Mingfu Shao - Publications, H-index & Citations

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Mingfu Shao

pennsylvania commonwealth system of higher education (pcshe)

14H-index

82Paper Count

781Citation Count

Published Papers 10

Publication Date

Accurate detection of tandem repeats from error-prone sequences with EquiRep

GENOME RESEARCH

IF5.5

2025-12-01

PREAI

Song, Zhezheng; Zahin, Tasfia; Li, Xiang; Shao, Mingfu

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Efficient seeding for error-prone sequences with SubseqHash2

BIOINFORMATICS

IF5.4

2025-08-01

OAAI

Li, Xiang; Chen, Ke; Shao, Mingfu

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Transcriptome assembly at single-cell resolution with Beaver

BIOINFORMATICS

IF5.4

2025-07-01

OAAI

Shi, Qian; Zhang, Qimin; Shao, Mingfu

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Accurate assembly of circular RNAs with TERRACE

GENOME RESEARCH

IF5.5

2024-07-26

OAAI

Zahin, Tasfia; Shi, Qian; Zang, Xiaofei Carl; Shao, Mingfu

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Accurate assembly of multi-end RNA-seq data with Scallop2

NATURE COMPUTATIONAL SCIENCE

IF18.3

2022-03-28

OAAI

Zhang, Qimin; Shi, Qian; Shao, Mingfu

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Quantifying the benefit offered by transcript assembly with Scallop-LR on single-molecule long reads

GENOME BIOLOGY

IF9.4

2019-12-18

OAAI

Tung, Laura H.; Shao, Mingfu; Kingsford, Carl

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Theory and A Heuristic for the Minimum Path Flow Decomposition Problem

IEEE-ACM TRANSACTIONS ON COMPUTATIONAL BIOLOGY AND BIOINFORMATICS

IF3.4

2019-03-01

OAAI

Shao, Mingfu; Kingsford, Carl

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SQUID: transcriptomic structural variation detection from RNA-seq

GENOME BIOLOGY

IF9.4

2018-04-12

OAAI

Ma, Cong; Shao, Mingfu; Kingsford, Carl

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Accurate assembly of transcripts through phase-preserving graph decomposition

NATURE BIOTECHNOLOGY

IF41.7

2017-11-13

111

OAAI

Shao, Mingfu; Kingsford, Carl

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A maximum-likelihood approach for building cell-type trees by lifting

BMC GENOMICS

IF3.7

2016-01-11

OAAI

Nair, Nishanth Ulhas; Hunter, Laura; Shao, Mingfu; Grnarova, Paulina; Lin, Yu; Bucher, Philipp; Moret, Bernard M. E.

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Research Directions