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J

John R. Yates

The Scripps Research Institute

188H-index
1.5KPaper Count
14.8WCitation Count
Published Papers 654
Publication Date
Vaccination elicits HIV broadly neutralizing antibodies in primates
errNature
IF48.5
err2026-06-30
err0
PREAI
errJon M. Steichen; Patrick J. Madden; Claudia T. Flynn; Swastik Phulera; Monolina Shil; Oleksandr Kalyuzhniy; Alessia Liguori; Carolyne Kifude; Leigh M. Sewall; Christopher A. Cottrell; Krystal M. Ma; Sabyasachi Baboo; Jolene K. Diedrich; Katherine McKenney; Allan C. deCamp; Diane G. Carnathan; Ivy Phung; Parham Ramezani-Rad; Ester Marina-Zárate; Brian Freeman; Zhenfei Xie; Jeong Hyun Lee; Troy Sincomb; Nicole Phelps; Danny Lu; Diana Goodwin; Ryan Tingle; Yumiko Adachi; Nushin Alavi; Jenny Tran; Andy S. Tran; Alyne Nascimento; Catherine Sovie; Daniel L. V. Bader; Hannah Voic; Xiaoya Zhou; Grace Pixton; Agnes Walsh; Mariane B. Melo; Torben Schiffner; Facundo D. Batista; Dennis R. Burton; Darrell J. Irvine; James C. Paulson; John R. Yates; Gabriel Ozorowski; Andrew B. Ward; Guido Silvestri; Shane Crotty; William R. Schief
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Inhibition of the QPCT–PDIA4 axis rescues ΔF508 and N1303K CFTR in cystic fibrosis
err2026-06-09
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errOAAI
errLe Sun; Larry Rodriguez; Sandra Pankow; Jolene Diedrich; Ke Qin; Jianan Zhang; Xu Wu; Peng Wu; John R. Yates
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Diverse germline-targeting HIV Env immunogens select for distinct mutations in the same knock-in mice B cell receptors
err2026-06-09
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errOAAI
errParul Agrawal; Junli Feng; Latha Kallur Siddaramaiah; Arineh Khechaduri; Kelsey R. Salladay; Karli Hinton; Madison Means; Julianna A. Rose; Luziana Cohen; Ming Tian; Sabyasachi Baboo; Jolene K. Diedrich; Todd Reese; Derin Kara; John R. Yates; James C. Paulson; Frederick W. Alt; Marie Pancera; Leonidas Stamatatos
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Mass Spectrometry Imaging in ACS Journals
err2026-04-28
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errOAAI
errShelley D. Minteer; Jonathan V. Sweedler; Zijian Guo; Jennifer S. Brodbelt; John R. Yates III
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Redox regulation of neuroinflammatory pathways contributes to damage in Alzheimer’s disease brain
err2026-04-23
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PREAI
errLauren N. Carnevale; Piu Banerjee; Xu Zhang; Jazmin Navarro; Charlene K Raspur; Parth Patel; Tomohiro Nakamura; Emily Schahrer; Henry Scott; Nhi Lang; Jolene K. Diedrich; Amanda J. Roberts; John R. Yates; Stuart A. Lipton
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Patch-Clamp Single-Cell Proteomics in Acute Brain Slices: A Framework for Recording; Retrieval; and Interpretation
err2026-03-19
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PREAI
errLarry Rodriguez; Jolene Diedrich; Le Sun; Blake Tsu; Stefanie Kairs; Roman Vlkolinsky; Christopher A. Barnes; Aline M. A. Martins; Marisa Roberto; John R. Yates III
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Structural signature of plasma proteins classifies the status of Alzheimer’s disease
err2026-02-27
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errOAAI
errAhrum Son; Hyunsoo Kim; Jolene K. Diedrich; Casimir Bamberger; Heather M. Wilkins; Jeffrey M. Burns; Jill K. Morris; Robert A. Rissman; Russell H. Swerdlow; John R. Yates
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Virus glycoprotein nanodisc platform for vaccine analytics
err2026-02-10
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errOAAI
errKimmo Rantalainen; Alessia Liguori; Gabriel Ozorowski; Claudia Flynn; Jon M. Steichen; Olivia M. Swanson; Patrick J. Madden; Sabyasachi Baboo; Swastik Phulera; Anant Gharpure; Danny Lu; Oleksandr Kalyuzhniy; Patrick Skog; Sierra Terada; Monolina Shil; Jolene K. Diedrich; Erik Georgeson; Ryan Tingle; Saman Eskandarzadeh; Wen-Hsin Lee; Nushin Alavi; Diana Goodwin; Michael Kubitz; Sonya Amirzehni; Sunny Himansu; Devin Sok; Jeong Hyun Lee; John R. Yates; James C. Paulson; Shane Crotty; Torben Schiffner; Andrew B. Ward; William R. Schief
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Proteomic and biochemical characterization of Bothrops pubescens (Serpentes: Viperidae) venom.
