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Nanoparticles may influence mast cells gene expression profiles without affecting their degranulation function Newton, Hannah S.; Cedrone, Edward; Grunberger, Jason; Xie, Shaojun; Zhao, Yongmei; Tran, Bao; Toms, Bradley S.; Xu, Weining; Plant-Hately, Alexander; Liptrott, Neill J. Share Save
Severus detects somatic structural variation and complex rearrangements in cancer genomes using long-read sequencing Keskus, Ayse G.; Bryant, Asher; Ahmad, Tanveer; Yoo, Byunggil; Aganezov, Sergey; Goretsky, Anton; Donmez, Ataberk; Lansdon, Lisa A.; Rodriguez, Isabel; Park, Jimin; Liu, Yuelin; Cui, Xiwen; Gardner, Joshua; McNulty, Brandy; Sacco, Samuel; Shetty, Jyoti; Zhao, Yongmei; Tran, Bao; Narzisi, Giuseppe; Helland, Adrienne; Cook, Daniel E.; Chang, Pi-Chuan; Kolesnikov, Alexey; Carroll, Andrew; Molloy, Erin K.; Bi, Chengpeng; Walter, Adam; Gibson, Margaret; Pushel, Irina; Guest, Erin; Pastinen, Tomi; Shafin, Kishwar; Miga, Karen H.; Malikic, Salem; Day, Chi-Ping; Robine, Nicolas; Sahinalp, Cenk; Dean, Michael; Farooqi, Midhat S.; Paten, Benedict; Kolmogorov, Mikhail Share Save
Single-cell transcriptional analysis of murine norovirus infection in a human intestinal cell line Matsushima, Yuki; Levenson, Eric A.; Chaimongkol, Natthawan; Harris, Loyall; Zhao, Yongmei; Turan, Sevilay; Otaizo-Carrasquero, Francisco; Ganesan, Sundar; Hornick, Katherine M.; Martens, Craig; Sosnovtsev, Stanislav V.; Green, Kim Y. Share Save
Molecular mechanisms of intron retention in Long Non-Coding RNAs Grammatikakis, Ioannis; Behera, Amit; Hartford, Corrine Corrina R.; Pehrsson, Erica C.; Li, XiaoLing; Zhao, Yongmei; Shrethsa, Biraj; Brownmiller, Tayvia; Caplen, Natasha J.; Prasanth, Kannanganattu V.; Gonatopoulos-Pournatzis, Thomas; Lal, Ashish Share Save
Toward a CRISPR- based mouse model of Vhl- deficient clear cell kidney cancer: Initial experience and lessons learned Stransky, Laura A.; Gao, Wenhua; Schmidt, Laura S.; Bi, Kevin; Ricketts, Christopher J.; Ramesh, Vijyendra; James, Amy; Difilippantonio, Simone; Ileva, Lilia; Kalen, Joseph D.; Karim, Baktiar; Jeon, Albert; Morgan, Tamara; Warner, Andrew C.; Turan, Sevilay; Unite, Joanne; Tran, Bao; Choudhari, Sulbha; Zhao, Yongmei; Linn, Douglas E.; Yun, Changhong; Dhandapani, Sripriya; Parab, Vaishali; Pinheiro, Elaine M.; Morris, Nicole; He, Lixia; Vigeant, Sean M.; Pignon, Jean- Christophe; Ivins, Maura Sticco --; Signoretti, Sabina; Allen, Eliezer M. Van; Linehan, W. Marston; Kaelin, William G. Share Save
NAD deficiency contributes to progressive kidney disease in HIV-nephropathy mice Yoshida, Teruhiko; Myakala, Komuraiah; Jones, Bryce A.; Wang, Xiaoxin X.; Shrivastav, Shashi; Santo, Briana A.; Patel, Tatsat R.; Zhao, Yongmei; Tutino, Vincent M.; Sarder, Pinaki; Rosenberg, Avi Z.; Winkler, Cheryl A.; Levi, Moshe; Kopp, Jeffrey B. Share Save
