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R

Raunak Shrestha

university of queensland

36H-index
274Paper Count
1.5WCitation Count
Published Papers 30
Publication Date
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Identifying therapeutic targets in low-grade serous ovarian carcinomas with no specific molecular profile
errJournal of Pathology
IF5.2
err2026-05-01
err0
PREAI
errPishas, Kathleen, I; Cowley, Karla J.; Marinovic, Evanny; Kobel, Martin; Llaurado-Fernandez, Marta; Kim, Hannah; Bao, Shaine Chenxin; Mizikovsky, Dalia; Palpant, Nathan J.; Shrestha, Raunak; Vary, Robert; Luu, Jennii; Meunier, Liliane; Semple, Timothy; Blancafort, Pilar; Golden, Emily; Cohen, Paul A.; Carey, Mark S.; Campbell, Ian G.; Simpson, Kaylene J.; Cheasley, Dane
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Convergent evolution of complex structural variants drives therapy resistance in metastatic prostate cancer
errGenome Biology
IF9.4
err2026-04-15
err0
errOAAI
errThaidy Moreno-Rodriguez; Meng Zhang; Arian Lundberg; Raunak Shrestha; Martin Sjöström; Anupama Pasam; Joanna Chan; Lisa Devereux; Adam Foye; Xiaolin Zhu; Alana S. Weinstein; Anna S. Trigos; Alexander W. Wyatt; Joshi J. Alumkal; Eric J. Small; Rahul Aggarwal; Scott M. Dehm; Matthew L. Bootsma; Shuang G. Zhao; Mathieu Lupien; Felix Y. Feng; Shahneen Sandhu; David A. Quigley
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errSave
Genome-scale CRISPR screens identify PTGES3 as a direct modulator of androgen receptor function in advanced prostate cancer
errNature Genetics
IF29
err2025-11-05
err0
errOAAI
errHaolong Li; James E. Melnyk; Becky Xu Hua Fu; Raunak Shrestha; Meng Zhang; Martin Sjöström; Siyu Feng; Jasmine A. Anderson; Wanting Han; Lisa N. Chesner; Hyun Jin Shin; Tatyanah Farsh; Humberto J. Suarez; Seema Nath; Jonathan Chou; Rajdeep Das; Emily A. Egusa; Marsha Calvert; Audrey Kishishita; Abhilash Barpanda; Jun Zhu; Ashutosh Maheshwari; William S. Chen; Mohammed Alshalalfa; Aidan Winters; Junjie T. Hua; Tianyi Liu; Elai Davicioni; Arun P. Wiita; Bradley A. Stohr; Javed Siddiqui; Bo Huang; Eric J. Small; Kevan M. Shokat; Peter S. Nelson; David A. Quigley; Elizabeth V. Wasmuth; Luke A. Gilbert; Felix Y. Feng
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errSave
Extracellular vesicles-mediated delivery of CRISPR machinery silences androgen receptor in castration-resistant prostate cancer cells
errMolecular Therapy
IF12
err2025-09-27
err0
PREAI
errChenming Ye; Yongjie Ma; Raunak Shrestha; Jingwen Cai; Yutao Liu; Liu Peng; Jindan Yu; Houjian Cai
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Genomic and transcriptomic features of androgen receptor signaling inhibitor resistance in metastatic castration-resistant prostate cancer
errJOURNAL OF CLINICAL INVESTIGATION
IF13.6
err2024-08-13
err0
errOAAI
errZhu, Xiaolin; Farsh, Tatyanah; Vis, Daniel; Yu, Ivan; Li, Haolong; Liu, Tianyi; Sjostrom, Martin; Shrestha, Raunak; Kneppers, Jeroen; Severson, Tesa; Zhang, Meng; Lundberg, Arian; Rodriguez, Thaidy Moreno; Weinstein, Alana S.; Foye, Adam; Mehra, Niven; Aggarwal, Rahul R.; Bergman, Andries M.; Small, Eric J.; Lack, Nathan A.; Zwart, Wilbert; Quigley, David A.; van der Heijden, Michiel S.; Feng, Felix Y.
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Integrated analyses highlight interactions between the three-dimensional genome and DNA, RNA and epigenomic alterations in metastatic prostate cancer
errNATURE GENETICS
IF31.8
err2024-07-17
err2
errOAAI
errZhao, Shuang G.; Bootsma, Matthew; Zhou, Stanley; Shrestha, Raunak; Moreno-Rodriguez, Thaidy; Lundberg, Arian; Pan, Chu; Arlidge, Christopher; Hawley, James R.; Foye, Adam; Weinstein, Alana S.; Sjostrom, Martin; Zhang, Meng; Li, Haolong; Chesner, Lisa N.; Rydzewski, Nicholas R.; Helzer, Kyle T.; Shi, Yue; Bailey, Adina M.; Zhang, Li; Beer, Tomasz M.; Thomas, George; Chi, Kim N.; Gleave, Martin; Zoubeidi, Amina; Reiter, Robert E.; Rettig, Matthew B.; Witte, Owen; Bose, Rohit; Huang, Franklin W.; Fong, Larry; Lara, Primo N.; Evans, Christopher P.; Huang, Jiaoti; Lynch, Molly; Dehm, Scott M.; Lang, Joshua M.; Alumkal, Joshi J.; He, Hansen H.; Wyatt, Alexander W.; Aggarwal, Rahul; Zwart, Wilbert; Small, Eric J.; Quigley, David A.; Lupien, Mathieu; Feng, Felix Y.
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An Atlas of Accessible Chromatin in Advanced Prostate Cancer Reveals the Epigenetic Evolution during Tumor Progression
errCANCER RESEARCH
IF16.6
err2024-07-11
err4
PREAI
errShrestha, Raunak; Chesner, Lisa N.; Zhang, Meng; Zhou, Stanley; Foye, Adam; Lundberg, Arian; Weinstein, Alana S.; Sjoestroem, Martin; Zhu, Xiaolin; Moreno-Rodriguez, Thaidy; Li, Haolong; Alumkal, Joshi J.; Aggarwal, Rahul; Small, Eric J.; Lupien, Mathieu; Quigley, David A.; Feng, Felix Y.
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Integrative analysis of ultra-deep RNA-seq reveals alternative promoter usage as a mechanism of activating oncogenic programmes during prostate cancer progression
errNATURE CELL BIOLOGY
IF19.1
err2024-06-13
err1
PREAI
errZhang, Meng; Sjostrom, Martin; Cui, Xiekui; Foye, Adam; Farh, Kyle; Shrestha, Raunak; Lundberg, Arian; Dang, Ha X.; Li, Haolong; Febbo, Phillip G.; Aggarwal, Rahul; Alumkal, Joshi J.; Small, Eric J.; Maher, Christopher A.; Feng, Felix Y.; Quigley, David A.
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errSave
An atlas of accessible chromatin in advanced prostate cancer
errCANCER RESEARCH
IF16.6
err2024-04-05
err0
PREAI
errShrestha, Raunak; Chesner, Lisa N.; Zhang, Meng; Zhou, Stanley; Foye, Adam; Lundberg, Arian; Weinstein, Alana S.; Sjostrom, Martin; Zhu, Xiaolin; Moreno-Rodriguez, Thaidy; Li, Haolong; Alumkal, Joshi J.; Aggarwal, Rahul; Small, Eric J.; Lupien, Mathieu; Quigley, David A.; Feng, Felix Y.
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errSave
The Genomic and Epigenomic Landscape of Double-Negative Metastatic Prostate Cancer
errCANCER RESEARCH
IF16.6
err2023-06-08
err17
errOAAI
errLundberg, Arian; Zhang, Meng; Aggarwal, Rahul; Li, Haolong; Zhang, Li; Foye, Adam; Sjostrom, Martin; Chou, Jonathan; Chang, Kevin; Moreno-Rodriguez, Thaidy; Shrestha, Raunak; Baskin, Avi; Zhu, Xiaolin; Weinstein, Alana S.; Younger, Noah; Alumkal, Joshi J.; Beer, Tomasz M.; Chi, Kim N.; Evans, Christopher P.; Gleave, Martin; Lara, Primo N.; Reiter, Rob E.; Retting, Matthew B.; Witte, Owen N.; Wyatt, Alexander W.; Feng, Felix Y.; Small, Eric J.; Quigley, David A.
