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Shannon Takala‐Harrison

University System of Maryland

31H-index
115Paper Count
5.5KCitation Count
Published Papers 48
Publication Date
hmmibd-rs: an enhanced hmmIBD implementation for parallelizable identity-by-descent detection from large-scale Plasmodium genomic data
err2026-02-09
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PREAI
errGuo, Bing; Schaffner, Stephen F.; Taylor, Aimee R.; O'Connor, Timothy D.; Takala-Harrison, Shannon
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Extreme Genetic Diversity and Signatures of Balancing Selection in Plasmodium vivax Blood-Stage Antigens
err2025-11-01
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errOAAI
errBareng, Alison Paolo N.; Naung, Myo T.; Martin, Eli; Mehra, Somya; Munro, Jacob E.; Harrison, Shannon Takala; Barry, Alyssa E.
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Controlled human malaria infection with NF54 and 7G8 strains elicit differential antibody responses to Plasmodium falciparum peptides
err2025-09-19
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errOAAI
errDeAnna J. Friedman-Klabanoff; Travis L. Jensen; Kirsten E. Lyke; Matthew B. Laurens; Joana C. Silva; Emily M. Stucke; Amed Ouattara; Olukemi O. Ifeonu; Theresa Hodges; Kara A. Moser; Casey E. Gelber; Johannes B. Goll; Stephen L. Hoffman; Jigar J. Patel; Richard S. Pinapati; John C. Tan; Gregory A. Deye; Shannon Takala-Harrison; Mark A. Travassos; Andrea A. Berry
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Vaccine-Induced Antibodies to a C-Terminal Plasmodium falciparum Circumsporozoite Protein Epitope Associated With Protection Against Malaria Challenge
err2025-08-01
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PREAI
errFriedman-Klabanoff, DeAnna J.; Jensen, Travis L.; Gelber, Casey E.; Pinapati, Richard S.; Tan, John C.; Deye, Gregory A.; Regules, Jason A.; Bergmann-Leitner, Elke S.; Laurens, Matthew B.; Travassos, Mark A.; Goll, Johannes B.; Takala-Harrison, Shannon; Berry, Andrea A.
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Diamonds in the rif: Alignment-free comparative genomics analysis reveals strain-transcendent Plasmodium falciparum antigens amidst extensive genetic diversity
err2025-04-01
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errOAAI
errLawton, Jonathan G.; Zhou, Albert E.; Stucke, Emily M.; Takala-Harrison, Shannon; Silva, Joana C.; Travassos, Mark A.
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Whole-genome sieve analysis: Identification of protective malaria antigens by leveraging allele-specific vaccine efficacy
errVACCINE
IF3.5
err2025-03-01
err0
PREAI
errScalsky, Ryan; Dwivedi, Ankit; Stabler, Thomas C.; Mbambo, Gillian; Ouattara, Amed; Lyke, Kirsten E.; Takala-Harrison, Shannon; Silva, Joana C.
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Plasmodium vivax antigen candidate prediction improves with the addition of Plasmodium falciparum data
err2024-11-13
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errOAAI
errChou, Renee Ti; Ouattara, Amed; Takala-Harrison, Shannon; Cummings, Michael P.
