Brian T. Lee - Publications, H-index & Citations

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Brian T. Lee

University of California System

21H-index

31Paper Count

9.0KCitation Count

Published Papers 21

Publication Date

The UCSC Genome Browser database: 2024 update

NUCLEIC ACIDS RESEARCH

IF13.1

2023-11-11

OAAI

Raney, Brian J.; Barber, Galt P.; Benet-Pages, Anna; Casper, Jonathan; Clawson, Hiram; Cline, Melissa S.; Diekhans, Mark; Fischer, Clayton; Gonzalez, Jairo Navarro; Hickey, Glenn; Hinrichs, Angie S.; Kuhn, Robert M.; Lee, Brian T.; Lee, Christopher M.; Le Mercier, Phillipe; Miga, KarenH; Nassar, Luis R.; Nejad, Parisa; Paten, Benedict; Perez, Gerardo; Schmelter, Daniel; Speir, Matthew L.; Wick, Brittney D.; Zweig, Ann S.; Haussler, David; Kent, W. James; Haeussler, Maximilian

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GenArk: towards a million UCSC genome browsers

GENOME BIOLOGY

IF9.4

2023-10-02

OAAI

Clawson, Hiram; Lee, Brian T.; Raney, Brian J.; Barber, Galt P.; Casper, Jonathan; Diekhans, Mark; Fischer, Clay; Gonzalez, Jairo Navarro; Hinrichs, Angie S.; Lee, Christopher M.; Nassar, Luis R.; Perez, Gerardo; Wick, Brittney; Schmelter, Daniel; Speir, Matthew L.; Armstrong, Joel; Zweig, Ann S.; Kuhn, Robert M.; Kirilenko, Bogdan M.; Hiller, Michael; Haussler, David; Kent, W. James; Haeussler, Maximilian

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The UCSC Genome Browser database: 2023 update

NUCLEIC ACIDS RESEARCH

IF13.1

2022-11-24

202

OAAI

Nassar, Luis R.; Barber, Galt P.; Benet-Pages, Anna; Casper, Jonathan; Clawson, Hiram; Diekhans, Mark; Fischer, Clay; Gonzalez, Jairo Navarro; Hinrichs, Angie S.; Lee, Brian T.; Lee, Christopher M.; Muthuraman, Pranav; Nguy, Beagan; Pereira, Tiana; Nejad, Parisa; Perez, Gerardo; Raney, Brian J.; Schmelter, Daniel; Speir, Matthew L.; Wick, Brittney D.; Zweig, Ann S.; Haussler, David; Kuhn, Robert M.; Haeussler, Maximilian; Kent, W. James

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The dynseq browser track shows context-specific features at nucleotide resolution

NATURE GENETICS

IF31.8

2022-10-14

OAAI

Nair, Surag; Barrett, Arjun; Li, Daofeng; Raney, Brian J.; Lee, Brian T.; Kerpedjiev, Peter; Ramalingam, Vivekanandan; Pampari, Anusri; Lekschas, Fritz; Wang, Ting; Haeussler, Maximilian; Kundaje, Anshul

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Variant interpretation: UCSC Genome Browser Recommended Track Sets

HUMAN MUTATION

IF3.7

2022-02-07

OAAI

Benet-Pages, Anna; Rosenbloom, Kate R.; Nassar, Luis R.; Lee, Christopher M.; Raney, Brian J.; Clawson, Hiram; Schmelter, Daniel; Casper, Jonathan; Gonzalez, Jairo Navarro; Perez, Gerardo; Lee, Brian T.; Zweig, Ann S.; Kent, W. James; Haeussler, Maximillian; Kuhn, Robert M.

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The UCSC Genome Browser database: 2022 update

NUCLEIC ACIDS RESEARCH

IF13.1

2021-10-28

162

OAAI

Lee, Brian T.; Barber, Galt P.; Benet-Pages, Anna; Casper, Jonathan; Clawson, Hiram; Diekhans, Mark; Fischer, Clay; Gonzalez, Jairo Navarro; Hinrichs, Angie S.; Lee, Christopher M.; Muthuraman, Pranav; Nassar, Luis R.; Nguy, Beagan; Pereira, Tiana; Perez, Gerardo; Raney, Brian J.; Rosenbloom, Kate R.; Schmelter, Daniel; Speir, Matthew L.; Wick, Brittney D.; Zweig, Ann S.; Haussler, David; Kuhn, Robert M.; Haeussler, Maximilian; Kent, W. James

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The UCSC Genome Browser database: 2021 update

NUCLEIC ACIDS RESEARCH

IF13.1

2020-11-22

321

OAAI

Gonzalez, Jairo Navarro; Zweig, Ann S.; Speir, Matthew L.; Schmelter, Daniel; Rosenbloom, Kate R.; Raney, Brian J.; Powell, Conner C.; Nassar, Luis R.; Maulding, Nathan D.; Lee, Christopher M.; Lee, Brian T.; Hinrichs, Angie S.; Fyfe, Alastair C.; Fernandes, Jason D.; Diekhans, Mark; Clawson, Hiram; Casper, Jonathan; Benet-Pages, Anna; Barber, Galt P.; Haussler, David; Kuhn, Robert M.; Haeussler, Maximilian; Kent, W. James

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The UCSC SARS-CoV-2 Genome Browser

NATURE GENETICS

IF31.8

2020-09-09

OAAI

Fernandes, Jason D.; Hinrichs, Angie S.; Clawson, Hiram; Gonzalez, Jairo Navarro; Lee, Brian T.; Nassar, Luis R.; Raney, Brian J.; Rosenbloom, Kate R.; Nerli, Santrupti; Rao, Arjun A.; Schmelter, Daniel; Fyfe, Alastair; Maulding, Nathan; Zweig, Ann S.; Lowe, Todd M.; Ares, Manuel Jr Jr; Corbet-Detig, Russ; Kent, W. James; Haussler, David; Haeussler, Maximilian

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UCSC Genome Browser enters 20th year

NUCLEIC ACIDS RESEARCH

IF13.1

2019-11-06

160

OAAI

Lee, Christopher M.; Barber, Galt P.; Casper, Jonathan; Clawson, Hiram; Diekhans, Mark; Gonzalez, Jairo Navarro; Hinrichs, Angie S.; Lee, Brian T.; Nassar, Luis R.; