Olivia Swanson - Publications, H-index & Citations

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Olivia Swanson

Scripps Research Institute

6H-index

22Paper Count

160Citation Count

Published Papers 12

Publication Date

A blinded, prospective benchmark of in silico antibody discovery anchored to experimental affinity and developability

Nature Biotechnology

IF41.7

2026-08-19

OAAI

M. Frank Erasmus; Daniel Bedinger; Elizabeth Hopkins; Ginger Ferguson; Justine Strickler; Christilyn P. Graff; Samantha R. Summers; Stacy L. Capehart; Joshua D. Slocum; Crystal Richardson; Sumit Kumar; Zhifei Sun; Yujie Shang; Jixian Zhang; Ming Gu; Lixia Yi; Alon Wellner; Shuangjia Zheng; Wei Lu; Pietro Sormanni; Matthew Greenig; Haiping Zhang; Brendan T. Mann; Mahdi Baghbanzadeh; Ali Rahnavard; Gregory L. Moore; Huaiyu Sun; Ying Ding; Alex Nisthal; Jitendra Kanodia; Matthew J. Bernett; Aurélien Pélissier; Yanjun Shao; Maria Rodriguez Martinez; Karthik Ramesh; Horacio Nastri; Andreas Evers; Anhar Abdelatif; Andrew J. Bordner; Mykola Bordyuh; Lim Heo; Brian A. Kidd; H. Serhat Tetikol; Shuai Wei; Jung-Eun Shin; Ryan Peckner; Leigh Manley; Ajitesh Lunge; Yashas Devasurmutt; Bora Guloglu; Liviu Copoiu; Miles McGibbon; Monica L. Fernandez-Quintero; Nitesh Mishra; Sean M. Callaghan; Olivia M. Swanson; Daniel L. V. Bader; James A. Ferguson; Sai S. R. Raghavan; Benjamin Nemoz; Colleen A. Maillie; Charles Bowman; Bryan Briney; Andrew B. Ward; Paolo Marcatili; Rahmad Akbar; Bing He; Fandi Wu; Jianhua Yao; Bin Hu; Michal Kucer; Kaetlyn Rose Gibson; Rahul Somasundaram; Li-Wei Hung; Tomasz Kaszuba; Daved H. Fremont; Hyeongsun Jeong; Vinodh Babu Kurella; Shipra Malhotra; Satyendra Kumar; Yanyun Liu; Lingling Xu; Joshua Misa; Alexander Nicholas St. John; Jeff Vogt; Fátima A. Dávila-Hernández; Da Xu; Michael Chungyoun; Zyaja D. Huggan; Jeffrey J. Gray; Jonathan Parkinson; Young Su Ko; Wei Wang; Franziska Geiger; Jonathon D. Ziegler; Nikhil Haas; Chance Challacombe; Ahmad Qamar; Akshita Singh; Yi-Ching Tang; Zhiqiang An; Xiaoqian Jiang; Yejin Kim; Xinyan Zhao; Erik Swanson; Jürgen Klattig; Karsten Winkler; Tschimegma Bataa; Volker Sandig; Lilian Denzler; Chunan Liu; Randall J. Brezski; Laura Spector; Katheryn Perea-Schmittle; Sara D’Angelo; Fortunato Ferrara; Andrew R. M. Bradbury

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B cell imprinting in children impairs antibodies to the haemagglutinin stalk

Nature

IF48.5

2026-03-11

OAAI

Jiayi Sun; Gyunghee Jo; Chloe A. Troxell; Yanbin Fu; Robert Hoezl; Huibin Lv; Hassanein H. Abozeid; Qi Wen Teo; Tossapol Pholcharee; Joshua J. C. McGrath; Siriruk Changrob; Sean A. Nelson; Atsuhiro Yasuhara; Min Huang; Nai-Ying Zheng; Jordan C. Chervin; Lei Li; Monica L. Fernández-Quintero; Johannes R. Loeffler; Alesandra J. Rodriguez; Jiachen Huang; Olivia M. Swanson; Angel Balmaseda; Guillermina Kuan; Lora Campredon; E. Kaitlynn Allen; Gabriele Neumann; Nicholas C. Wu; Yoshihiro Kawaoka; Florian Krammer; Asuncion Mejias; Octavio Ramilo; Paul G. Thomas; Aubree Gordon; Andrew B. Ward; Julianna Han; Patrick C. Wilson

