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Eduardo P. C. Rocha

institut national de la sante et de la recherche medicale (inserm)

95H-index
375Paper Count
3.4WCitation Count
Published Papers 157
Publication Date
Efficient detection and typing of phage-plasmids
errmBio
IF4.7
err2026-02-01
err0
PREAI
errIlchenko, Karina; Bonnin, Remy A.; Rocha, Eduardo P. C.; Pfeifer, Eugen
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Bacteriophages mobilize bacterial defense systems via lateral transduction
err2026-01-23
err0
errOAAI
errXu Kuang; Jamie Gorzynski; Marie Touchon; Andrey Shkoporov; Eduardo P. C. Rocha; J. Ross Fitzgerald; John Chen; Jakob T. Rostøl; José R. Penadés
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Bacterial natural transformation drives cassette shuffling and simplifies recombination in chromosomal integrons
err2025-11-26
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errOAAI
errDebatisse, Kevin; Brunie, Manon; Darracq, Baptiste; Bandini, Elia; Littner, Eloi; Rocha, Eduardo p C.; Mazel, Didier; Loot, Celine
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The extended mobility of plasmids
err2025-08-12
err1
PREAI
errGarcillan-Barcia, Maria Pilar; de la Cruz, Fernando; Rocha, Eduardo P. C.
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Impact of Natural Transformation on the Acquisition of Novel Genes in Bacteria
err2025-08-01
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PREAI
errMazzamurro, Fanny; Touchon, Marie; Charpentier, Xavier; Rocha, Eduardo P. C.
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Antibiotic perturbation of the human gut phageome preserves its individuality and promotes blooms of virulent phages
err2025-07-21
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PREAI
errEugen Pfeifer; Camille d’Humières; Quentin Lamy-Besnier; Florian Plaza Oñate; Remi Denisé; Sara Dion; Bénédicte Condamine; Marie Touchon; Laurence Ma; Charles Burdet; France Mentré; Erick Denamur; Eduardo P.C. Rocha
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Adaptive genomic plasticity in large-genome, broad-host-range vibrio phages
err2025-04-04
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PREAI
errBernard, Charles; Labreuche, Yannick; Diarra, Carine; Daszkowski, Pauline; Cahier, Karine; Goudenege, David; Lamarche, Martin G.; Whitfield, Gregory B.; Lang, Manon; Valencia, Jeffrey; Groseille, Justine; Piel, Damien; Lee, Yan-Jiun; Weigele, Peter; Brun, Yves, V; Rocha, Eduardo P. C.; Le Roux, Frederique
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Genetics, ecology and evolution of phage satellites
err2025-03-27
err0
PREAI
errPenades, Jose R.; Seed, Kimberley D.; Chen, John; Bikard, David; Rocha, Eduardo P. C.
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Effect of sex isolation on the reproduction of pikeperch ( Sander lucioperca L.) submitted to the cycle shift from outdoor to fully controlled conditions
err2025-02-01
err0
PREAI
errLjubobratovic, Uros; Raskovic, Bozidar; Horvath, Akos; Fazekas, Georgina; Markelic, Milica; Ristovic, Tijana; Nagy, Zoltan; Stanivuk, Jelena; Rocha, Eduardo; Burges, Jozsef; Milla, Sylvain
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Belt and braces: Two escape ways to maintain the cassette reservoir of large chromosomal integrons
err2024-04-05
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errOAAI
errRichard, Egill; Darracq, Baptiste; Littner, Eloi; Millot, Gael A.; Conte, Valentin; Cokelaer, Thomas; Engelstadter, Jan; Rocha, Eduardo P. C.; Mazel, Didier; Loot, Celine
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Perturbation and resilience of the gut microbiome up to 3 months after β-lactams exposure in healthy volunteers suggest an important role of microbial β-lactamases
err2024-03-12
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errOAAI
