Naveed Ishaque - Publications, H-index & Citations

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Naveed Ishaque

center of digital

41H-index

192Paper Count

8.0KCitation Count

Published Papers 57

Publication Date

Beyond benchmarking: an expert-guided consensus approach to spatially aware clustering

Nature Methods

IF32.1

2026-08-24

OAAI

Jieran Sun; Kirti Biharie; Peiying Cai; Niklas Müller-Bötticher; Paul Kiessling; Meghan A. Turner; Søren Helweg Dam; Florian Heyl; Sarusan Kathirchelvan; Martin Emons; Samuel Gunz; Sven Twardziok; Amin El-Heliebi; Martin Zacharias; Roland Eils; Marcel Reinders; Raphael Gottardo; Christoph Kuppe; Brian Long; Ahmed Mahfouz; Mark D. Robinson; Naveed Ishaque

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Aberrant brain-type neuronal programs in large-cell pancreatic neuroendocrine carcinoma

Communications Biology

IF5.1

2026-07-30

OAAI

Olivia Debnath; Hilmar Berger; Katharina Detjen; Philipp Kirchner; Ilaria Marinoni; Ines Eichhorn; Felix Bolduan; Thomas Conrad; David Horst; Roland Eils; Bertram Wiedenmann; Aurel Perren; Naveed Ishaque

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Author Correction: Injured epithelial cell states impact kidney allograft survival after T-cell-mediated rejection

Nature Communications

IF15.7

2026-05-11

OAAI

Anna Maria Pfefferkorn; Lorenz Jahn; Patrick T. Gauthier; Vera Anna Kulow; Johannes Roeles; Niklas Müller-Bötticher; Louisa M. S. Gerhardt; Janna Leiz; Sadia Sarfraz; Izabela Plumbom; Robert Greite; Svjetlana Lovric; Jaba Gamrekelashvili; Florian Limbourg; Jessica Schmitz; Jan Hinrich Bräsen; Irina Scheffner; Igor M. Sauer; Felix Aigner; Janine Altmüller; Thomas Conrad; Wilfried Gwinner; Naveed Ishaque; Michael Fähling; Kai M. Schmidt-Ott; Philip F. Halloran; Muhammad Imtiaz Ashraf; Christian Hinze

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Identifying 3D signal overlaps in spatial transcriptomics data with ovrlpy

Nature Biotechnology

IF41.7

2026-02-10

PREAI

Sebastian Tiesmeyer; Niklas Müller-Bötticher; Alexander Malt; Leyao Ma; Sergio Marco-Salas; Paul Kiessling; Paul Horn; Adrien Guillot; Louis B. Kuemmerle; Frank Tacke; Fabian J. Theis; Christoph Kuppe; Mats Nilsson; Roland Eils; Brian Long; Naveed Ishaque

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Injured epithelial cell states impact kidney allograft survival after T-cell-mediated rejection

Nature Communications

IF15.7

2026-01-28

OAAI

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Clonal Hematopoiesis and Lymphoma-Associated Mutations in Hematopoietic Progenitors in B-Cell Non-Hodgkin Lymphoma

Blood

IF23.1

2026-01-07

PREAI

Laura Wiegand; Patricia Silva; Daniel Noerenberg; Friederike Christen; Klara Kopp; Benjamin Nick Locher; Pelle Löwe; Marlon Tilgner; Robert Altwasser; Vanessa Storzer; Catarina Marlene Stein; Franziska Briest; Christopher Maximilian Arends; Mareike Frick; Jana Ihlow; Anna Dolnik; Naveed Ishaque; Ulrich Keller; Il-Kang Na; Livius Penter

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Atopic Dermatitis (AD) Related Cord Blood DNA Methylation Patterns Are Linked to Maternal AD

Allergy

IF12

2025-11-04

OAAI

Laura Matzner; Johanna Denkena; Marey Messingschlager; Anke Seegebarth; Rosa Engelhardt; Zhuoxin Peng; Parastoo Kheiroddin; Sebastian D. Mackowiak; Hermann Brenner; Dietrich Rothenbacher; Naveed Ishaque; Michael Kabesch; Roland Eils; Jon Genuneit; Saskia Trump; Irina Lehmann

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Sainsc: A Computational Tool for Segmentation-Free Analysis of In Situ Capture Data

SMALL METHODS

IF9.1

2024-11-12

OAAI

Mueller-Boetticher, Niklas; Tiesmeyer, Sebastian; Eils, Roland; Ishaque, Naveed

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Exploiting TCF3-Driven Oncogenic Circuits in Burkitt Lymphoma