errToxicon
IF2.4
err2025-12-15
err0
PREAI
errPatricia Berasain; Antonio Pinto; André Zelanis; Mikaela Cúparo; Silvana Baletta; Santiago Carreira; Charley Staats; Carlos Termignoni; Jolene K. Diedrich; John Yates III; Victor Morais
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In vivo conformational space and defects of misfolded CFTR variants by covalent protein painting
err2025-11-19
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errOAAI
errSandra Pankow; Tom Casimir Bamberger; Salvador Martínez-Bartolomé; Robin Park; John R. Yates
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TDP-43 skein-like inclusions are formed by BAG3- and HSP70-guided co-aggregation with actin-binding proteins
err2025-10-31
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PREAI
errShan Lu; Sitao Zhang; Spencer Oung; Jolene K. Diedrich; Peng Han; Olatz Arnold-Garcia; Takuya Ohkubo; Olubankole Aladesuyi Arogundade; Sonia Vazquez-Sanchez; Ke Zhang; John Ravits; John R. Yates III; Don W. Cleveland
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Impact of intermittent lead exposure on hominid brain evolution
err2025-10-15
err0
PREAI
errRenaud Joannes-Boyau; Janaina Sena de Souza; Manish Arora; Christine Austin; Kira Westaway; Ian Moffat; Wei Wang; Wei Liao; Yingqi Zhang; Justin W. Adams; Luca Fiorenza; Flora Dérognat; Marie-Helene Moncel; Gary T. Schwartz; Marian Bailey; Filipe F. dos Santos; Gabriela D. A. Guardia; Rafael L. V. Mercuri; Pedro A. F. Galante; Aline M. A. Martins; Blake L. Tsu; Christopher A. Barnes; John Yates; Luiz Pedro Petroski; Sandra M. Sanchez-Sanchez; Jose Oviedo; Roberto H. Herai; Bernardo Lemos; Matthew Tonge; Alysson R. Muotri
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GMP Manufacturing and Characterization of the HIV Booster Immunogen HxB2.WT.Core-C4b for Germline Targeting Vaccine Strategies
err2025-09-29
err0
errOAAI
errSammaiah Pallerla; Latha Kallur Siddaramaiah; Philipp Mundsperger; Dietmar Katinger; Katharina Fauland; Günter Kreismayr; Robert Weik; Onur Arslan; Mingchao Shen; Gabriel Ozorowski; Wen-Hsin Lee; Andrew B. Ward; Sabyasachi Baboo; Jolene K. Diedrich; John R. Yates III; James C. Paulson; Tracy Blumen; Daniel Craig; Ryan Swoyer; Maoli Yuan; Leonidas Stamatatos
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HIV broadly neutralizing antibody precursors to the Apex epitope induced in nonhuman primates
err2025-08-22
err0
PREAI
errKrystal M. Ma; Henry J. Sutton; Payal P. Pratap; Jon M. Steichen; Diane Carnathan; James Quinn; Oleksandr Kalyuzhniy; Alessia Liguori; Sashank Agrawal; Sabyasachi Baboo; Patrick Madden; Christopher A. Cottrell; Jordan R. Willis; Jeong-Hyun Lee; Elise Landais; Xiaozhen Hu; Parham Ramezani-Rad; Gabriel Ozorowski; Vanessa R. Lewis; Jolene K. Diedrich; Xiaoya Zhou; Tasha K. Altheide; Nicole Phelps; Erik Georgeson; Nushin B. Alavi; Danny Lu; Saman Eskandarzadeh; Michael Kubitz; Yumiko Adachi; Tina-Marie Mullen; Murillo Silva; Mariane B. Melo; Sunny Himansu; Darrell J. Irvine; Dennis R. Burton; John R. Yates; James C. Paulson; Devin Sok; Ian A. Wilson; Guido Silvestri; Andrew B. Ward; Shane Crotty; William R. Schief
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Accelerated cGMP production of near-native HIV-1 Env trimers following electroporation transfection and immunogenicity analysis
err2025-08-20
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errOAAI
errShridhar Bale; Elena Gustchina; Javier Guenaga; Victor Ayala; Wen-Hsin Lee; Gabriel Ozorowski; Stephen Whitney; Richard Wilson; Sabyasachi Baboo; Jolene K. Diedrich; Esmeralda D. Doyle; Lauren Hudacik; Elana Ben-Akiva; Kristen A. Rodrigues; Darrell J. Irvine; John R. Yates; James C. Paulson; Andrew B. Ward; Timothy Fouts; Richard T. Wyatt