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errSave
Convergent evolution in DNA repair-deficient mCRPC in response to targeted therapy
errCANCER RESEARCH
IF16.6
err2023-06-02
err0
PREAI
errMoreno, Thaidy; Zhang, Meng; Lundberg, Arian; Shrestha, Raunak; Sjostrom, Martin; Pasam, Anu; Foye, Adam; Trigos, Anna; Feng, Felix; Sandhu, Shahneen; Quigley, David A.
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Genomic and epigenomic drivers of double-negative metastatic prostate cancer
errCANCER RESEARCH
IF16.6
err2023-06-02
err0
PREAI
errLundberg, Arian; Zhang, Meng; Aggarwal, Rahul R.; Li, Haolong; Zhang, Li; Foye, Adam; Sjostrom, Martin; Chou, Jonathan; Chang, Kevin; Moreno-Rodriguez, Thaidy; Shrestha, Raunak; Baskin, Avi; Zhu, Xiaolin; Weinstein, Alana S.; Younger, Noah; Alumkal, Joshi J.; Beer, Tomasz M.; Chi, Kim N.; Evans, Christopher P.; Gleave, Martin; Lara, Primo N.; Reiter, Robert E.; Rettig, Matthew B.; Witte, Owen N.; Wyatt, Alexander W.; Feng, Felix Y.; Small, Eric J.; Quigley, David A.
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errSave
Alternative promoter usage is linked to transcriptional and epigenetic alterations during prostate cancer progression
errCANCER RESEARCH
IF16.6
err2023-06-02
err0
PREAI
errZhang, Meng; Sjostrom, Martin; Shrestha, Raunak; Lundberg, Arian; Moreno-Rodriguez, Thaidy; Foye, Adam; Dang, Ha X.; Alumkal, Joshi J.; Aggarwal, Rahul; Small, Eric J.; Maher, Christopher A.; Feng, Felix Y.; Quigley, David
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errSave
Whole genome and transcriptome analysis of paired metastatic biopsies identified resistance mechanisms in castration-resistant prostate cancer
errCANCER RESEARCH
IF16.6
err2023-06-02
err0
PREAI
errZhu, Xiaolin; Vis, Daniel; Sjostrom, Martin; Shrestha, Raunak; Kneppers, Jeroen; Severson, Tesa; Zhu, Yanyun; Zhang, Meng; Lundberg, Arian; Rodriguez, Thaidy Moreno; Weinstein, Alana; Li, Haolong; Foye, Adam; Aggarwal, Rahul; Bergman, Andries M.; Small, Eric; Zwart, Wilbert; Quigley, David; van der Heijden, Michiel; Feng, Felix
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errSave
Genome-wide CRISPR screens identify PTGES3 as a druggable AR modulator
errCANCER RESEARCH
IF16.6
err2023-06-02
err0
PREAI
errLi, Haolong; Melnyk, James E.; Fu, Becky Xu Hua; Feng, Siyu; Sjostrom, Martin; Shrestha, Raunak; Zhang, Meng; Chesner, Lisa N.; Shin, Hyun Jin; Calvert, Marsha; Chou, Jonathan; Das, Rajdeep; Egusa, Emily A.; Winters, Aidan; Zhu, Jun; Maheshwari, Ashutosh; Hua, Junjie T.; Alshalalfa, Mohammed; Chen, William S.; Stohr, Bradley A.; Siddiqui, Javed; Huang, Bo; Small, Eric J.; Quigley, David A.; Shokat, Kevan M.; Gilbert, Luke A.; Feng, Felix Y.