BLOOD

IF23.1

2024-11-05

PREAI

Loeber, Jens; Serin, Nazli; Ali, Salaheddine; Vockova, Petra; Werth, Marek; Richter, Julia; Kirchner, Marieluise; Sahay, Shashwat; Bohnenberger, Hanibal; Kupcova, Kristyna; Wurm-Kuczera, Rebecca; Chapuy, Claudia; Wienand, Kirsty; Bojarczuk, Kamil; Grewe, Viviane; Guenther, Jenniffer; Ishaque, Naveed; Stroebel, Philipp; Mertins, Philipp; Havranek, Ondrej; Klapper, Wolfram; Keller, Ulrich; Etrych, Tomas; Klener, Pavel; Chapuy, Bjorn

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Testicular large B-cell lymphoma is genetically similar to PCNSL and distinct from nodal DLBCL

HEMASPHERE

IF14.6

2024-10-07

OAAI

Rivas-Delgado, Alfredo; Lopez, Cristina; Clot, Guillem; Nadeu, Ferran; Grau, Marta; Frigola, Gerard; Bosch-Schips, Jan; Radke, Josefine; Ishaque, Naveed; Alcoceba, Miguel; Tapia, Gustavo; Luizaga, Luis; Barcena, Carmen; Kelleher, Nicholas; Villamor, Neus; Baumann, Tycho; Muntanola, Ana; Sancho-Cia, Juan M.; Garcia-Sancho, Alejandro M.; Gonzalez-Barca, Eva; Matutes, Estella; Brito, Jordi A.; Karube, Kennosuke; Salaverria, Itziar; Enjuanes, Anna; Wiemann, Stefan; Heppner, Frank L.; Siebert, Reiner; Climent, Fina; Campo, Elias; Gine, Eva; Lopez-Guillermo, Armando; Bea, Silvia

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Metabolic effects of GDF15 and Activin A on trophoblasts

HYPERTENSION

IF8.2

2024-09-01

PREAI

Hartmann, Sunhild; Zucker, Theresa; Botha, Stefan; Schmidt-Ullrich, Ruth; Secener, Kerim; Stern, Christina; Huppertz, Berthold; Forstner, Desiree; Geisberger, Sabrina; Herse, Florian; Gauster, Martin; Ishaque, Naveed; Mueller, Dominik; Dechend, Ralf; Nonn, Olivia

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Plasticity and lineage commitment of individual TH1 cells are determined by stable T-bet expression quantities

SCIENCE ADVANCES

IF12.5

2024-06-07

OAAI

Hegazy, Ahmed N.; Peine, Caroline; Niesen, Dominik; Panse, Isabel; Vainshtein, Yevhen; Kommer, Christoph; Zhang, Qin; Brunner, Tobias M.; Peine, Michael; Froehlich, Anja; Ishaque, Naveed; Marek, Roman M.; Zhu, Jinfang; Hoefer, Thomas; Loehning, Max

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Immunotherapy drives mesenchymal tumor cell state shift and TME immune response in glioblastoma patients

NEURO-ONCOLOGY

IF13.4

2024-05-02

PREAI

Hendriksen, Josephine D.; Locallo, Alessio; Maarup, Simone; Debnath, Olivia; Ishaque, Naveed; Hasselbach, Benedikte; Skjoth-Rasmussen, Jane; Yde, Christina Westmose; Poulsen, Hans S.; Lassen, Ulrik; Weischenfeldt, Joachim

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USING A MULTI-OMICS LANDSCAPE OF THE MATERNAL-FETAL INTERFACE TO MODEL THE LONGITUDINAL PATHOGENESIS OF EARLY-ONSET PRE-ECLAMPSIA

JOURNAL OF HYPERTENSION

IF4.1

2024-05-01

OAAI

Nonn, Olivia; Debnath, Olivia; Valdes, Daniela; Frolova, Alina; Haider, Sandra; Verlohren, Stefan; Thilaganathan, Basky; Kaituu-lino, Tuuhevaha J.; Tong, Stephen; Staff, Anne Cathrine; Coscia, Fabian; Mueller, Dominik N.; Dechend, Ralf; Gauster, Martin; Ishaque, Naveed; Herse, Florian

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Mutational topography reflects clinical neuroblastoma heterogeneity

CELL GENOMICS

IF9

2023-10-01

OAAI

Rodriguez-Fos, Elias; Planas-Felix, Merce; Burkert, Martin; Puiggros, Montserrat; Toedling, Joern; Thiessen, Nina; Blanc, Eric; Szymansky, Annabell; Hertwig, Falk; Ishaque, Naveed; Beule, Dieter; Torrents, David; Eggert, Angelika; Koche, Richard P.; Schwarz, Roland F.; Haase, Kerstin; Schulte, Johannes H.; Henssen, Anton G.