Evaluation of somatic copy number variation detection by NGS technologies and bioinformatics tools on a hyper-diploid cancer genome Masood, Daniall; Ren, Luyao; Nguyen, Cu; Brundu, Francesco G.; Zheng, Lily; Zhao, Yongmei; Jaeger, Erich; Li, Yong; Cha, Seong Won; Halpern, Aaron; Truong, Sean; Virata, Michael; Yan, Chunhua; Chen, Qingrong; Pang, Andy; Alberto, Reyes; Xiao, Chunlin; Yang, Zhaowei; Chen, Wanqiu; Wang, Charles; Cross Jr, Frank; Catreux, Severine; Shi, Leming; Beaver, Julia A.; Xiao, Wenming; Meerzaman, Daoud M. Share Save
Oral fungal infection tweaks the innate immune tumor microenvironment promoting Li, Xin; Song, Na-Young; Singh, Amit Kumar; Badger, Jonathan; Jiang, Chengfei; Zhu, Feng; Tross, Debra; Zhao, Yongmei; Tran, Bao; Hu, Yinling Share Save
hRpn13 shapes the proteome and transcriptome through epigenetic factors HDAC8, PADI4, and transcription factor NF-KB p50 Osei-Amponsa, Vasty; Chandravanshi, Monika; Lu, Xiuxiu; Magidson, Valentin; Das, Sudipto; Andresson, Thorkell; Dyba, Marzena; Sabbasani, Venkata R.; Swenson, Rolf E.; Fromont, Caroline; Shrestha, Biraj; Zhao, Yongmei; Clapp, Michelle E.; Chari, Raj; Walters, Kylie J. Share Save
Mismatch repair protein MLH1 suppresses replicative stress in BRCA2-deficient breast tumors Sengodan, Satheesh K.; Hu, Xiaoju; Peddibhotla, Vaishnavi; Balamurugan, Kuppusamy; Mitrophanov, Alexander Y.; McKennett, Lois; Kharat, Suhas S.; Sanawar, Rahul; Singh, Vinod Kumar; Albaugh, Mary E.; Burkett, Sandra S.; Zhao, Yongmei; Tran, Bao; Malys, Tyler; Sterneck, Esta; De, Subhajyoti; Sharan, Shyam K. Share Save
Pan-viral serology uncovers distinct virome patterns as risk predictors of hepatocellular carcinoma and intrahepatic cholangiocarcinoma Do, Whitney L.; Wang, Limin; Forgues, Marshonna; Liu, Jinping; Rabibhadana, Siritida; Pupacdi, Benjarath; Zhao, Yongmei; Gholian, Heelah; Bhudhisawasdi, Vajarabhongsa; Pairojkul, Chawalit; Sukeepaisarnjaroen, Wattana; Pugkhem, Ake; Luvira, Vor; Lertprasertsuke, Nirush; Chotirosniramit, Anon; Auewarakul, Chirayu U.; Ungtrakul, Teerapat; Sricharunrat, Thaniya; Sangrajrang, Suleeporn; Phornphutkul, Kannika; Budhu, Anuradha; Harris, Curtis C.; Mahidol, Chulabhorn; Ruchirawat, Mathuros; Wang, Xin Wei Share Save
Tumor biology and immune infiltration define primary liver cancer subsets linked to overall survival after immunotherapy Budhu, Anuradha; Pehrsson, Erica C.; He, Aiwu; Goyal, Lipika; Kelley, Robin Kate; Dang, Hien; Xie, Changqing; Monge, Cecilia; Tandon, Mayank; Ma, Lichun; Revsine, Mahler; Kuhlman, Laura; Zhang, Karen; Baiev, Islam; Lamm, Ryan; Patel, Keyur; Kleiner, David E.; Hewitt, Stephen M.; Tran, Bao; Shetty, Jyoti; Wu, Xiaolin; Zhao, Yongmei; Shen, Tsai-Wei; Choudhari, Sulbha; Kriga, Yuliya; Ylaya, Kris; Warner, Andrew C.; Edmondson, Elijah F.; Forgues, Marshonna; Greten, Tim F.; Wang, Xin Wei Share Save
