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Alexander V. Favorov
johns hopkins university
33H-index
265Paper Count
5.5KCitation Count
Published Papers 51
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Comparative assessment of physiochemical metrics for the clustering of adaptive immune receptor repertoires.png)
NUCLEIC ACIDS RESEARCH.png)
2025-11-26
0
OAAI
Girgis, Alexander A.; Huff, Amanda L.; Davis-Marcisak, Emily; Palmer, Theron; Wang, Hanzhi; Kagohara, Luciane T.; Montagne, Janelle M.; Lvovs, Dmitrijs; Danilova, Ludmila; Favorov, Alexander, V; Schneck, Jonathan; Bingham III, Clifton O.; Darrah, Erika; Jaffee, Elizabeth M.; Zaidi, Neeha; Afsari, Bahman; Fertig, Elana J.
NUCLEIC ACIDS RESEARCHIF13.1
2025-11-260OAAIGirgis, Alexander A.; Huff, Amanda L.; Davis-Marcisak, Emily; Palmer, Theron; Wang, Hanzhi; Kagohara, Luciane T.; Montagne, Janelle M.; Lvovs, Dmitrijs; Danilova, Ludmila; Favorov, Alexander, V; Schneck, Jonathan; Bingham III, Clifton O.; Darrah, Erika; Jaffee, Elizabeth M.; Zaidi, Neeha; Afsari, Bahman; Fertig, Elana J..png){kind=icon}
Share.png){kind=icon}
SaveEpigenetic profiling reveals key super-enhancer networks driving oncogenesis in HPV-positive HNSCCiScience2025-10-300OAAIFernando T. Zamuner; Spencer S. Chan; Michael D. Kessler; Ilya E. Vorontsov; Andrey Loginov; Rossin Erbe; Eddie Imada; Deborah X. Xie; Theresa Guo; Elana J. Fertig; Ivan V. Kulakovskiy; Ludmila Danilova; Alexander V. Favorov; Daria A. Gaykalova
iScienceIF4.1
2025-10-300OAAIFernando T. Zamuner; Spencer S. Chan; Michael D. Kessler; Ilya E. Vorontsov; Andrey Loginov; Rossin Erbe; Eddie Imada; Deborah X. Xie; Theresa Guo; Elana J. Fertig; Ivan V. Kulakovskiy; Ludmila Danilova; Alexander V. Favorov; Daria A. GaykalovaShareSaveCD137 agonism enhances anti-PD1 induced activation of expanded CD8+ T cell clones in a neoadjuvant pancreatic cancer clinical trialISCIENCE2025-01-011Montagne, Janelle M.; Mitchell, Jacob T.; Tandurella, Joseph A.; Christenson, Eric S.; Danilova, Ludmila, V; Deshpande, Atul; Loth, Melanie; Sidiropoulos, Dimitrios N.; Davis-Marcisak, Emily; Bergman, Daniel R.; Zhu, Qingfeng; Wang, Hao; Kagohara, Luciane T.; Engle, Logan L.; Green, Benjamin F.; Favorov, Alexander, V; Ho, Won Jin; Lim, Su Jin; Zhang, Rui; Li, Pan; Gai, Jessica; Mo, Guanglan; Mitchell, Sarah; Wang, Rulin; Vaghasia, Ajay; Hou, Wenpin; Xu, Yao; Zimmerman, Jacquelyn W.; Elisseeff, Jennifer H.; Yegnasubramanian, Srinivasan; Anders, Robert A.; Jaffee, Elizabeth M.; Zheng, Lei; Fertig, Elana J.
ISCIENCEIF4.1
2025-01-011PREAI
Montagne, Janelle M.; Mitchell, Jacob T.; Tandurella, Joseph A.; Christenson, Eric S.; Danilova, Ludmila, V; Deshpande, Atul; Loth, Melanie; Sidiropoulos, Dimitrios N.; Davis-Marcisak, Emily; Bergman, Daniel R.; Zhu, Qingfeng; Wang, Hao; Kagohara, Luciane T.; Engle, Logan L.; Green, Benjamin F.; Favorov, Alexander, V; Ho, Won Jin; Lim, Su Jin; Zhang, Rui; Li, Pan; Gai, Jessica; Mo, Guanglan; Mitchell, Sarah; Wang, Rulin; Vaghasia, Ajay; Hou, Wenpin; Xu, Yao; Zimmerman, Jacquelyn W.; Elisseeff, Jennifer H.; Yegnasubramanian, Srinivasan; Anders, Robert A.; Jaffee, Elizabeth M.; Zheng, Lei; Fertig, Elana J.ShareSaveGPU-accelerated Kendall distance computation for large or sparse dataGIGASCIENCE2024-12-090OAAIAkhtyamov, Pavel; Nabi, Ausaaf; Gafurov, Vladislav; Sizykh, Alexey; Favorov, Alexander; Medvedeva, Yulia; Stupnikov, Alexey
GIGASCIENCEIF3.9
2024-12-090OAAIAkhtyamov, Pavel; Nabi, Ausaaf; Gafurov, Vladislav; Sizykh, Alexey; Favorov, Alexander; Medvedeva, Yulia; Stupnikov, AlexeyShareSaveCAGI, the Critical Assessment of Genome Interpretation, establishes progress and prospects for computational genetic variant interpretation methodsGENOME BIOLOGY2024-02-2210OAAIJain, Shantanu; Bakolitsa, Constantina; Brenner, Steven E.; Radivojac, Predrag; Moult, John; Repo, Susanna; Hoskins, Roger A.; Andreoletti, Gaia; Barsky, Daniel; Chellapan, Ajithavalli; Chu, Hoyin; Dabbiru, Navya; Kollipara, Naveen K.; Ly, Melissa; Neumann, Andrew J.; Pal, Lipika R.; Odell, Eric; Pandey, Gaurav; Peters-Petrulewicz, Robin C.; Srinivasan, Rajgopal; Yee, Stephen F.; Yeleswarapu, Sri Jyothsna; Zuhl, Maya; Adebali, Ogun; Patra, Ayoti; Beer, Michael A.; Hosur, Raghavendra; Peng, Jian; Bernard, Brady M.; Berry, Michael; Dong, Shengcheng; Boyle, Alan P.; Adhikari, Aashish; Chen, Jingqi; Hu, Zhiqiang; Wang, Robert; Wang, Yaqiong; Miller, Maximilian; Wang, Yanran; Bromberg, Yana; Turina, Paola; Capriotti, Emidio; Han, James J.; Ozturk, Kivilcim; Carter, Hannah; Babbi, Giulia; Bovo, Samuele; Di Lena, Pietro; Martelli, Pier Luigi; Savojardo, Castrense; Casadio, Rita; Cline, Melissa S.; De Baets, Greet; Bonache, Sandra; Diez, Orland; Gutierrez-Enriquez, Sara; Fernandez, Alejandro; Montalban, Gemma; Ootes, Lars; Ozkan, Selen; Padilla, Natalia; Riera, Casandra; De la Cruz, Xavier; Diekhans, Mark; Huwe, Peter J.; Wei, Qiong; Xu, Qifang; Dunbrack, Roland L.; Gotea, Valer; Elnitski, Laura; Margolin, Gennady; Fariselli, Piero; Kulakovskiy, Ivan V.; Makeev, Vsevolod J.; Penzar, Dmitry D.; Vorontsov, Ilya E.; Favorov, Alexander V.; Forman, Julia R.; Hasenahuer, Marcia; Fornasari, Maria S.; Parisi, Gustavo; Avsec, Ziga; Celik, Muhammed H.; Thi Yen Duong Nguyen; Gagneur, Julien; Shi, Fang-Yuan; Edwards, Matthew D.; Guo, Yuchun; Tian, Kevin; Zeng, Haoyang; Gifford, David K.; Goke, Jonathan; Zaucha, Jan; Gough, Julian; Ritchie, Graham R. S.; Frankish, Adam; Mudge, Jonathan M.; Harrow, Jennifer; Young, Erin L.; Yu, Yao; Huff, Chad D.; Murakami, Katsuhiko; Nagai, Yoko; Imanishi, Tadashi; Mungall, Christopher J.; Jacobsen, Julius O. B.; Kim, Dongsup; Jeong, Chan-Seok; Jones, David T.; Li, Mulin Jun; Guthrie, Violeta Beleva; Bhattacharya, Rohit; Chen, Yun-Ching; Douville, Christopher; Fan, Jean; Kim, Dewey; Masica, David; Niknafs, Noushin; Sengupta, Sohini; Tokheim, Collin; Turner, Tychele N.; Yeo, Hui Ting Grace; Karchin, Rachel; Shin, Sunyoung; Welch, Rene; Keles, Sunduz; Li, Yue; Kellis, Manolis; Corbi-Verge, Carles; Strokach, Alexey V.; Kim, Philip M.; Klein, Teri E.; Mohan, Rahul; Sinnott-Armstrong, Nicholas A.; Wainberg, Michael; Kundaje, Anshul; Gonzaludo, Nina; Mak, Angel C. Y.; Chhibber, Aparna; Lam, Hugo Y. K.; Dahary, Dvir; Fishilevich, Simon; Lancet, Doron; Lee, Insuk; Bachman, Benjamin; Katsonis, Panagiotis; Lua, Rhonald C.; Wilson, Stephen J.; Lichtarge, Olivier; Bhat, Rajendra R.; Sundaram, Laksshman; Viswanath, Vivek; Bellazzi, Riccardo; Nicora, Giovanna; Rizzo, Ettore; Limongelli, Ivan; Mezlini, Aziz M.; Chang, Ray; Kim, Serra; Lai, Carmen; O'Connor, Robert; Topper, Scott; van den Akker, Jeroen; Zhou, Alicia Y.; Zimmer, Anjali D.; Mishne, Gilad; Bergquist, Timothy R.; Breese, Marcus R.; Guerrero, Rafael F.; Jiang, Yuxiang; Kiga, Nikki; Li, Biao; Mort, Matthew; Pagel, Kymberleigh A.; Pejaver, Vikas; Stamboulian, Moses H.; Thusberg, Janita; Mooney, Sean D.; Teerakulkittipong, Nuttinee; Cao, Chen; Kundu, Kunal; Yin, Yizhou; Yu, Chen-Hsin; Kleyman, Michael; Lin, Chiao-Feng; Stackpole, Mary; Mount, Stephen M.; Eraslan, Gokcen; Mueller, Nikola S.; Naito, Tatsuhiko; Rao, Aliz R.; Azaria, Johnathan R.; Brodie, Aharon; Ofran, Yanay; Garg, Aditi; Pal, Debnath; Hawkins-Hooker, Alex; Kenlay, Henry; Reid, John; Mucaki, Eliseos J.; Rogan, Peter K.; Schwarz, Jana M.; Searls, David B.; Lee, Gyu Rie; Seok, Chaok; Kramer, Andreas; Shah, Sohela; Huang, ChengLai V.; Kirsch, Jack F.; Shatsky, Maxim; Cao, Yue; Chen, Haoran; Karimi, Mostafa; Moronfoye, Oluwaseyi; Sun, Yuanfei; Shen, Yang; Shigeta, Ron; Ford, Colby T.; Nodzak, Conor; Uppal, Aneeta; Shi, Xinghua; Joseph, Thomas; Kotte, Sujatha; Rana, Sadhna; Rao, Aditya; Saipradeep, V. G.; Sivadasan, Naveen; Sunderam, Uma; Stanke, Mario; Su, Andrew; Adzhubey, Ivan; Jordan, Daniel M.; Sunyaev, Shamil; Rousseau, Frederic; Schymkowitz, Joost; Van Durme, Joost; Tavtigian, Sean V.; Carraro, Marco; Giollo, Manuel; Tosatto, Silvio C. E.; Adato, Orit; Carmel, Liran; Cohen, Noa E.; Fenesh, Izila; Holtzer, Iamar; Juven-Gershon, Tamar; Unger, Ron; Niroula, Abhishek; Olatubosun, Ayodeji; Valiaho, Jouni; Yang, Yang; Vihinen, Mauno; Wahl, Mary E.; Chang, Billy; Chong, Ka Chun; Hu, Inchi; Sun, Rui; Wu, William Ka Kei; Xia, Xiaoxuan; Zee, Benny C.; Wang, Maggie H.; Wang, Meng; Wu, Chunlei; Lu, Yutong; Chen, Ken; Yang, Yuedong; Yates, Christopher M.; Kreimer, Anat; Yan, Zhongxia; Yosef, Nir; Zhao, Huying; Wei, Zhipeng; Yao, Zhaomin; Zhou, Fengfeng; Folkman, Lukas; Zhou, Yaoqi; Daneshjou, Roxana; Altman, Russ B.; Inoue, Fumitaka; Ahituv, Nadav; Arkin, Adam P.; Lovisa, Federica; Bonvini, Paolo; Bowdin, Sarah; Gianni, Stefano; Mantuano, Elide; Minicozzi, Velia; Novak, Leonore; Pasquo, Alessandra; Pastore, Annalisa; Petrosino, Maria; Puglisi, Rita; Toto, Angelo; Veneziano, Liana; Chiaraluce, Roberta; Ball, Mad P.; Bobe, Jason R.; Church, George M.; Consalvi, Valerio; Mort, Matthew; Cooper, David N.; Buckley, Bethany A.; Sheridan, Molly B.; Cutting, Garry R.; Scaini, Maria Chiara; Cygan, Kamil J.; Fredericks, Alger M.; Glidden, David T.; Neil, Christopher; Rhine, Christy L.; Fairbrother, William G.; Alontaga, Aileen Y.; Fenton, Aron W.; Matreyek, Kenneth A.; Starita, Lea M.; Fowler, Douglas M.; Loescher, Britt-Sabina; Franke, Andre; Adamson, Scott I.; Graveley, Brenton R.; Gray, Joe W.; Malloy, Mary J.; Kane, John P.; Kousi, Maria; Katsanis, Nicholas; Schubach, Max; Kircher, Martin; Tang, Paul L. F.; Kwok, Pui-Yan; Lathrop, Richard H.; Clark, Wyatt T.; Yu, Guoying K.; LeBowitz, Jonathan H.; Benedicenti, Francesco; Bettella, Elisa; Bigoni, Stefania; Cesca, Federica; Mammi, Isabella; Marino-Bus-Ije, Cristina; Milani, Donatella; Peron, Angela; Polli, Roberta; Sartori, Stefano; Stanzial, Franco; Ioldo, Irene; Turolla, Licia; Aspromonte, Maria C.; Bellini, Mariagrazia; Leonardi, Emanuela; Liu, Xiaoming; Marshall, Christian; McCombie, W. Richard; Elefanti, Lisa; Menin, Chiara; Meyn, M. Stephen; Murgia, Alessandra; Nadeau, Kari C. Y.; Neuhausen, Susan L.; Nussbaum, Robert L.; Pirooznia, Mehdi; Potash, James B.; Dimster-Denk, Dago F.; Rine, Jasper D.; Sanford, Jeremy R.; Snyder, Michael; Tavtigian, Sean V.; Cole, Alina G.; Sun, Song; Verby, Marta W.; Weile, Jochen; Roth, Frederick P.; Tewhey, Ryan; Sabeti, Pardis