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Immune gene expression changes more during a malaria transmission season than between consecutive seasons
err2024-10-03
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errOAAI
errTebben, Kieran; Yirampo, Salif; Coulibaly, Drissa; Kone, Abdoulaye K.; Laurens, Matthew B.; Stucke, Emily M.; Dembele, Ahmadou; Tolo, Youssouf; Traore, Karim; Niangaly, Amadou; Berry, Andrea A.; Kouriba, Bourema; Plowe, Christopher V.; Doumbo, Ogobara K.; Lyke, Kirsten E.; Takala-Harrison, Shannon; Thera, Mahamadou A.; Travassos, Mark A.; Serre, David
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Children with hemoglobin C or S trait have low serologic responses to a subset of malaria variant surface antigens
err2024-10-01
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errOAAI
errBailey, Rachel D.; Lawton, Jonathan G.; Niangaly, Amadou; Stucke, Emily M.; Bailey, Jason A.; Berry, Andrea A.; Ouattara, Amed; Coulibaly, Drissa; Lyke, Kirsten E.; Laurens, Matthew B.; Zhou, Albert E.; Pablo, Jozelyn; Jasinskas, Algis; Nakajima, Rie; Adams, Matthew; Takala-Harrison, Shannon; Kouriba, Bourema; Kone, Abdoulaye K.; Guindo, Aldiouma; Rowe, J. Alexandra; Diallo, Dapa A.; Doumbo, Ogobara K.; Felgner, Philip L.; Plowe, Christopher V.; Thera, Mahamadou A.; Travassos, Mark A.
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Positive-unlabeled learning identifies vaccine candidate antigens in the malaria parasite Plasmodium falciparum
err2024-04-27
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errOAAI
errChou, Renee Ti; Ouattara, Amed; Adams, Matthew; Berry, Andrea A.; Takala-Harrison, Shannon; Cummings, Michael P.
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Strong positive selection biases identity-by-descent-based inferences of recent demography and population structure in Plasmodium falciparum
err2024-03-20
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errOAAI
errGuo, Bing; Borda, Victor; Laboulaye, Roland; Spring, Michele D.; Wojnarski, Mariusz; Vesely, Brian A.; Silva, Joana C.; Waters, Norman C.; O'Connor, Timothy D.; Takala-Harrison, Shannon
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Gene expression analyses reveal differences in children's response to malaria according to their age
err2024-03-06
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errOAAI
errTebben, Kieran; Yirampo, Salif; Coulibaly, Drissa; Kone, Abdoulaye K.; Laurens, Matthew B.; Stucke, Emily M.; Dembele, Ahmadou; Tolo, Youssouf; Traore, Karim; Niangaly, Amadou; Berry, Andrea A.; Kouriba, Bourema; Plowe, Christopher V.; Doumbo, Ogobara K.; Lyke, Kirsten E.; Takala-Harrison, Shannon; Thera, Mahamadou A.; Travassos, Mark A.; Serre, David
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Natural immunity to malaria preferentially targets the endothelial protein C receptor-binding regions of PfEMP1s
errMSPHERE
IF3.1
err2023-10-24
err3
errOAAI
errTewey, Madison A.; Coulibaly, Drissa; Lawton, Jonathan G.; Stucke, Emily M.; Zhou, Albert E.; Berry, Andrea A.; Bailey, Jason A.; Pike, Andrew; Dara, Antoine; Ouattara, Amed; Lyke, Kirsten E.; Ifeonu, Olukemi; Laurens, Matthew B.; Adams, Matthew; Takala-Harrison, Shannon; Niangaly, Amadou; Kouriba, Bourema; Kone, Abdoulaye K.; Rowe, J. Alexandra; Doumbo, Ogobara K.; Patel, Jigar J.; Tan, John C.; Felgner, Philip L.; Plowe, Christopher V.; Thera, Mahamadou A.; Travassos, Mark A.
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Malian children infected with Plasmodium ovale and Plasmodium falciparum display very similar gene expression profiles
err2023-01-25
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errOAAI
errTebben, Kieran; Yirampo, Salif; Coulibaly, Drissa; Kone, Abdoulaye; Laurens, Matthew A.; Stucke, Emily; Dembele, Ahmadou V.; Tolo, Youssouf K.; Traore, Karim E.; Niangaly, Amadou; Berry, Andrea A.; Kouriba, Bourema A.; Plowe, Christopher; Doumbo, Ogobara; Lyke, Kirsten O.; Takala-Harrison, Shannon; Thera, Mahamadou O.; Travassos, Mark; Serre, David O.
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An In Silico Analysis of Malaria Pre-Erythrocytic-Stage Antigens Interpreting Worldwide Genetic Data to Suggest Vaccine Candidate Variants and Epitopes
err2022-05-25
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errOAAI
errOuattara, Amed; Dwivedi, Ankit; Adams, Matthew; Niangaly, Amadou; Laurens, Matthew B.; Nyunt, Myaing M.; Plowe, Christopher, V; Djimde, Abdoulaye; Takala-Harrison, Shannon; Silva, Joana C.
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Successful Profiling of Plasmodium falciparum var Gene Expression in Clinical Samples via a Custom Capture Array
err2021-12-21
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errOAAI
errStucke, Emily M.; Dara, Antoine; Dwivedi, Ankit; Hodges, Theresa K.; Ott, Sandra; Coulibaly, Drissa; Kone, Abdoulaye K.; Traore, Karim; Guindo, Boureima; Tangara, Bourama M.; Niangaly, Amadou; Daou, Modibo; Diarra, Issa; Tolo, Youssouf; Sissoko, Mody; Tallon, Luke J.; Sadzewicz, Lisa; Zhou, Albert E.; Laurens, Matthew B.; Ouattara, Amed; Kouriba, Bourema; Doumbo, Ogobara K.; Takala-Harrison, Shannon; Serre, David; Plowe, Christopher, V; Thera, Mahamadou A.; Travassos, Mark A.; Silva, Joana C.
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Immunoprofiles associated with controlled human malaria infection and naturally acquired immunity identify a shared IgA pre-erythrocytic immunoproteome
err2021-09-13
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errOAAI
errBerry, Andrea A.; Obiero, Joshua M.; Travassos, Mark A.; Ouattara, Amed; Coulibaly, Drissa; Adams, Matthew; de Assis, Rafael Ramiro; Jain, Aarti; Taghavian, Omid; Sy, Andrew; Nakajima, Rie; Jasinskas, Algis; Laurens, Matthew B.; Takala-Harrison, Shannon; Kouriba, Bourema; Kone, Abdoulaye K.; Doumbo, Ogobara K.; Sim, B. Kim Lee; Hoffman, Stephen L.; Plowe, Christopher V.; Thera, Mahamadou A.; Felgner, Philip L.; Lyke, Kirsten E.
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Integration of population and functional genomics to understand mechanisms of artemisinin resistance in Plasmodium falciparum
err2021-08-01
err11
errOAAI
errOberstaller, Jenna; Zoungrana, Linda; Bannerman, Carl D.; Jahangiri, Samira; Dwivedi, Ankit; Silva, Joana C.; Adams, John H.; Takala-Harrison, Shannon
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Malian adults maintain serologic responses to virulent PfEMP1s amid seasonal patterns of fluctuation
err2021-07-13
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errOAAI
errVentimiglia, Noah T.; Stucke, Emily M.; Coulibaly, Drissa; Berry, Andrea A.; Lyke, Kirsten E.; Laurens, Matthew B.; Bailey, Jason A.; Adams, Matthew; Niangaly, Amadou; Kone, Abdoulaye K.; Takala-Harrison, Shannon; Kouriba, Bourema; Doumbo, Ogobara K.; Felgner, Phillip L.; Plowe, Christopher V.; Thera, Mahamadou A.; Travassos, Mark A.
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Whole-genome analysis of Malawian Plasmodium falciparum isolates identifies possible targets of allele-specific immunity to clinical malaria
err2021-05-25
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errOAAI
errShah, Zalak; Naung, Myo T.; Moser, Kara A.; Adams, Matthew; Buchwald, Andrea G.; Dwivedi, Ankit; Ouattara, Amed; Seydel, Karl B.; Mathanga, Don P.; Barry, Alyssa E.; Serre, David; Laufer, Miriam K.; Silva, Joana C.; Takala-Harrison, Shannon
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