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Virus glycoprotein nanodisc platform for vaccine analytics

Nature Communications

IF15.7

2026-02-10

OAAI

Kimmo Rantalainen; Alessia Liguori; Gabriel Ozorowski; Claudia Flynn; Jon M. Steichen; Olivia M. Swanson; Patrick J. Madden; Sabyasachi Baboo; Swastik Phulera; Anant Gharpure; Danny Lu; Oleksandr Kalyuzhniy; Patrick Skog; Sierra Terada; Monolina Shil; Jolene K. Diedrich; Erik Georgeson; Ryan Tingle; Saman Eskandarzadeh; Wen-Hsin Lee; Nushin Alavi; Diana Goodwin; Michael Kubitz; Sonya Amirzehni; Sunny Himansu; Devin Sok; Jeong Hyun Lee; John R. Yates; James C. Paulson; Shane Crotty; Torben Schiffner; Andrew B. Ward; William R. Schief

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Cryo-EM structures of antibodies elicited by germline-targeting HIV MPER epitope scaffolds

Cell Reports

IF6.9

2026-01-12

OAAI

Jiachen Huang; Olivia M. Swanson; Kimmo Rantalainen; Monica L. Fernández-Quintero; Johannes R. Loeffler; Ryan Tingle; Erik Georgeson; Nicole Phelps; Gabriel Ozorowski; Torben Schiffner; William R. Schief; Andrew B. Ward

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Structural basis of broad protection against influenza virus by human antibodies targeting the neuraminidase active site via a recurring motif in CDR H3

Nature Communications

IF15.7

2025-08-01

OAAI

Gyunghee Jo; Seiya Yamayoshi; Krystal M. Ma; Olivia Swanson; Jonathan L. Torres; James A. Ferguson; Monica L. Fernández-Quintero; Jiachen Huang; Jeffrey Copps; Alesandra J. Rodriguez; Jon M. Steichen; Yoshihiro Kawaoka; Julianna Han; Andrew B. Ward

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An engineered immunogen activates diverse HIV broadly neutralizing antibody precursors and promotes acquisition of improbable mutations

SCIENCE TRANSLATIONAL MEDICINE

IF14.6

2025-01-08

PREAI

Swanson, Olivia M.; Zhang, Qianyi E.; Brown, Alecia R.; Smith, Lena M.; Frazier, Mckenzie; Parks, Rob; Bar, Maggie; Jiang, Chuancang; Beem, Joshua S. Martin; Cheng, Hwei-Ling; Davis, Jillian; Mcgovern, Kelly; Newman, Amanda; Edwards, Robert J.; Alam, S. Munir; Saunders, Kevin O.; Alt, Fred; Haynes, Barton F.; Azoitei, Mihai L.

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AIntibody: an experimentally validated in silico antibody discovery design challenge