C.; Campagna, Joan; Refaat, Marwan M.; Wojciak, Julianne; Grubb, Soren; Schmitt, Nicole; Shendure, Jay; Spurdle, Amanda B.; Stavropoulos, Dimitri J.; Walton, Nephi A.; Zandi, Peter P.; Ziv, Elad; Burke, Wylie; Chen, Flavia; Carr, Lawrence R.; Martinez, Selena; Paik, Jodi; Harris-Wai, Julie; Yarborough, Mark; Fullerton, Stephanie M.; Koenig, Barbara A.; McInnes, Gregory; Shigaki, Dustin; Chandonia, John-Marc; Furutsuki, Mabel; Kasak, Laura; Yu, Changhua; Chen, Rui; Cline, Melissa S.; Pandey, Gaurav; Friedberg, Iddo; Getz, Gad A.; Cong, Qian; Kinch, Lisa N.; Zhang, Jing; Grishin, Nick V.; Voskanian, Alin; Kann, Maricel G.; Clark, Wyatt T.; Tran, Elizabeth; Ioannidis, Nilah M.; Hunter, Jesse M.; Udani, Rupa; Cai, Binghuang; Morgan, Alexander A.; Sokolov, Artem; Stuart, Joshua M.; Tavtigian, Sean V.; Minervini, Giovanni; Monzon, Alexander M.; Batzoglou, Serafim; Butte, Atul J.; Church, George M.; Greenblatt, Marc S.; Hart, Reece K.; Hernandez, Ryan; Hubbard, Tim J. P.; Kahn, Scott; O'Donnell-Luria, Anne; Ng, Pauline C.; Shon, John; Tavtigian, Sean V.; Veltman, Joris; Zook, Justin M.
GENOME BIOLOGYIF9.4
2024-02-2210OAAIJain, Shantanu; Bakolitsa, Constantina; Brenner, Steven E.; Radivojac, Predrag; Moult, John; Repo, Susanna; Hoskins, Roger A.; Andreoletti, Gaia; Barsky, Daniel; Chellapan, Ajithavalli; Chu, Hoyin; Dabbiru, Navya; Kollipara, Naveen K.; Ly, Melissa; Neumann, Andrew J.; Pal, Lipika R.; Odell, Eric; Pandey, Gaurav; Peters-Petrulewicz, Robin C.; Srinivasan, Rajgopal; Yee, Stephen F.; Yeleswarapu, Sri Jyothsna; Zuhl, Maya; Adebali, Ogun; Patra, Ayoti; Beer, Michael A.; Hosur, Raghavendra; Peng, Jian; Bernard, Brady M.; Berry, Michael; Dong, Shengcheng; Boyle, Alan P.; Adhikari, Aashish; Chen, Jingqi; Hu, Zhiqiang; Wang, Robert; Wang, Yaqiong; Miller, Maximilian; Wang, Yanran; Bromberg, Yana; Turina, Paola; Capriotti, Emidio; Han, James J.; Ozturk, Kivilcim; Carter, Hannah; Babbi, Giulia; Bovo, Samuele; Di Lena, Pietro; Martelli, Pier Luigi; Savojardo, Castrense; Casadio, Rita; Cline, Melissa S.; De Baets, Greet; Bonache, Sandra; Diez, Orland; Gutierrez-Enriquez, Sara; Fernandez, Alejandro; Montalban, Gemma; Ootes, Lars; Ozkan, Selen; Padilla, Natalia; Riera, Casandra; De la Cruz, Xavier; Diekhans, Mark; Huwe, Peter J.; Wei, Qiong; Xu, Qifang; Dunbrack, Roland L.; Gotea, Valer; Elnitski, Laura; Margolin, Gennady; Fariselli, Piero; Kulakovskiy, Ivan V.; Makeev, Vsevolod J.; Penzar, Dmitry D.; Vorontsov, Ilya E.; Favorov, Alexander V.; Forman, Julia R.; Hasenahuer, Marcia; Fornasari, Maria S.; Parisi, Gustavo; Avsec, Ziga; Celik, Muhammed H.; Thi Yen Duong Nguyen; Gagneur, Julien; Shi, Fang-Yuan; Edwards, Matthew D.; Guo, Yuchun; Tian, Kevin; Zeng, Haoyang; Gifford, David K.; Goke, Jonathan; Zaucha, Jan; Gough, Julian; Ritchie, Graham R. S.; Frankish, Adam; Mudge, Jonathan M.; Harrow, Jennifer; Young, Erin L.; Yu, Yao; Huff, Chad D.; Murakami, Katsuhiko; Nagai, Yoko; Imanishi, Tadashi; Mungall, Christopher J.; Jacobsen, Julius O. B.; Kim, Dongsup; Jeong, Chan-Seok; Jones, David T.; Li, Mulin Jun; Guthrie, Violeta Beleva; Bhattacharya, Rohit; Chen, Yun-Ching; Douville, Christopher; Fan, Jean; Kim, Dewey; Masica, David; Niknafs, Noushin; Sengupta, Sohini; Tokheim, Collin; Turner, Tychele N.; Yeo, Hui Ting Grace; Karchin, Rachel; Shin, Sunyoung; Welch, Rene; Keles, Sunduz; Li, Yue; Kellis, Manolis; Corbi-Verge, Carles; Strokach, Alexey V.; Kim, Philip M.; Klein, Teri E.; Mohan, Rahul; Sinnott-Armstrong, Nicholas A.; Wainberg, Michael; Kundaje, Anshul; Gonzaludo, Nina; Mak, Angel C. Y.; Chhibber, Aparna; Lam, Hugo Y. K.; Dahary, Dvir; Fishilevich, Simon; Lancet, Doron; Lee, Insuk; Bachman, Benjamin; Katsonis, Panagiotis; Lua, Rhonald C.; Wilson, Stephen J.; Lichtarge, Olivier; Bhat, Rajendra R.; Sundaram, Laksshman; Viswanath, Vivek; Bellazzi, Riccardo; Nicora, Giovanna; Rizzo, Ettore; Limongelli, Ivan; Mezlini, Aziz M.; Chang, Ray; Kim, Serra; Lai, Carmen; O'Connor, Robert; Topper, Scott; van den Akker, Jeroen; Zhou, Alicia Y.; Zimmer, Anjali D.; Mishne, Gilad; Bergquist, Timothy R.; Breese, Marcus R.; Guerrero, Rafael F.; Jiang, Yuxiang; Kiga, Nikki; Li, Biao; Mort, Matthew; Pagel, Kymberleigh A.; Pejaver, Vikas; Stamboulian, Moses H.; Thusberg, Janita; Mooney, Sean D.; Teerakulkittipong, Nuttinee; Cao, Chen; Kundu, Kunal; Yin, Yizhou; Yu, Chen-Hsin; Kleyman, Michael; Lin, Chiao-Feng; Stackpole, Mary; Mount, Stephen M.; Eraslan, Gokcen; Mueller, Nikola S.; Naito, Tatsuhiko; Rao, Aliz R.; Azaria, Johnathan R.; Brodie, Aharon; Ofran, Yanay; Garg, Aditi; Pal, Debnath; Hawkins-Hooker, Alex; Kenlay, Henry; Reid, John; Mucaki, Eliseos J.; Rogan, Peter K.; Schwarz, Jana M.; Searls, David B.; Lee, Gyu Rie; Seok, Chaok; Kramer, Andreas; Shah, Sohela; Huang, ChengLai V.; Kirsch, Jack F.; Shatsky, Maxim; Cao, Yue; Chen, Haoran; Karimi, Mostafa; Moronfoye, Oluwaseyi; Sun, Yuanfei; Shen, Yang; Shigeta, Ron; Ford, Colby T.; Nodzak, Conor; Uppal, Aneeta; Shi, Xinghua; Joseph, Thomas; Kotte, Sujatha; Rana, Sadhna; Rao, Aditya; Saipradeep, V. G.; Sivadasan, Naveen; Sunderam, Uma; Stanke, Mario; Su, Andrew; Adzhubey, Ivan; Jordan, Daniel