Patrick J. Willems - Publications, H-index & Citations

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Patrick J. Willems

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68H-index

292Paper Count

1.6WCitation Count

Published Papers 81

Publication Date

A platform for high-throughput and ultrasensitive immunopeptidomics

MOLECULAR & CELLULAR PROTEOMICS

IF5.5

2026-05-18

OAAI

Adillah Gul; Laura Van Moortel; Patrick Willems; Ilke Aernout; Laura Pedró-Cos; Kia C. Ferrell; Katie Boucher; An Staes; Simon Devos; Ine Lentacker; Bart Vandekerckhove; Caroline Demangel; Fabien Thery; Francis Impens

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Data-Independent Immunopeptidomics Discovery of Low-Abundant Bacterial Epitopes

Journal of Proteome Research

IF3.6

2025-10-30

OAAI

Patrick Willems; An Staes; Laia Miret-Casals; Vadim Demichev; Simon Devos; Francis Impens

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Challenges and opportunities in mRNA vaccine development against bacteria

Nature Microbiology

IF19.4

2025-07-29

PREAI

Ilke Aernout; Rein Verbeke; Fabien Thery; Patrick Willems; Uri Elia; Stefaan C. De Smedt; Rino Rappuoli; Dan Peer; Francis Impens; Ine Lentacker

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Maximizing Immunopeptidomics-Based Bacterial Epitope Discovery by Multiple Search Engines and Rescoring

JOURNAL OF PROTEOME RESEARCH

IF3.6

2025-03-01

OAAI

Willems, Patrick; Thery, Fabien; Van Moortel, Laura; De Meyer, Margaux; Staes, An; Gul, Adillah; Kovalchuke, Lyudmila; Declercq, Arthur; Devreese, Robbe; Bouwmeester, Robbin; Gabriels, Ralf; Martens, Lennart; Impens, Francis

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TermineR: Extracting information on endogenous proteolytic processing from shotgun proteomics data

PROTEOMICS

IF3.9

2024-08-10

OAAI

Cosenza-Contreras, Miguel; Seredynska, Adrianna; Vogele, Daniel; Pinter, Niko; Brombacher, Eva; Cueto, Ruth Fiestas; Dinh, Thien-Ly Julia; Bernhard, Patrick; Rogg, Manuel; Liu, Junwei; Willems, Patrick; Stael, Simon; Huesgen, Pitter F.; Kuehn, E. Wolfgang; Kreutz, Clemens; Schell, Christoph; Schilling, Oliver

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CysQuant: Simultaneous quantification of cysteine oxidation and protein abundance using data dependent or independent acquisition mass spectrometry

REDOX BIOLOGY

IF11.9

2023-11-01

OAAI

Huang, Jingjing; Staes, An; Impens, Francis; Demichev, Vadim; Van Breusegem, Frank; Gevaert, Kris; Willems, Patrick

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Shift in vacuolar to cytosolic regime of infecting Salmonella from a dual proteome perspective

PLOS PATHOGENS

IF4.9

2023-08-03

OAAI

Fels, Ursula; Willems, Patrick; De Meyer, Margaux; Gevaert, Kris; Van Damme, Petra

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Mutation of Arabidopsis SME1 and Sm core assembly improves oxidative stress resilience

FREE RADICAL BIOLOGY AND MEDICINE

IF8.2

2023-05-01

OAAI

Willems, Patrick; Van Ruyskensvelde, Valerie; Maruta, Takanori; Pottie, Robin; Fernandez-Fernandez, Alvaro D.; Pauwels, Jarne; Hannah, Matthew A.; Gevaert, Kris; Van Breusegem, Frank; Van der Kelen, Katrien

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Cysteine thiol-based post-translational modification: What do we know about transcription factors?