NATURE BIOTECHNOLOGY

IF41.7

2024-11-04

OAAI

Erasmus, M. Frank; Spector, Laura; Ferrara, Fortunato; Diniro, Roberto; Pohl, Thomas J.; Perea-Schmittle, Katheryn; Wang, Wei; Tessier, Peter M.; Richardson, Crystal; Turner, Laure; Kumar, Sumit; Bedinger, Daniel; Sormanni, Pietro; Fernandez-Quintero, Monica L.; Ward, Andrew B.; Loeffler, Johannes R.; Swanson, Olivia M.; Deane, Charlotte M.; Raybould, Matthew I. J.; Evers, Andreas; Sellmann, Carolin; Bachas, Sharrol; Ruffolo, Jeff; Nastri, Horacio G.; Ramesh, Karthik; Sorensen, Jesper; Croasdale-Wood, Rebecca; Hijano, Oliver; Leal-Lopes, Camila; Shahsavarian, Melody; Qiu, Yu; Marcatili, Paolo; Vernet, Erik; Akbar, Rahmad; Friedensohn, Simon; Wagner, Rick; Kurella, Vinodh babu; Malhotra, Shipra; Kumar, Satyendra; Kidger, Patrick; Almagro, Juan C.; Furfine, Eric; Stanton, Marty; Graff, Christilyn P.; Villalba, Santiago David; Tomszak, Florian; Teixeira, Andre A. R.; Hopkins, Elizabeth; Dovner, Molly; D'Angelo, Sara; Bradbury, Andrew R. M.

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Vaccination induces broadly neutralizing antibody precursors to HIV gp41 (vol 25, pg 1073, 2024)

NATURE IMMUNOLOGY

IF27.6

2024-06-14

OAAI

Schiffner, Torben; Phung, Ivy; Ray, Rashmi; Irimia, Adriana; Tian, Ming; Swanson, Olivia; Lee, Jeong Hyun; Lee, Chang-Chun D.; Marina-Zarate, Ester; Cho, So Yeon; Huang, Jiachen; Ozorowski, Gabriel; Skog, Patrick D.; Serra, Andreia M.; Rantalainen, Kimmo; Allen, Joel D.; Baboo, Sabyasachi; Rodriguez, Oscar L.; Himansu, Sunny; Zhou, Jianfu; Hurtado, Jonathan; Flynn, Claudia T.; McKenney, Katherine; Havenar-Daughton, Colin; Saha, Swati; Shields, Kaitlyn; Schultze, Steven; Smith, Melissa L.; Liang, Chi-Hui; Toy, Laura; Pecetta, Simone; Lin, Ying-Cing; Willis, Jordan R.; Sesterhenn, Fabian; Kulp, Daniel W.; Hu, Xiaozhen; Cottrell, Christopher A.; Zhou, Xiaoya; Ruiz, Jennifer; Wang, Xuesong; Nair, Usha; Kirsch, Kathrin H.; Cheng, Hwei-Ling; Davis, Jillian; Kalyuzhniy, Oleksandr; Liguori, Alessia; Diedrich, Jolene K.; Ngo, Julia T.; Lewis, Vanessa; Phelps, Nicole; Tingle, Ryan D.; Spencer, Skye; Georgeson, Erik; Adachi, Yumiko; Kubitz, Michael; Eskandarzadeh, Saman; Elsliger, Marc A.; Amara, Rama R.; Landais, Elise; Briney, Bryan; Burton, Dennis R.; Carnathan, Diane G.; Silvestri, Guido; Watson, Corey T.; Yates, John R.; Paulson, James C.; Crispin, Max; Grigoryan, Gevorg; Ward, Andrew B.; Sok, Devin; Alt, Frederick W.; Wilson, Ian A.; Batista, Facundo D.; Crotty, Shane; Schief, William R.

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Affinity gaps among B cells in germinal centers drive the selection of MPER precursors

NATURE IMMUNOLOGY

IF27.6

2024-05-30

OAAI

Ray, Rashmi; Schiffner, Torben; Wang, Xuesong; Yan, Yu; Rantalainen, Kimmo; Lee, Chang-Chun David; Parikh, Shivang; Reyes, Raphael A.; Dale, Gordon A.; Lin, Ying-Cing; Pecetta, Simone; Giguere, Sophie; Swanson, Olivia; Kratochvil, Sven; Melzi, Eleonora; Phung, Ivy; Madungwe, Lisa; Kalyuzhniy, Oleksandr; Warner, John; Weldon, Stephanie R.; Tingle, Ryan; Lamperti, Edward; Kirsch, Kathrin H.; Phelps, Nicole; Georgeson, Erik; Adachi, Yumiko; Kubitz, Michael; Nair, Usha; Crotty, Shane; Wilson, Ian A.; Schief, William R.; Batista, Facundo D.