M.; Sunyaev, Shamil; Rousseau, Frederic; Schymkowitz, Joost; Van Durme, Joost; Tavtigian, Sean V.; Carraro, Marco; Giollo, Manuel; Tosatto, Silvio C. E.; Adato, Orit; Carmel, Liran; Cohen, Noa E.; Fenesh, Izila; Holtzer, Iamar; Juven-Gershon, Tamar; Unger, Ron; Niroula, Abhishek; Olatubosun, Ayodeji; Valiaho, Jouni; Yang, Yang; Vihinen, Mauno; Wahl, Mary E.; Chang, Billy; Chong, Ka Chun; Hu, Inchi; Sun, Rui; Wu, William Ka Kei; Xia, Xiaoxuan; Zee, Benny C.; Wang, Maggie H.; Wang, Meng; Wu, Chunlei; Lu, Yutong; Chen, Ken; Yang, Yuedong; Yates, Christopher M.; Kreimer, Anat; Yan, Zhongxia; Yosef, Nir; Zhao, Huying; Wei, Zhipeng; Yao, Zhaomin; Zhou, Fengfeng; Folkman, Lukas; Zhou, Yaoqi; Daneshjou, Roxana; Altman, Russ B.; Inoue, Fumitaka; Ahituv, Nadav; Arkin, Adam P.; Lovisa, Federica; Bonvini, Paolo; Bowdin, Sarah; Gianni, Stefano; Mantuano, Elide; Minicozzi, Velia; Novak, Leonore; Pasquo, Alessandra; Pastore, Annalisa; Petrosino, Maria; Puglisi, Rita; Toto, Angelo; Veneziano, Liana; Chiaraluce, Roberta; Ball, Mad P.; Bobe, Jason R.; Church, George M.; Consalvi, Valerio; Mort, Matthew; Cooper, David N.; Buckley, Bethany A.; Sheridan, Molly B.; Cutting, Garry R.; Scaini, Maria Chiara; Cygan, Kamil J.; Fredericks, Alger M.; Glidden, David T.; Neil, Christopher; Rhine, Christy L.; Fairbrother, William G.; Alontaga, Aileen Y.; Fenton, Aron W.; Matreyek, Kenneth A.; Starita, Lea M.; Fowler, Douglas M.; Loescher, Britt-Sabina; Franke, Andre; Adamson, Scott I.; Graveley, Brenton R.; Gray, Joe W.; Malloy, Mary J.; Kane, John P.; Kousi, Maria; Katsanis, Nicholas; Schubach, Max; Kircher, Martin; Tang, Paul L. F.; Kwok, Pui-Yan; Lathrop, Richard H.; Clark, Wyatt T.; Yu, Guoying K.; LeBowitz, Jonathan H.; Benedicenti, Francesco; Bettella, Elisa; Bigoni, Stefania; Cesca, Federica; Mammi, Isabella; Marino-Bus-Ije, Cristina; Milani, Donatella; Peron, Angela; Polli, Roberta; Sartori, Stefano; Stanzial, Franco; Ioldo, Irene; Turolla, Licia; Aspromonte, Maria C.; Bellini, Mariagrazia; Leonardi, Emanuela; Liu, Xiaoming; Marshall, Christian; McCombie, W. Richard; Elefanti, Lisa; Menin, Chiara; Meyn, M. Stephen; Murgia, Alessandra; Nadeau, Kari C. Y.; Neuhausen, Susan L.; Nussbaum, Robert L.; Pirooznia, Mehdi; Potash, James B.; Dimster-Denk, Dago F.; Rine, Jasper D.; Sanford, Jeremy R.; Snyder, Michael; Tavtigian, Sean V.; Cole, Alina G.; Sun, Song; Verby, Marta W.; Weile, Jochen; Roth, Frederick P.; Tewhey, Ryan; Sabeti, Pardis C.; Campagna, Joan; Refaat, Marwan M.; Wojciak, Julianne; Grubb, Soren; Schmitt, Nicole; Shendure, Jay; Spurdle, Amanda B.; Stavropoulos, Dimitri J.; Walton, Nephi A.; Zandi, Peter P.; Ziv, Elad; Burke, Wylie; Chen, Flavia; Carr, Lawrence R.; Martinez, Selena; Paik, Jodi; Harris-Wai, Julie; Yarborough, Mark; Fullerton, Stephanie M.; Koenig, Barbara A.; McInnes, Gregory; Shigaki, Dustin; Chandonia, John-Marc; Furutsuki, Mabel; Kasak, Laura; Yu, Changhua; Chen, Rui; Cline, Melissa S.; Pandey, Gaurav; Friedberg, Iddo; Getz, Gad A.; Cong, Qian; Kinch, Lisa N.; Zhang, Jing; Grishin, Nick V.; Voskanian, Alin; Kann, Maricel G.; Clark, Wyatt T.; Tran, Elizabeth; Ioannidis, Nilah M.; Hunter, Jesse M.; Udani, Rupa; Cai, Binghuang; Morgan, Alexander A.; Sokolov, Artem; Stuart, Joshua M.; Tavtigian, Sean V.; Minervini, Giovanni; Monzon, Alexander M.; Batzoglou, Serafim; Butte, Atul J.; Church, George M.; Greenblatt, Marc S.; Hart, Reece K.; Hernandez, Ryan; Hubbard, Tim J. P.; Kahn, Scott; O'Donnell-Luria, Anne; Ng, Pauline C.; Shon, John; Tavtigian, Sean V.; Veltman, Joris; Zook, Justin M.ShareSaveHOCOMOCO in 2024: a rebuild of the curated collection of binding models for human and mouse transcription factorsNUCLEIC ACIDS RESEARCH2023-11-1613OAAIVorontsov, Ilya E.; Eliseeva, Irina A.; Zinkevich, Arsenii; Nikonov, Mikhail; Abramov, Sergey; Boytsov, Alexandr; Kamenets, Vasily; Kasianova, Alexandra; Kolmykov, Semyon; Yevshin, Ivan S.; Favorov, Alexander; Medvedeva, Yulia A.; Jolma, Arttu; Kolpakov, Fedor; Makeev, Vsevolod J.; Kulakovskiy, Ivan, V
NUCLEIC ACIDS RESEARCHIF13.1
2023-11-1613OAAIVorontsov, Ilya E.; Eliseeva, Irina A.; Zinkevich, Arsenii; Nikonov, Mikhail; Abramov, Sergey; Boytsov, Alexandr; Kamenets, Vasily; Kasianova, Alexandra; Kolmykov, Semyon; Yevshin, Ivan S.; Favorov, Alexander; Medvedeva, Yulia A.; Jolma, Arttu; Kolpakov, Fedor; Makeev, Vsevolod J.; Kulakovskiy, Ivan, VShareSaveUncovering the spatial landscape of molecular interactions within the tumor microenvironment through latent spaces (vol 14, pg 285, 2023)CELL SYSTEMS2023-08-011
OAAIDeshpande, Atul; Loth, Melanie; Sidiropoulos, Dimitrios N.; Zhang, Shuming; Yuan, Long; Bell, Alexander T. F.; Zhu, Qingfeng; Ho, Won Jin; Santa-Maria, Cesar; Gilkes, Daniele M.; Williams, Stephen R.; Uytingco, Cedric R.; Chew, Jennifer; Hartnett, Andrej; Bent, Zachary W.; V. Favorov, Alexander; Popel, Aleksander S.; Yarchoan, Mark; Kiemen, Ashley; Wu, Pei-Hsun; Fujikura, Kohei; Wirtz, Denis; Wood, Laura D.; Zheng, Lei; Jaffee, Elizabeth M.; Anders, Robert A.; Danilova, Ludmila; Stein-O'Brien, Genevieve; Kagohara, Luciane T.; Fertig, Elana J.
