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SaveNF2 loss malignantly transforms human pancreatic acinar cells and enhances cell fitness under environmental stress
Xu, Yi; Nipper, Michael H.; Dominguez, Angel A.; He, Chenhui; Sharkey, Francis E.; Khan, Sajid; Xu, Han; Zhou, Daohong; Zheng, Lei; Luan, Yu; Liu, Jun; Wang, Pei Share Save Share Save SINGLE-NUCLEUS CO-PROFILING OF TRANSCRIPTOME, HISTONE MODIFICATIONS, AND CHROMATIN ACCESSIBILITY REVEALS DYNAMIC EVOLUTION OF RECURRENT GLIOBLASTOMAYoungblood, Mark; Yu, Shaojun; Ma, Yoshii; Habashy, Karl; Gould, Andrew; Chen, Li; Hou, Ye; Luan, Yu; Fu, Yihao; Sonabend, Adam; Yue, Feng Share Save CRISPR screen of venetoclax response-associated genes identifies transcription factor ZNF740 as a key functional regulatorZhang, Lixia; Zhou, Xinyue; Aryal, Sajesan; Veasey, Virginia; Zhang, Pengcheng; Li, Fu Jun; Luan, Yu; Bhatia, Ravi; Zhou, Yang; Lu, Rui Share Save Spatial 3D genome organization reveals intratumor heterogeneity in primary glioblastoma samplesWang, Qixuan; Wang, Juan; Mathur, Radhika; Youngblood, Mark W.; Jin, Qiushi; Hou, Ye; Stasiak, Lena A.; Luan, Yu; Costello, Joseph F.; Yue, Feng Share Save scENCORE: leveraging single-cell epigenetic data to predict chromatin conformation using graph embeddingDuan, Ziheng; Xu, Siwei; Sai Srinivasan, Shushrruth; Hwang, Ahyeon; Lee, Che Yu; Yue, Feng; Gerstein, Mark; Luan, Yu; Girgenti, Matthew; Zhang, Jing Share Save Enhancer Coamplification and Hijacking Promote Oncogene Expression in LiposarcomaLiu, Tingting; Wang, Juan; Yang, Hongbo; Jin, Qiushi; Wang, Xiaotao; Fu, Yihao; Luan, Yu; Wang, Qixuan; Youngblood, Mark W.; Lu, Xinyan; Casadei, Lucia; Pollock, Raphael; Yue, Feng Share Save Share Save Enhancer selection dictates gene expression responses in remote organs during tissue regenerationSun, Fei; Ou, Jianhong; Shoffner, Adam R.; Luan, Yu; Yang, Hongbo; Song, Lingyun; Safi, Alexias; Cao, Jingli; Yue, Feng; Crawford, Gregory E.; Poss, Kenneth D. Share Save Pan-Cancer Analysis and Validation Reveals that D-Dimer-Related Genes are Prognostic and Downregulate CD8+ T Cells via TGF-Beta Signaling in Gastric CancerGuan, Yiming; Xu, Bing; Sui, Yi; Chen, Zhezhou; Luan, Yu; Jiang, Yan; Wei, Lijuan; Long, Wenjing; Zhao, Sansan; Han, Lei; Xu, Dakang; Lin, Lin; Guan, Qi Share Save Noncoding genetic variation in GATA3 increases acute lymphoblastic leukemia risk through local and global changes in chromatin conformationYang, Hongbo; Zhang, Hui; Luan, Yu; Liu, Tingting; Yang, Wentao; Roberts, Kathryn G.; Qian, Mao-xiang; Zhang, Bo; Yang, Wenjian; Perez-Andreu, Virginia; Xu, Jie; Iyyanki, Sriranga; Kuang, Da; Stasiak, Lena A.; Reshmi, Shalini C.; Gastier-Foster, Julie; Smith, Colton; Pui, Ching-Hon; Evans, William E.; Hunger, Stephen P.; Platanias, Leonidas C.; Relling, Mary, V; Mullighan, Charles G.; Loh, Mignon L.; Yue, Feng; Yang, Jun J. Share Save Subtype-associated epigenomic landscape and 3D genome structure in bladder cancerIyyanki, Tejaswi; Zhang, Baozhen; Wang, Qixuan; Hou, Ye; Jin, Qiushi; Xu, Jie; Yang, Hongbo; Liu, Tingting; Wang, Xiaotao; Song, Fan; Luan, Yu; Yamashita, Hironobu; Chien, Ruby; Lyu, Huijue; Zhang, Lijun; Wang, Lu; Warrick, Joshua; Raman, Jay D.; Meeks, Joshua J.; DeGraff, David J.; Yue, Feng Share Save A compendium and comparative epigenomics analysis of cis-regulatory elements in the pig genomeZhao, Yunxia; Hou, Ye; Xu, Yueyuan; Luan, Yu; Zhou, Huanhuan; Qi, Xiaolong; Hu, Mingyang; Wang, Daoyuan; Wang, Zhangxu; Fu, Yuhua; Li, Jingjin; Zhang, Saixian; Chen, Jianhai; Han, Jianlin; Li, Xinyun; Zhao, Shuhong Share Save Share Save LncRNAs are regulated by chromatin states and affect the skeletal muscle cell differentiationQi, Xiaolong; Hu, Mingyang; Xiang, Yue; Wang, Daoyuan; Xu, Yueyuan; Hou, Ye; Zhou, Huanhuan; Luan, Yu; Wang, Zhangxu; Zhang, Weiya; Li, Xinyun; Zhao, Shuhong; Zhao, Yunxia Share Save Chromatin accessibility is associated with the changed expression of miRNAs that target members of the Hippo pathway during myoblast differentiationZhou, Huanhuan; Xiang, Yue; Hu, Mingyang; Xu, Yueyuan; Hou, Ye; Qi, Xiaolong; Fu, Liangliang; Luan, Yu; Wang, Zhangxu; Li, Xinyun; Zhao, Yunxia; Zhao, Shuhong Share Save Quantification of allelic differential expression using a simple Fluorescence primer PCR-RFLP-based methodZhao, Changzhi; Xie, Shengsong; Wu, Hui; Luan, Yu; Hu, Suqin; Ni, Juan; Lin, Ruiyi; Zhao, Shuhong; Zhang, Dingxiao; Li, Xinyun Share Save Proteomic analysis indicates that mitochondrial energy metabolism in skeletal muscle tissue is negatively correlated with feed efficiency in pigsFu, Liangliang; Xu, Yueyuan; Hou, Ye; Qi, Xiaolong; Zhou, Lian; Liu, Huiying; Luan, Yu; Jing, Lu; Miao, Yuanxin; Zhao, Shuhong; Liu, Huazhen; Li, Xinyun Share Save 
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