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Vaccination induces broadly neutralizing antibody precursors to HIV gp41

NATURE IMMUNOLOGY

IF27.6

2024-05-30

OAAI

Schiffner, Torben; Phung, Ivy; Ray, Rashmi; Irimia, Adriana; Tian, Ming; Swanson, Olivia; Lee, Jeong Hyun; Lee, Chang-Chun D.; Marina-Zarate, Ester; Cho, So Yeon; Huang, Jiachen; Ozorowski, Gabriel; Skog, Patrick D.; Serra, Andreia M.; Rantalainen, Kimmo; Allen, Joel D.; Baboo, Sabyasachi; Rodriguez, Oscar L.; Himansu, Sunny; Zhou, Jianfu; Hurtado, Jonathan; Flynn, Claudia T.; Mckenney, Katherine; Havenar-Daughton, Colin; Saha, Swati; Shields, Kaitlyn; Schulze, Steven; Smith, Melissa L.; Liang, Chi-Hui; Toy, Laura; Pecetta, Simone; Lin, Ying-Cing; Willis, Jordan R.; Sesterhenn, Fabian; Kulp, Daniel W.; Hu, Xiaozhen; Cottrell, Christopher A.; Zhou, Xiaoya; Ruiz, Jennifer; Wang, Xuesong; Nair, Usha; Kirsch, Kathrin H.; Cheng, Hwei-Ling; Davis, Jillian; Kalyuzhniy, Oleksandr; Liguori, Alessia; Diedrich, Jolene K.; Ngo, Julia T.; Lewis, Vanessa; Phelps, Nicole; Tingle, Ryan D.; Spencer, Skye; Georgeson, Erik; Adachi, Yumiko; Kubitz, Michael; Eskandarzadeh, Saman; Elsliger, Marc A.; Amara, Rama R.; Landais, Elise; Briney, Bryan; Burton, Dennis R.; Carnathan, Diane G.; Silvestri, Guido; Watson, Corey T.; Yates III, John R.; Paulson, James C.; Crispin, Max; Grigoryan, Gevorg; Ward, Andrew B.; Sok, Devin; Alt, Frederick W.; Wilson, Ian A.; Batista, Facundo D.; Crotty, Shane; Schief, William R.

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Mouse and human antibodies bind HLA-E-leader peptide complexes and enhance NK cell cytotoxicity

COMMUNICATIONS BIOLOGY

IF5.1

2022-03-28

OAAI

Li, Dapeng; Brackenridge, Simon; Walters, Lucy C.; Swanson, Olivia; Harlos, Karl; Rozbesky, Daniel; Cain, Derek W.; Wiehe, Kevin; Scearce, Richard M.; Barr, Maggie; Mu, Zekun; Parks, Robert; Quastel, Max; Edwards, Robert J.; Wang, Yunfei; Rountree, Wes; Saunders, Kevin O.; Ferrari, Guido; Borrow, Persephone; Jones, E. Yvonne; Alam, S. Munir; Azoitei, Mihai L.; Gillespie, Geraldine M.; McMichael, Andrew J.; Haynes, Barton F.

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Rapid selection of HIV envelopes that bind to neutralizing antibody B cell lineage members with functional improbable mutations

CELL REPORTS

IF6.9

2021-08-01

OAAI

Swanson, Olivia; Rhodes, Brianna; Wang, Avivah; Xia, Shi-Mao; Parks, Robert; Chen, Haiyan; Sanzone, Aja; Cooper, Melissa; Louder, Mark K.; Lin, Bob C.; Doria-Rose, Nicole A.; Bonsignori, Mattia; Saunders, Kevin O.; Wiehe, Kevin; Haynes, Barton F.; Azoitei, Mihai L.

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Research Directions