CELL SYSTEMSIF7.7
2023-08-011OAAIDeshpande, Atul; Loth, Melanie; Sidiropoulos, Dimitrios N.; Zhang, Shuming; Yuan, Long; Bell, Alexander T. F.; Zhu, Qingfeng; Ho, Won Jin; Santa-Maria, Cesar; Gilkes, Daniele M.; Williams, Stephen R.; Uytingco, Cedric R.; Chew, Jennifer; Hartnett, Andrej; Bent, Zachary W.; V. Favorov, Alexander; Popel, Aleksander S.; Yarchoan, Mark; Kiemen, Ashley; Wu, Pei-Hsun; Fujikura, Kohei; Wirtz, Denis; Wood, Laura D.; Zheng, Lei; Jaffee, Elizabeth M.; Anders, Robert A.; Danilova, Ludmila; Stein-O'Brien, Genevieve; Kagohara, Luciane T.; Fertig, Elana J.ShareSaveSingle-cell RNA and TCR sequencing of tumor infiltrating lymphocytes identifies changes in pancreatic ductal adenocarcinomas following neoadjuvant treatment with combined anti-PD-1 blocking and anti-CD137 agonist therapyCANCER RESEARCH2023-04-040Tandurella, Joseph A.; Mitchell, Jacob T.; Montagne, Janelle M.; Christenson, Eric; Zhu, Qingfeng; Danilova, Ludmilla V.; Favorov, Alexander V.; Ho, Won J.; Kagohara, Luciane T.; Loth, Melanie; Lim, Su Jin; Zheng, Rui; Gai, Jessica; Mitchell, Sarah; Sidiropoulos, Dimitrios N.; Hou, Wenpin; Xu, Yao; Wang, Hao; Zimmerman, Jacquelyn W.; Yegnasubramanian, Srinivasan; Anders, Robert; Jaffee, Elizabeth M.; Zheng, Lei; Fertig, Elana J.
CANCER RESEARCHIF16.6
2023-04-040PREAI
Tandurella, Joseph A.; Mitchell, Jacob T.; Montagne, Janelle M.; Christenson, Eric; Zhu, Qingfeng; Danilova, Ludmilla V.; Favorov, Alexander V.; Ho, Won J.; Kagohara, Luciane T.; Loth, Melanie; Lim, Su Jin; Zheng, Rui; Gai, Jessica; Mitchell, Sarah; Sidiropoulos, Dimitrios N.; Hou, Wenpin; Xu, Yao; Wang, Hao; Zimmerman, Jacquelyn W.; Yegnasubramanian, Srinivasan; Anders, Robert; Jaffee, Elizabeth M.; Zheng, Lei; Fertig, Elana J.ShareSaveUncovering the spatial landscape of molecular interactions within the tumor microenvironment through latent spacesCELL SYSTEMS2023-04-0113OAAIDeshpande, Atul; Loth, Melanie; Sidiropoulos, Dimitrios N.; Zhang, Shuming; Yuan, Long; Bell, Alexander T. F.; Zhu, Qingfeng; Ho, Won Jin; Santa-Maria, Cesar; Gilkes, Daniele M.; Williams, Stephen R.; Uytingco, Cedric R.; Chew, Jennifer; Hartnett, Andrej; Bent, Zachary W.; Favorov, Alexander V.; Popel, Aleksander S.; Yarchoan, Mark; Kiemen, Ashley; Wu, Pei-Hsun; Fujikura, Kohei; Wirtz, Denis; Wood, Laura D.; Zheng, Lei; Jaffee, Elizabeth M.; Anders, Robert A.; Danilova, Ludmila; Stein-O'Brien, Genevieve; Kagohara, Luciane T.; Fertig, Elana J.
CELL SYSTEMSIF7.7
2023-04-0113OAAIDeshpande, Atul; Loth, Melanie; Sidiropoulos, Dimitrios N.; Zhang, Shuming; Yuan, Long; Bell, Alexander T. F.; Zhu, Qingfeng; Ho, Won Jin; Santa-Maria, Cesar; Gilkes, Daniele M.; Williams, Stephen R.; Uytingco, Cedric R.; Chew, Jennifer; Hartnett, Andrej; Bent, Zachary W.; Favorov, Alexander V.; Popel, Aleksander S.; Yarchoan, Mark; Kiemen, Ashley; Wu, Pei-Hsun; Fujikura, Kohei; Wirtz, Denis; Wood, Laura D.; Zheng, Lei; Jaffee, Elizabeth M.; Anders, Robert A.; Danilova, Ludmila; Stein-O'Brien, Genevieve; Kagohara, Luciane T.; Fertig, Elana J.ShareSaveDeconvolution of B cell receptor repertoire in multiple sclerosis patients revealed a delay in tBreg maturation2022-08-167OAAILomakin, Yakov A. A.; Zvyagin, Ivan V. V.; Ovchinnikova, Leyla A. A.; Kabilov, Marsel R. R.; Staroverov, Dmitriy B. B.; Mikelov, Artem; Tupikin, Alexey E. E.; Zakharova, Maria Y. Y.; Bykova, Nadezda A. A.; Mukhina, Vera S. S.; Favorov, Alexander V. V.; Ivanova, Maria; Simaniv, Taras; Rubtsov, Yury P. P.; Chudakov, Dmitriy M. M.; Zakharova, Maria N. N.; Illarioshkin, Sergey N. N.; Belogurov Jr, Alexey A. A.; Gabibov, Alexander G. G.