TRENDS IN PLANT SCIENCE

IF20.8

2023-04-01

OAAI

Zhou, Heng; Huang, Jingjing; Willems, Patrick; Van Breusegem, Frank; Xie, Yanjie

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Functionally annotating cysteine disulfides and metal binding sites in the plant kingdom using AlphaFold2 predicted structures

FREE RADICAL BIOLOGY AND MEDICINE

IF8.2

2023-01-01

OAAI

Willems, Patrick; Huang, Jingjing; Messens, Joris; Van Breusegem, Frank

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Editorial: Plant protein termini: Their generation, modification and function

FRONTIERS IN PLANT SCIENCE

IF4.8

2022-09-30

OAAI

Willems, Patrick; Huesgen, Pitter F.; Finkemeier, Iris; Graciet, Emmanuelle; Meinnel, Thierry; Van Breusegem, Frank

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To New Beginnings: Riboproteogenomics Discovery of N-Terminal Proteoforms in Arabidopsis Thaliana

FRONTIERS IN PLANT SCIENCE

IF4.8

2022-01-06

OAAI

Willems, Patrick; Ndah, Elvis; Jonckheere, Veronique; Van Breusegem, Frank; Van Damme, Petra

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The Arabidopsis mediator complex subunit 8 regulates oxidative stress responses

PLANT CELL

IF11.6

2021-03-13

OAAI

He, Huaming; Denecker, Jordi; Van der Kelen, Katrien; Willems, Patrick; Pottie, Robin; Phua, Su Yin; Hannah, Matthew A.; Vertommen, Didier; Van Breusegem, Frank; Mhamdi, Amna

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Phototropin 1 and 2 Influence Photosynthesis, UV-C Induced Photooxidative Stress Responses, and Cell Death

CELLS

IF5.2

2021-01-20

OAAI

Rusaczonek, Anna; Czarnocka, Weronika; Willems, Patrick; Sujkowska-Rybkowska, Marzena; Van Breusegem, Frank; Karpinski, Stanislaw

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Use of Hybrid Data-Dependent and -Independent Acquisition Spectral Libraries Empowers Dual-Proteome Profiling

JOURNAL OF PROTEOME RESEARCH

IF3.6

2021-01-19

OAAI

Willems, Patrick; Fels, Ursula; Staes, An; Gevaert, Kris; Van Damme, Petra

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Contemporary proteomic strategies for cysteine redoxome profiling

PLANT PHYSIOLOGY

IF6.9

2020-12-18

OAAI

Willems, Patrick; Van Breusegem, Frank; Huang, Jingjing

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Lost and Found: Re-searching and Re-scoring Proteomics Data Aids Genome Annotation and Improves Proteome Coverage

MSYSTEMS

IF4.6

2020-10-27

OAAI

Willems, Patrick; Fijalkowski, Igor; Van Damme, Petra

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Chemical Genetics Approach Identifies Abnormal Inflorescence Meristem 1 as a Putative Target of a Novel Sulfonamide That Protects Catalase2-Deficient Arabidopsis against Photorespiratory Stress

CELLS

IF5.2

2020-09-02

OAAI

van der Meer, Tom; Verlee, Arno; Willems, Patrick; Impens, Francis; Gevaert, Kris; Testerink, Christa; Stevens, Christian V.; Van Breusegem, Frank; Kerchev, Pavel

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Novel Role of JAC1 in Influencing Photosynthesis, Stomatal Conductance, and Photooxidative Stress Signalling Pathway inArabidopsis thaliana

FRONTIERS IN PLANT SCIENCE

IF4.8

2020-07-29

OAAI

Czarnocka, Weronika; Rusaczonek, Anna; Willems, Patrick; Sujkowska-Rybkowska, Marzena; Van Breusegem, Frank; Karpinski, Stanislaw

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Identification of Sulfenylated Cysteines inArabidopsis thalianaProteins Using a Disulfide-Linked Peptide Reporter

FRONTIERS IN PLANT SCIENCE

IF4.8

2020-07-02

OAAI

Wei, Bo; Willems, Patrick; Huang, Jingjing; Tian, Caiping; Yang, Jing; Messens, Joris; Van Breusegem, Frank

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Research Directions