errd'Humieres, Camille; Delavy, Margot; Alla, Laurie; Ichou, Farid; Gauliard, Emilie; Ghozlane, Amine; Levenez, Florence; Galleron, Nathalie; Quinquis, Benoit; Pons, Nicolas; Mullaert, Jimmy; Bridier-Nahmias, Antoine; Condamine, Benedicte; Touchon, Marie; Rainteau, Dominique; Lamaziere, Antonin; Lesnik, Philippe; Ponnaiah, Maharajah; Lhomme, Marie; Sertour, Natacha; Devente, Savannah; Docquier, Jean-Denis; Bougnoux, Marie-Elisabeth; Tenaillon, Olivier; Magnan, Melanie; Ruppe, Etienne; Grall, Nathalie; Duval, Xavier; Ehrlich, Dusko; Mentre, France; Denamur, Erick; Rocha, Eduardo P. C.; Le Chatelier, Emmanuelle; Burdet, Charles
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Capsules and their traits shape phage susceptibility and plasmid conjugation efficiency
err2024-03-06
err4
errOAAI
errHaudiquet, Matthieu; Le Bris, Julie; Nucci, Amandine; Bonnin, Remy A.; Domingo-Calap, Pilar; Rocha, Eduardo P. C.; Rendueles, Olaya
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Phage-inducible chromosomal minimalist islands (PICMIs), a novel family of small marine satellites of virulent phages
err2024-01-22
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errOAAI
errBarcia-Cruz, Ruben; Goudenege, David; Moura de Sousa, Jorge A.; Piel, Damien; Marbouty, Martial; Rocha, Eduardo P. C.; Le Roux, Frederique
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Cassette recombination dynamics within chromosomal integrons are regulated by toxin-antitoxin systems
err2024-01-12
err4
errOAAI
errRichard, Egill; Darracq, Baptiste; Littner, Eloi; Vit, Claire; Whiteway, Clemence; Bos, Julia; Fournes, Florian; Garriss, Genevieve; Conte, Valentin; Lapaillerie, Delphine; Parissi, Vincent; Rousset, Francois; Skovgaard, Ole; Bikard, David; Rocha, Eduardo P. C.; Mazel, Didier; Loot, Celine
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Assembly of a unique membrane complex in type VI secretion systems of Bacteroidota
err2024-01-10
err5
errOAAI
errBongiovanni, Thibault R.; Latario, Casey J.; Le Cras, Youn; Trus, Evan; Robitaille, Sophie; Swartz, Kerry; Schmidtke, Danica; Vincent, Maxence; Kosta, Artemis; Orth, Jan; Stengel, Florian; Pellarin, Riccardo; Rocha, Eduardo P. C.; Ross, Benjamin D.; Durand, Eric
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Evo-Scope: Fully automated assessment of correlated evolution on phylogenetic trees
err2023-12-20
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errOAAI
errGodfroid, Maxime; Coluzzi, Charles; Lambert, Amaury; Glaser, Philippe; Rocha, Eduardo P. C.; Achaz, Guillaume
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Antimicrobial resistance level and conjugation permissiveness shape plasmid distribution in clinical enterobacteria
err2023-12-14
err9
errOAAI
errValle, Aida Alonso-del; Toribio-Celestino, Laura; Quirant, Anna; Pi, Carles Tardio; Delafuente, Javier; Canton, Rafael; Rocha, Eduardo P. C.; Ubeda, Carles; Pena-Miller, Rafael; San Millan, Alvaro
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Ongoing shuffling of protein fragments diversifies core viral functions linked to interactions with bacterial hosts
err2023-11-28
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errOAAI
errSmug, Bogna J.; Szczepaniak, Krzysztof; Rocha, Eduardo P. C.; Dunin-Horkawicz, Stanislaw; Mostowy, Rafal J.
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IMG/PR: a database of plasmids from genomes and metagenomes with rich annotations and metadata
err2023-11-01
err16
errOAAI
errCamargo, Antonio Pedro; Call, Lee; Roux, Simon; Nayfach, Stephen; Huntemann, Marcel; Palaniappan, Krishnaveni; Ratner, Anna; Chu, Ken; Mukherjeep, Supratim; Reddy, T. B. K.; Chen, I-Min A.; Ivanova, Natalia N.; Eloe-Fadrosh, Emiley A.; Woyke, Tanja; Baltrus, David A.; Castaneda-Barba, Salvador; de la Cruz, Fernando; Funnell, Barbara E.; Hall, James P. J.; Mukhopadhyay, Aindrila; Rocha, Eduardo P. C.; Stalder, Thibault; Top, Eva; Kyrpides, Nikos C.
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