2022-08-167OAAILomakin, Yakov A. A.; Zvyagin, Ivan V. V.; Ovchinnikova, Leyla A. A.; Kabilov, Marsel R. R.; Staroverov, Dmitriy B. B.; Mikelov, Artem; Tupikin, Alexey E. E.; Zakharova, Maria Y. Y.; Bykova, Nadezda A. A.; Mukhina, Vera S. S.; Favorov, Alexander V. V.; Ivanova, Maria; Simaniv, Taras; Rubtsov, Yury P. P.; Chudakov, Dmitriy M. M.; Zakharova, Maria N. N.; Illarioshkin, Sergey N. N.; Belogurov Jr, Alexey A. A.; Gabibov, Alexander G. G.ShareSaveSpatial correlation statistics enable transcriptome-wide characterization of RNA structure bindingCELL REPORTS METHODS2021-10-013OAAIBusa, Veronica F.; Favorov, Alexander, V; Fertig, Elana J.; Leung, Anthony K. L.
CELL REPORTS METHODSIF4.5
2021-10-013OAAIBusa, Veronica F.; Favorov, Alexander, V; Fertig, Elana J.; Leung, Anthony K. L.ShareSaveLandscape of allele-specific transcription factor binding in the human genomeNATURE COMMUNICATIONS2021-05-1256OAAIAbramov, Sergey; Boytsov, Alexandr; Bykova, Daria; Penzar, Dmitry D.; Yevshin, Ivan; Kolmykov, Semyon K.; Fridman, Marina, V; Favorov, Alexander, V; Vorontsov, Ilya E.; Baulin, Eugene; Kolpakov, Fedor; Makeev, Vsevolod J.; Kulakovskiy, Ivan, V
NATURE COMMUNICATIONSIF15.7
2021-05-1256OAAIAbramov, Sergey; Boytsov, Alexandr; Bykova, Daria; Penzar, Dmitry D.; Yevshin, Ivan; Kolmykov, Semyon K.; Fridman, Marina, V; Favorov, Alexander, V; Vorontsov, Ilya E.; Baulin, Eugene; Kolpakov, Fedor; Makeev, Vsevolod J.; Kulakovskiy, Ivan, VShareSaveNewly Identified Members of FGFR1 Splice Variants Engage in Cross-talk with AXL/AKT Axis in Salivary Adenoid Cystic CarcinomaCANCER RESEARCH2021-02-1513OAAIHumtsoe, Joseph O.; Kim, Hyun-Su; Leonard, Brandon; Ling, Shizhang; Keam, Bhumsuk; Marchionni, Luigi; Afsari, Bahman; Considine, Michael; Favorov, Alexander, V; Fertig, Elana J.; Kang, Hyunseok; Ha, Patrick K.
CANCER RESEARCHIF16.6
2021-02-1513OAAIHumtsoe, Joseph O.; Kim, Hyun-Su; Leonard, Brandon; Ling, Shizhang; Keam, Bhumsuk; Marchionni, Luigi; Afsari, Bahman; Considine, Michael; Favorov, Alexander, V; Fertig, Elana J.; Kang, Hyunseok; Ha, Patrick K.ShareSaveSupervised mutational signatures for obesity and other tissue-specific etiological factors in cancerELIFE2021-01-2514OAAIAfsari, Bahman; Kuo, Albert; Zhang, YiFan; Li, Lu; Lahouel, Kamel; Danilova, Ludmila; Favorov, Alexander; Rosenquist, Thomas A.; Grollman, Arthur P.; Kinzler, Ken W.; Cope, Leslie; Vogelstein, Bert; Tomasetti, Cristian
ELIFEIF0
2021-01-2514OAAIAfsari, Bahman; Kuo, Albert; Zhang, YiFan; Li, Lu; Lahouel, Kamel; Danilova, Ludmila; Favorov, Alexander; Rosenquist, Thomas A.; Grollman, Arthur P.; Kinzler, Ken W.; Cope, Leslie; Vogelstein, Bert; Tomasetti, CristianShareSaveFunctional annotation of human long noncoding RNAs via molecular phenotyping (vol 30, pg 1060, 2020)GENOME RESEARCH2020-09-141OAAIRamilowski, Jordan A.; Yip, Chi Wai; Agrawal, Saumya; Chang, Jen-Chien; Ciani, Yari; Kulakovskiy, Ivan V.; Mendez, Mickael; Ooi, Jasmine Li Ching; Ouyang, John F.; Parkinson, Nick; Petri, Andreas; Roos, Leonie; Severin, Jessica; Yasuzawa, Kayoko; Abugessaisa, Imad; Akalin, Altuna; Antonov, Ivan V.; Arner, Erik; Bonetti, Alessandro; Bono, Hidemasa; Borsari, Beatrice; Brombacher, Frank; Cameron, Christopher J. F.; Cannistraci, Carlo Vittorio; Cardenas, Ryan; Cardon, Melissa; Chang, Howard; Dostie, Josee; Ducoli, Luca; Favorov, Alexander; Fort, Alexandre; Garrido, Diego; Gil, Noa; Gimenez, Juliette; Guler, Reto; Handoko, Lusy; Harshbarger, Jayson; Hasegawa, Akira; Hasegawa, Yuki; Hashimoto, Kosuke; Hayatsu, Norihito; Heutink, Peter; Hirose, Tetsuro; Imada, Eddie L.; Itoh, Masayoshi; Kaczkowski, Bogumil; Kanhere, Aditi; Kawabata, Emily; Kawaji, Hideya; Kawashima, Tsugumi; Kelly, S. Thomas; Kojima, Miki; Kondo, Naoto; Koseki, Haruhiko; Kouno, Tsukasa; Kratz, Anton; Kurowska-Stolarska, Mariola; Kwon, Andrew Tae Jun; Leek, Jeffrey; Lennartsson, Andreas; Lizio, Marina; Lopez-Redondo, Fernando; Luginbuhl, Joachim; Maeda, Shiori; Makeev, Vsevolod J.; Marchionni, Luigi; Medvedeva, Yulia A.; Minoda, Aki; Muller, Ferenc; Munoz-Aguirre, Manuel; Murata, Mitsuyoshi; Nishiyori, Hiromi; Nitta, Kazuhiro R.; Noguchi, Shuhei; Noro, Yukihiko; Nurtdinov, Ramil; Okazaki, Yasushi; Orlando, Valerio; Paquette, Denis; Parr, Callum J. C.; Rackham, Owen J. L.; Rizzu, Patrizia; Martinez, Diego Fernando Sanchez; Sandelin, Albin; Sanjana, Pillay; Semple, Colin A. M.; Shibayama, Youtaro; Sivaraman, Divya M.; Suzuki, Takahiro; Szumowski, Suzannah C.; Tagami, Michihira; Taylor, Martin S.; Terao, Chikashi; Thodberg, Malte; Thongjuea, Supat; Tripathi, Vidisha; Ulitsky, Igor; Verardo, Roberto; Vorontsov, Ilya E.; Yamamoto, Chinatsu; Young, Robert S.; Baillie, J. Kenneth; Forrest, Alistair R. R.; Guigo, Roderic; Hoffman, Michael M.; Hon, Chung Chau; Kasukawa, Takeya; Kauppinen, Sakari; Kere, Juha; Lenhard, Boris; Schneider, Claudio; Suzuki, Harukazu; Yagi, Ken; de Hoon, Michiel J. L.; Shin, Jay W.; Carninci, Piero