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Vaccination with an mRNA-encoded membrane-bound HIV envelope trimer induces neutralizing antibodies in animal models
err2025-07-30
err0
errOAAI
errParham Ramezani-Rad; Christopher A. Cottrell; Ester Marina-Zárate; Alessia Liguori; Elise Landais; Jonathan L. Torres; Amber Myers; Jeong Hyun Lee; Sabyasachi Baboo; Claudia Flynn; Katherine McKenney; Eugenia Salcedo; Xiaoya Zhou; Oleksandr Kalyuzhniy; Erik Georgeson; Nicole Phelps; Danny Lu; Saman Eskandarzadeh; Sergey Menis; Michael Kubitz; Bettina Groschel; Nushin Alavi; Abigail M. Jackson; Wen-Hsin Lee; Andy S. Tran; Elana Ben-Akiva; Katarzyna Kaczmarek Michaels; Jolene K. Diedrich; Chiamaka A. Enemuo; Vanessa Lewis; Arpan Pradhan; Sudhir Pai Kasturi; Torben Schiffner; Jon M. Steichen; Diane G. Carnathan; Sunny Himansu; John R. Yates; James C. Paulson; Gabriel Ozorowski; Darrell J. Irvine; Guido Silvestri; Devin Sok; Andrew B. Ward; Shane Crotty; William R. Schief
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Comparative Proteomic Analysis Reveals Altered Ciliary Proteins in Sickle Cell Disease
err2025-05-15
err0
PREAI
errMohieldin, Ashraf M.; Spencer, Madison; Bernal, Carter; Fadol, Wala B.; Gupta, Ankan; Thirugnanam, Karthikeyan; Delahunty, Claire; Nunez, Francisco; Pan, Amy Y.; Brandow, Amanda M.; Palecek, Sean P.; Rarick, Kevin R.; Ramchandran, Ramani; Zennadi, Rahima; Yates III, John
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Vaccination with mRNA-encoded nanoparticles drives early maturation of HIV bnAb precursors in humans
errScience
IF45.8
err2025-05-15
err0
PREAI
errJordan R. Willis; Madhu Prabhakaran; Michelle Muthui; Ansuya Naidoo; Troy Sincomb; Weiwei Wu; Christopher A. Cottrell; Elise Landais; Allan C. deCamp; Nahid R. Keshavarzi; Oleksandr Kalyuzhniy; Jeong Hyun Lee; Linda M. Murungi; Wilfrida A. Ogonda; Nicole L. Yates; Martin M. Corcoran; Swastik Phulera; Joel Musando; Amanda Tsai; Gabrielle Lemire; Yiakon Sein; Michael Muteti; Praveen Alamuri; Jennifer A. Bohl; Drienna Holman; Sunny Himansu; Brett Leav; Caroline Reuter; Li-An Lin; Baoyu Ding; Chunla He; Walter L. Straus; Kellie J. MacPhee; Isabel Regadas; Diana V. Nyabundi; Ruth Chirchir; Omu Anzala; John N. Kimotho; Caleb Kibet; Kelli Greene; Hongmei Gao; Erica Beatman; Kiara Benson; Dominick Laddy; David M. Brown; Rhianna Bronson; Jalen Jean-Baptiste; Suprabhath Gajjala; Zahra Rikhtegaran-Tehrani; Alison Benner; Mukundhan Ramaswami; Danny Lu; Nushin Alavi; Sonya Amirzehni; Michael Kubitz; Ryan Tingle; Erik Georgeson; Nicole Phelps; Yumiko Adachi; Alessia Liguori; Claudia Flynn; Katherine McKenney; Xiaoya Zhou; D. Collins Owuor; Sharon A. Owuor; Soo-Young Kim; Michael Duff; Ju Yeong Kim; Grace Gibson; Sabyasachi Baboo; Jolene Diedrich; Torben Schiffner; Marisa Shields; Mabela Matsoso; Jennifer Santos; Kristen Syvertsen; Allison Kennedy; Melissa Schroeter; Johan Vekemans; John R. Yates; James C. Paulson; Ollivier Hyrien; Adrian B. McDermott; Pholo Maenetje; Julien Nyombayire; Etienne Karita; Rosine Ingabire; Vinodh Edward; Vincent Muturi-Kioi; Janine Maenza; Adrienne E. Shapiro; M. Juliana McElrath; Srilatha Edupuganti; Barbara S. Taylor; David Diemert; Gabriel Ozorowski; Richard A. Koup; David Montefiori; Andrew B. Ward; Gunilla B. Karlsson Hedestam; Georgia Tomaras; Devin J. Hunt; Daniel Muema; Devin Sok; Dagna S. Laufer; Sarah F. Andrews; Eunice W. Nduati; William R. Schief
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Proteomic and Metabolomic Data Transparency
err2025-05-02
err0
PREAI
errYates III, John R.; Eyers, Claire E.; Palmblad, Magnus; Kislinger, Thomas; Holmes, Elaine; Geddes-McAlister, Jennifer; Thakur, Suman S.; Kelly, Ryan T.; Li, Huilin; Voelker, Uwe
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