Context-Dependent Function of Long Noncoding RNA PURPL i n Transcriptome Regulation during p53 Activation Hartford, Corrine Corrina R.; Shrestha, Roshan L.; Pongor, Lorinc; Zhao, Yongmei; Chen, Xiongfong; Fromont, Caroline; Chaudhary, Ritu; Li, Xiao Ling; Pasterczyk, Katherine R.; Kumar, Ravi; Muys, Bruna R.; Tsitsipatis, Dimitrios; Chari, Raj; Gorospe, Myriam; Aladjem, Mirit, I; Khan, Javed; Basrai, Munira A.; Grammatikakis, loannis; Lal, Ashish Share Save
Extrachromosomal DNA Amplification Contributes to Small Cell Lung Cancer Heterogeneity and Is Associated with Worse Outcomes Pongor, Lorinc Sandor; Schultz, Christopher W.; Rinaldi, Lorenzo; Wangsa, Darawalee; Redon, Christophe E.; Takahashi, Nobuyuki; Fialkoff, Gavriel; Desai, Parth; Zhang, Yang; Burkett, Sandra; Hermoni, Nadav; Vilk, Noa; Gutin, Jenia; Gergely, Rona; Zhao, Yongmei; Nichols, Samantha; Vilimas, Rasa; Sciuto, Linda; Graham, Chante; Caravaca, Juan Manuel; Turan, Sevilay; Shen, Tsai-wei; Rajapakse, Vinodh N.; Kumar, Rajesh; Upadhyay, Deep; Kumar, Suresh; Kim, Yoo Sun; Roper, Nitin; Tran, Bao; Hewitt, Stephen M.; Kleiner, David E.; Aladjem, Mirit I.; Friedman, Nir; Hager, Gordon L.; Pommier, Yves; Ried, Thomas; Thomas, Anish Share Save
Expression of LIM domain-binding 3 (LDB3), a striated muscle Z-band alternatively spliced PDZ-motif protein in the nervous system Blech-Hermoni, Yotam; Subedi, Kalpana; Silver, Maya; Jensen, Leah; Coscia, Stephen; Kates, Malcolm M.; Zhao, Yongmei; Raley, Castle; Edwards, Nancy; Tran, Bao; Ray-Chaudhary, Abhik; Pathak, Pankaj; Mankodi, Ami Share Save
Structural variant analysis of a cancer reference cell line sample using multiple sequencing technologies Talsania, Keyur; Shen, Tsai-wei; Chen, Xiongfong; Jaeger, Erich; Li, Zhipan; Chen, Zhong; Chen, Wanqiu; Tran, Bao; Kusko, Rebecca; Wang, Limin; Pang, Andy Wing Chun; Yang, Zhaowei; Choudhari, Sulbha; Colgan, Michael; Fang, Li Tai; Carroll, Andrew; Shetty, Jyoti; Kriga, Yuliya; German, Oksana; Smirnova, Tatyana; Liu, Tiantain; Li, Jing; Kellman, Ben; Hong, Karl; Hastie, Alex R. R.; Natarajan, Aparna; Moshrefi, Ali; Granat, Anastasiya; Truong, Tiffany; Bombardi, Robin; Mankinen, Veronnica; Meerzaman, Daoud; Mason, Christopher E. E.; Collins, Jack; Stahlberg, Eric; Xiao, Chunlin; Wang, Charles; Xiao, Wenming; Zhao, Yongmei Share Save
LINC00589-dominated ceRNA networks regulate multiple chemoresistance and cancer stem cell-like properties in HER2+ breast cancer Bai, Wendong; Peng, Hongyan; Zhang, Jiarui; Zhao, Yongmei; Li, Zhijun; Feng, Xuelian; Zhang, Jiang; Liang, Fei; Wang, Li; Zhang, Nan; Li, Yize; Zhu, Huayu; Ji, Qiuhe Share Save
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