GENOME RESEARCHIF5.5
2020-09-141OAAIRamilowski, Jordan A.; Yip, Chi Wai; Agrawal, Saumya; Chang, Jen-Chien; Ciani, Yari; Kulakovskiy, Ivan V.; Mendez, Mickael; Ooi, Jasmine Li Ching; Ouyang, John F.; Parkinson, Nick; Petri, Andreas; Roos, Leonie; Severin, Jessica; Yasuzawa, Kayoko; Abugessaisa, Imad; Akalin, Altuna; Antonov, Ivan V.; Arner, Erik; Bonetti, Alessandro; Bono, Hidemasa; Borsari, Beatrice; Brombacher, Frank; Cameron, Christopher J. F.; Cannistraci, Carlo Vittorio; Cardenas, Ryan; Cardon, Melissa; Chang, Howard; Dostie, Josee; Ducoli, Luca; Favorov, Alexander; Fort, Alexandre; Garrido, Diego; Gil, Noa; Gimenez, Juliette; Guler, Reto; Handoko, Lusy; Harshbarger, Jayson; Hasegawa, Akira; Hasegawa, Yuki; Hashimoto, Kosuke; Hayatsu, Norihito; Heutink, Peter; Hirose, Tetsuro; Imada, Eddie L.; Itoh, Masayoshi; Kaczkowski, Bogumil; Kanhere, Aditi; Kawabata, Emily; Kawaji, Hideya; Kawashima, Tsugumi; Kelly, S. Thomas; Kojima, Miki; Kondo, Naoto; Koseki, Haruhiko; Kouno, Tsukasa; Kratz, Anton; Kurowska-Stolarska, Mariola; Kwon, Andrew Tae Jun; Leek, Jeffrey; Lennartsson, Andreas; Lizio, Marina; Lopez-Redondo, Fernando; Luginbuhl, Joachim; Maeda, Shiori; Makeev, Vsevolod J.; Marchionni, Luigi; Medvedeva, Yulia A.; Minoda, Aki; Muller, Ferenc; Munoz-Aguirre, Manuel; Murata, Mitsuyoshi; Nishiyori, Hiromi; Nitta, Kazuhiro R.; Noguchi, Shuhei; Noro, Yukihiko; Nurtdinov, Ramil; Okazaki, Yasushi; Orlando, Valerio; Paquette, Denis; Parr, Callum J. C.; Rackham, Owen J. L.; Rizzu, Patrizia; Martinez, Diego Fernando Sanchez; Sandelin, Albin; Sanjana, Pillay; Semple, Colin A. M.; Shibayama, Youtaro; Sivaraman, Divya M.; Suzuki, Takahiro; Szumowski, Suzannah C.; Tagami, Michihira; Taylor, Martin S.; Terao, Chikashi; Thodberg, Malte; Thongjuea, Supat; Tripathi, Vidisha; Ulitsky, Igor; Verardo, Roberto; Vorontsov, Ilya E.; Yamamoto, Chinatsu; Young, Robert S.; Baillie, J. Kenneth; Forrest, Alistair R. R.; Guigo, Roderic; Hoffman, Michael M.; Hon, Chung Chau; Kasukawa, Takeya; Kauppinen, Sakari; Kere, Juha; Lenhard, Boris; Schneider, Claudio; Suzuki, Harukazu; Yagi, Ken; de Hoon, Michiel J. L.; Shin, Jay W.; Carninci, PieroShareSaveSenescence and entrenchment in evolution of amino acid sitesNATURE COMMUNICATIONS2020-09-144OAAIStolyarova, A. V.; Nabieva, E.; Ptushenko, V. V.; Favorov, A. V.; Popova, A. V.; Neverov, A. D.; Bazykin, G. A.
NATURE COMMUNICATIONSIF15.7
2020-09-144OAAIStolyarova, A. V.; Nabieva, E.; Ptushenko, V. V.; Favorov, A. V.; Popova, A. V.; Neverov, A. D.; Bazykin, G. A.ShareSaveHPV E2, E4, E5 drive alternative carcinogenic pathways in HPV positive cancersONCOGENE2020-08-2674OAAIRen, Shuling; Gaykalova, Daria A.; Guo, Theresa; Favorov, Alexander, V; Fertig, Elana J.; Tamayo, Pablo; Callejas-Valera, Juan Luis; Allevato, Mike; Gilardi, Mara; Santos, Jessica; Fukusumi, Takahito; Sakai, Akihiro; Ando, Mizuo; Sadat, Sayed; Liu, Chao; Xu, Guorong; Fisch, Kathleen M.; Wang, Zhiyong; Molinolo, Alfredo A.; Gutkind, J. Silvio; Ideker, Trey; Koch, Wayne M.; Califano, Joseph A.
ONCOGENEIF7.3
2020-08-2674OAAIRen, Shuling; Gaykalova, Daria A.; Guo, Theresa; Favorov, Alexander, V; Fertig, Elana J.; Tamayo, Pablo; Callejas-Valera, Juan Luis; Allevato, Mike; Gilardi, Mara; Santos, Jessica; Fukusumi, Takahito; Sakai, Akihiro; Ando, Mizuo; Sadat, Sayed; Liu, Chao; Xu, Guorong; Fisch, Kathleen M.; Wang, Zhiyong; Molinolo, Alfredo A.; Gutkind, J. Silvio; Ideker, Trey; Koch, Wayne M.; Califano, Joseph A.ShareSaveFunctional annotation of human long noncoding RNAs via molecular phenotypingGENOME RESEARCH2020-07-2796OAAIRamilowski, Jordan A.; Yip, Chi Wai; Agrawal, Saumya; Chang, Jen-Chien; Ciani, Yari; Kulakovskiy, Ivan V.; Mendez, Mickael; Ooi, Jasmine Li Ching; Ouyang, John F.; Parkinson, Nick; Petri, Andreas; Roos, Leonie; Severin, Jessica; Yasuzawa, Kayoko; Abugessaisa, Imad; Akalin, Altuna; Antonov, Ivan V.; Arner, Erik; Bonetti, Alessandro; Bono, Hidemasa; Borsari, Beatrice; Brombacher, Frank; Cameron, Chris J. F.; Cannistraci, Carlo Vittorio; Cardenas, Ryan; Cardon, Melissa; Chang, Howard; Dostie, Josee; Ducoli, Luca; Favorov, Alexander; Fort, Alexandre; Garrido, Diego; Gil, Noa; Gimenez, Juliette; Guler, Reto; Handoko, Lusy; Harshbarger, Jayson; Hasegawa, Akira; Hasegawa, Yuki; Hashimoto, Kosuke; Hayatsu, Norihito; Heutink, Peter; Hirose, Tetsuro; Imada, Eddie L.; Itoh, Masayoshi; Kaczkowski, Bogumil; Kanhere, Aditi; Kawabata, Emily; Kawaji, Hideya; Kawashima, Tsugumi; Kelly, S. Thomas; Kojima, Miki; Kondo, Naoto; Koseki, Haruhiko; Kouno, Tsukasa; Kratz, Anton; Kurowska-Stolarska, Mariola; Kwon, Andrew Tae