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Genome-wide DNA methylation sequencing identifies epigenetic perturbations in the upper airways under long-term exposure to moderate levels of ambient air pollution

ENVIRONMENTAL RESEARCH

IF7.7

2023-09-01

OAAI

Messingschlager, Marey; Bartel-Steinbach, Martina; Mackowiak, Sebastian D.; Denkena, Johanna; Bieg, Matthias; Kloes, Matthias; Seegebarth, Anke; Straff, Wolfgang; Suering, Katrin; Ishaque, Naveed; Eils, Roland; Lehmann, Irina; Lermen, Dominik; Trump, Saskia

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Global hypomethylation in childhood asthma identified by genome-wide DNA-methylation sequencing preferentially affects enhancer regions

ALLERGY

IF12

2023-02-10

OAAI

Thuermann, Loreen; Kloes, Matthias; Mackowiak, Sebastian D.; Bieg, Matthias; Bauer, Tobias; Ishaque, Naveed; Messingschlager, Marey; Herrmann, Carl; Roeder, Stefan; Bauer, Mario; Schaeuble, Sascha; Faessler, Erik; Hahn, Udo; Weichenhan, Dieter; Muecke, Oliver; Plass, Christoph; Borte, Michael; von Mutius, Erika; Stangl, Gabriele I.; Lauener, Roger; Karvonen, Anne M.; Divaret-Chauveau, Amandine; Riedler, Josef; Heinrich, Joachim; Standl, Marie; von Berg, Andrea; Schaaf, Beate; Herberth, Gunda; Kabesch, Michael; Eils, Roland; Trump, Saskia; Lehmann, Irina

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Robust methylation-based classification of brain tumours using nanopore sequencing

NEUROPATHOLOGY AND APPLIED NEUROBIOLOGY

IF3.4

2022-11-09

OAAI

Kuschel, Luis P.; Hench, Juergen; Frank, Stephan; Hench, Ivana Bratic; Girard, Elodie; Blanluet, Maud; Masliah-Planchon, Julien; Misch, Martin; Onken, Julia; Czabanka, Marcus; Yuan, Dongsheng; Lukassen, Soeren; Karau, Philipp; Ishaque, Naveed; Hain, Elisabeth G.; Heppner, Frank; Idbaih, Ahmed; Behr, Nikolaus; Harms, Christoph; Capper, David; Euskirchen, Philipp

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5′isomiR-183-5p|+2 elicits tumor suppressor activity in a negative feedback loop with E2F1

JOURNAL OF EXPERIMENTAL & CLINICAL CANCER RESEARCH

IF12.8

2022-06-02

OAAI

Li, Xiaoya; Michels, Birgitta Elisabeth; Tosun, Oyku Ece; Jung, Janine; Kappes, Jolane; Ibing, Susanne; Nataraj, Nishanth Belugali; Sahay, Shashwat; Schneider, Martin; Woerner, Angelika; Becki, Corinna; Ishaque, Naveed; Feuerbach, Lars; Hessling, Bernd; Helm, Dominic; Will, Rainer; Yarden, Yosef; Muller-Decker, Karin; Wiemann, Stefan; Koerner, Cindy

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The genomic and transcriptional landscape of primary central nervous system lymphoma

NATURE COMMUNICATIONS

IF15.7

2022-05-10

OAAI

Radke, Josefine; Ishaque, Naveed; Koll, Randi; Gu, Zuguang; Schumann, Elisa; Sieverling, Lina; Uhrig, Sebastian; Huebschmann, Daniel; Toprak, Umut H.; Lopez, Cristina; Hostench, Xavier Pastor; Borgoni, Simone; Juraeva, Dilafruz; Pritsch, Fabienne; Paramasivam, Nagarajan; Balasubramanian, Gnana Prakash; Schlesner, Matthias; Sahay, Shashwat; Weniger, Marc; Pehl, Debora; Radbruch, Helena; Osterloh, Anja; Korfel, Agnieszka; Misch, Martin; Onken, Julia; Faust, Katharina; Vajkoczy, Peter; Moskopp, Dag; Wang, Yawen; Joedicke, Andreas; Truemper, Lorenz; Anagnostopoulos, Ioannis; Lenze, Dido; Kueppers, Ralf; Hummel, Michael; Schmitt, Clemens A.; Wiestler, Otmar D.; Wolf, Stephan; Unterberg, Andreas; Eils, Roland; Herold-Mende, Christel; Brors, Benedikt; Siebert, Reiner; Wiemann, Stefan; Heppner, Frank L.

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Research Directions