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errSave
Beyond Reconstruction: What Leads to Satisfaction in Post-Disaster Recovery?
errJOURNAL OF HAPPINESS STUDIES
IF3.3
err2023-03-18
err1
PREAI
errShrestha, Ratna K. K.; Shrestha, Raunak; Shneiderman, Sara; Baniya, Jeevan
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errSave
Pathway and network analysis of more than 2500 whole cancer genomes (vol 11, 729, 2020)
errNATURE COMMUNICATIONS
IF15.7
err2022-12-08
err0
errOAAI
errReyna, Matthew A.; Haan, David; Paczkowska, Marta; Verbeke, Lieven P. C.; Vazquez, Miguel; Kahraman, Abdullah; Pulido-Tamayo, Sergio; Barenboim, Jonathan; Wadi, Lina; Dhingra, Priyanka; Shrestha, Raunak; Getz, Gad; Lawrence, Michael S.; Pedersen, Jakob Skou; Rubin, Mark A.; Wheeler, David A.; Brunak, Sren; Izarzugaza, Jose M. G.; Khurana, Ekta; Marchal, Kathleen; von Mering, Christian; Sahinalp, S. Cenk; Valencia, Alfonso; Reimand, Jueri; Stuart, Joshua M.; Raphael, Benjamin J.
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The 5-Hydroxymethylcytosine Landscape of Prostate Cancer
errCANCER RESEARCH
IF16.6
err2022-10-17
err33
errOAAI
errSjostrom, Martin; Zhao, Shuang G.; Levy, Samuel; Zhang, Meng; Ning, Yuhong; Shrestha, Raunak; Lundberg, Arian; Herberts, Cameron; Foye, Adam; Aggarwal, Rahul; Hua, Junjie T.; Li, Haolong; Bergamaschi, Anna; Maurice-Dror, Corinne; Maheshwari, Ashutosh; Chen, Sujun; Ng, Sarah W. S.; Ye, Wenbin; Petricca, Jessica; Fraser, Michael; Chesner, Lisa; Perry, Marc D.; Moreno-Rodriguez, Thaidy; Chen, William S.; Alumkal, Joshi J.; Chou, Jonathan; Morgans, Alicia K.; Beer, Tomasz M.; Thomas, George, V; Gleave, Martin; Lloyd, Paul; Phillips, Tierney; McCarthy, Erin; Haffner, Michael C.; Zoubeidi, Amina; Annala, Matti; Reiter, Robert E.; Rettig, Matthew B.; Witte, Owen N.; Fong, Lawrence; Bose, Rohit; Huang, Franklin W.; Luo, Jianhua; Bjartell, Anders; Lang, Joshua M.; Mahajan, Nupam P.; Lara, Primo N.; Evans, Christopher P.; Tran, Phuoc T.; Posadas, Edwin M.; He, Chuan; Cui, Xiao-Long; Huang, Jiaoti; Zwart, Wilbert; Gilbert, Luke A.; Maher, Christopher A.; Boutros, Paul C.; Chi, Kim N.; Ashworth, Alan; Small, Eric J.; He, Housheng H.; Wyatt, Alexander W.; Quigley, David A.; Feng, Felix Y.
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errSave
An integrated functional and clinical genomics approach reveals genes driving aggressive metastatic prostate cancer
errNATURE COMMUNICATIONS
IF15.7
err2021-07-29
err22
errOAAI
errDas, Rajdeep; Sjostrom, Martin; Shrestha, Raunak; Yogodzinski, Christopher; Egusa, Emily A.; Chesner, Lisa N.; Chen, William S.; Chou, Jonathan; Dang, Donna K.; Swinderman, Jason T.; Ge, Alex; Hua, Junjie T.; Kabir, Shaheen; Quigley, David A.; Small, Eric J.; Ashworth, Alan; Feng, Felix Y.; Gilbert, Luke A.
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Multiomics Characterization of Low-Grade Serous Ovarian Carcinoma Identifies Potential Biomarkers of MEK Inhibitor Sensitivity and Therapeutic Vulnerability
errCANCER RESEARCH
IF16.6
err2021-01-13
err29
errOAAI
errShrestha, Raunak; Fernandez, Marta Llaurado; Dawson, Amy; Hoenisch, Joshua; Volik, Stanislav; Lin, Yen-Yi; Anderson, Shawn; Kim, Hannah; Haegert, Anne M.; Colborne, Shane; Wong, Nelson K. Y.; McConeghy, Brian; Bell, Robert H.; Brahmbhatt, Sonal; Lee, Cheng-Han; DiMattia, Gabriel E.; Le Bihan, Stephane; Morin, Gregg B.; Collins, Colin C.; Carey, Mark S.
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Research Directions

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