele; Olsen, Jeanine L.; Van de Peer, Yves
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Extraordinary preservation of gene collinearity over three hundred million years revealed in homosporous lycophytes
errPROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
IF9.1
err2024-01-18
err5
errOAAI
errLi, Cheng; Wickell, David; Kuo, Li-Yaung; Chen, Xueqing; Nie, Bao; Liao, Xuezhu; Peng, Dan; Ji, Jiaojiao; Jenkins, Jerry; Williams, Mellissa; Shu, Shengqiang; Plott, Christopher; Barry, Kerrie; Rajasekar, Shanmugam; Grimwood, Jane; Han, Xiaoxu; Sun, Shichao; Hou, Zhuangwei; He, Weijun; Dai, Guanhua; Sun, Cheng; Schmutz, Jeremy; Leebens-Mack, James H.; Li, Fay-Wei; Wang, Li
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errSave
The protist Aurantiochytrium has universal subtelomeric rDNAs and is a host for mirusviruses
errCURRENT BIOLOGY
IF7.5
err2023-12-01
err5
errOAAI
errCollier, Jackie L.; Rest, Joshua S.; Gallot-Lavallee, Lucie; Lavington, Erik; Kuo, Alan; Jenkins, Jerry; Plott, Chris; Pangilinan, Jasmyn; Daum, Chris; Grigoriev, Igor V.; Filloramo, Gina V.; Vanclova, Anna M. G. Novak; Archibald, John M.
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Haplotype-resolved genome assembly of Populus tremula x P. alba reveals aspen-specific megabase satellite DNA
errPLANT JOURNAL
IF5.7
err2023-09-07
err14
errOAAI
errZhou, Ran; Jenkins, Jerry W.; Zeng, Yibing; Shu, Shengqiang; Jang, Hosung; Harding, Scott A.; Williams, Melissa; Plott, Christopher; Barry, Kerrie W.; Koriabine, Maxim; Amirebrahimi, Mojgan; Talag, Jayson; Rajasekar, Shanmugam; Grimwood, Jane; Schmitz, Robert J.; Dawe, R. Kelly; Schmutz, Jeremy; Tsai, Chung-Jui
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errSave
Ocean current patterns drive the worldwide colonization of eelgrass (Zostera marina) (vol 9, pg 1207, 2023)
errNATURE PLANTS
IF13.6
err2023-08-07
err0
errOAAI
errYu, Lei; Khachaturyan, Marina; Matschiner, Michael; Healey, Adam; Bauer, Diane; Cameron, Brenda; Cusson, Mathieu; Duffy, J. Emmett; Fodrie, F. Joel; Gill, Diana; Grimwood, Jane; Hori, Masakazu; Hovel, Kevin; Hughes, A. Randall; Jahnke, Marlene; Jenkins, Jerry; Keymanesh, Keykhosrow; Kruschel, Claudia; Mamidi, Sujan; Menning, Damian M. M.; Moksnes, Per-Olav; Nakaoka, Masahiro; Pennacchio, Christa; Reiss, Katrin; Rossi, Francesca; Ruesink, Jennifer L. L.; Schultz, Stewart T. T.; Talbot, Sandra; Unsworth, Richard; Ward, David H. H.; Dagan, Tal; Schmutz, Jeremy; Eisen, Jonathan A.; Stachowicz, John J.; Van de Peer, Yves; Olsen, Jeanine L.; Reusch, Thorsten B. H.
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errSave
JGI Plant Gene Atlas: an updateable transcriptome resource to improve functional gene descriptions across the plant kingdom
errNUCLEIC ACIDS RESEARCH
IF13.1
err2023-08-01
err19
errOAAI
errSreedasyam, Avinash; Plott, Christopher; Hossain, Md Shakhawat; Lovell, John T.; Grimwood, Jane; Jenkins, Jerry W.; Daum, Christopher; Barry, Kerrie; Carlson, Joseph; Shu, Shengqiang; Phillips, Jeremy; Amirebrahimi, Mojgan; Zane, Matthew; Wang, Mei; Goodstein, David; Haas, Fabian B.; Hiss, Manuel; Perroud, Pierre-Francois; Jawdy, Sara S.; Yang, Yongil; Hu, Rongbin; Johnson, Jenifer; Kropat, Janette; Gallaher, Sean D.; Lipzen, Anna; Shakirov, Eugene, V; Weng, Xiaoyu; Torres-Jerez, Ivone; Weers, Brock; Conde, Daniel; Pappas, Marilia R.; Liu, Lifeng; Muchlinski, Andrew; Jiang, Hui; Shyu, Christine; Huang, Pu; Sebastian, Jose; Laiben, Carol; Medlin, Alyssa; Carey, Sankalpi; Carrell, Alyssa A.; Chen, Jin-Gui; Perales, Mariano; Swaminathan, Kankshita; Allona, Isabel; Grattapaglia, Dario; Cooper, Elizabeth A.; Tholl, Dorothea; Vogel, John P.; Weston, David J.; Yang, Xiaohan; Brutnell, Thomas P.; Kellogg, Elizabeth A.; Baxter, Ivan; Udvardi, Michael; Tang, Yuhong; Mockler, Todd C.; Juenger, Thomas E.; Mullet, John; Rensing, Stefan A.; Tuskan, Gerald A.; Merchant, Sabeeha S.; Stacey, Gary; Schmutz, Jeremy
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Research Directions

No research directions
Co-authors
Cooperation Journals
P
Pamela S. Soltis
H-index: 193 · Papers: 1.5K
D
Detlef Weigel
H-index: 163 · Papers: 944
R
Rajeev K. Varshney
H-index: 139 · Papers: 1.5K
C
Carlos D. Bustamante
H-index: 138 · Papers: 519
Y
Yves Van de Peer
H-index: 133 · Papers: 770
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