Jun; Leek, Jeffrey; Lennartsson, Andreas; Lizio, Marina; Lopez-Redondo, Fernando; Luginbuhl, Joachim; Maeda, Shiori; Makeev, Vsevolod J.; Marchionni, Luigi; Medvedeva, Yulia A.; Minoda, Aki; Mueller, Ferenc; Munoz-Aguirre, Manuel; Murata, Mitsuyoshi; Nishiyori, Hiromi; Nitta, Kazuhiro R.; Noguchi, Shuhei; Noro, Yukihiko; Nurtdinov, Ramil; Okazaki, Yasushi; Orlando, Valerio; Paquette, Denis; Parr, Callum J. C.; Rackham, Owen J. L.; Rizzu, Patrizia; Martinez, Diego Fernando Sanchez; Sandelin, Albin; Sanjana, Pillay; Semple, Colin A. M.; Shibayama, Youtaro; Sivaraman, Divya M.; Suzuki, Takahiro; Szumowski, Suzannah C.; Tagami, Michihira; Taylor, Martin S.; Terao, Chikashi; Thodberg, Malte; Thongjuea, Supat; Tripathi, Vidisha; Ulitsky, Igor; Verardo, Roberto; Vorontsov, Ilya E.; Yamamoto, Chinatsu; Young, Robert S.; Baillie, J. Kenneth; Forrest, Alistair R. R.; Guigo, Roderic; Hoffman, Michael M.; Hon, Chung Chau; Kasukawa, Takeya; Kauppinen, Sakari; Kere, Juha; Lenhard, Boris; Schneider, Claudio; Suzuki, Harukazu; Yagi, Ken; de Hoon, Michiel J. L.; Shin, Jay W.; Carninci, Piero
GENOME RESEARCHIF5.5
2020-07-2796OAAIRamilowski, Jordan A.; Yip, Chi Wai; Agrawal, Saumya; Chang, Jen-Chien; Ciani, Yari; Kulakovskiy, Ivan V.; Mendez, Mickael; Ooi, Jasmine Li Ching; Ouyang, John F.; Parkinson, Nick; Petri, Andreas; Roos, Leonie; Severin, Jessica; Yasuzawa, Kayoko; Abugessaisa, Imad; Akalin, Altuna; Antonov, Ivan V.; Arner, Erik; Bonetti, Alessandro; Bono, Hidemasa; Borsari, Beatrice; Brombacher, Frank; Cameron, Chris J. F.; Cannistraci, Carlo Vittorio; Cardenas, Ryan; Cardon, Melissa; Chang, Howard; Dostie, Josee; Ducoli, Luca; Favorov, Alexander; Fort, Alexandre; Garrido, Diego; Gil, Noa; Gimenez, Juliette; Guler, Reto; Handoko, Lusy; Harshbarger, Jayson; Hasegawa, Akira; Hasegawa, Yuki; Hashimoto, Kosuke; Hayatsu, Norihito; Heutink, Peter; Hirose, Tetsuro; Imada, Eddie L.; Itoh, Masayoshi; Kaczkowski, Bogumil; Kanhere, Aditi; Kawabata, Emily; Kawaji, Hideya; Kawashima, Tsugumi; Kelly, S. Thomas; Kojima, Miki; Kondo, Naoto; Koseki, Haruhiko; Kouno, Tsukasa; Kratz, Anton; Kurowska-Stolarska, Mariola; Kwon, Andrew Tae Jun; Leek, Jeffrey; Lennartsson, Andreas; Lizio, Marina; Lopez-Redondo, Fernando; Luginbuhl, Joachim; Maeda, Shiori; Makeev, Vsevolod J.; Marchionni, Luigi; Medvedeva, Yulia A.; Minoda, Aki; Mueller, Ferenc; Munoz-Aguirre, Manuel; Murata, Mitsuyoshi; Nishiyori, Hiromi; Nitta, Kazuhiro R.; Noguchi, Shuhei; Noro, Yukihiko; Nurtdinov, Ramil; Okazaki, Yasushi; Orlando, Valerio; Paquette, Denis; Parr, Callum J. C.; Rackham, Owen J. L.; Rizzu, Patrizia; Martinez, Diego Fernando Sanchez; Sandelin, Albin; Sanjana, Pillay; Semple, Colin A. M.; Shibayama, Youtaro; Sivaraman, Divya M.; Suzuki, Takahiro; Szumowski, Suzannah C.; Tagami, Michihira; Taylor, Martin S.; Terao, Chikashi; Thodberg, Malte; Thongjuea, Supat; Tripathi, Vidisha; Ulitsky, Igor; Verardo, Roberto; Vorontsov, Ilya E.; Yamamoto, Chinatsu; Young, Robert S.; Baillie, J. Kenneth; Forrest, Alistair R. R.; Guigo, Roderic; Hoffman, Michael M.; Hon, Chung Chau; Kasukawa, Takeya; Kauppinen, Sakari; Kere, Juha; Lenhard, Boris; Schneider, Claudio; Suzuki, Harukazu; Yagi, Ken; de Hoon, Michiel J. L.; Shin, Jay W.; Carninci, PieroShareSaveMatrix factorization and transfer learning uncover regulatory biology across multiple single-cell ATAC-seq data setsNUCLEIC ACIDS RESEARCH2020-05-114OAAIErbe, Rossin; Kessler, Michael D.; Favorov, Alexander, V; Easwaran, Hariharan; Gaykalova, Daria A.; Fertig, Elana J.
NUCLEIC ACIDS RESEARCHIF13.1
2020-05-114OAAIErbe, Rossin; Kessler, Michael D.; Favorov, Alexander, V; Easwaran, Hariharan; Gaykalova, Daria A.; Fertig, Elana J.ShareSaveRecounting the FANTOM CAGE-Associated TranscriptomeGENOME RESEARCH2020-02-2016OAAIImada, Eddie Luidy; Sanchez, Diego Fernando; Collado-Torres, Leonardo; Wilks, Christopher; Matam, Tejasvi; Dinalankara, Wikum; Stupnikov, Aleksey; Lobo-Pereira, Francisco; Yip, Chi-Wai; Yasuzawa, Kayoko; Kondo, Naoto; Itoh, Masayoshi; Suzuki, Harukazu; Kasukawa, Takeya; Hon, Chung-Chau; Hoon, Michiel J. L. de; Shin, Jay W.; Carninci, Piero; Jaffe, Andrew E.; Leek, Jeffrey T.; Favorov, Alexander; Franco, Gloria R.; Langmead, Ben; Marchionni, Luigi
GENOME RESEARCHIF5.5
2020-02-2016OAAIImada, Eddie Luidy; Sanchez, Diego Fernando; Collado-Torres, Leonardo; Wilks, Christopher; Matam, Tejasvi; Dinalankara, Wikum; Stupnikov, Aleksey; Lobo-Pereira, Francisco; Yip, Chi-Wai; Yasuzawa, Kayoko; Kondo, Naoto; Itoh, Masayoshi; Suzuki, Harukazu; Kasukawa, Takeya; Hon, Chung-Chau; Hoon, Michiel J. L. de; Shin, Jay W.; Carninci, Piero; Jaffe, Andrew E.; Leek, Jeffrey T.; Favorov, Alexander; Franco, Gloria R.; Langmead, Ben; Marchionni, LuigiShareSaveResearch Directions
No research directions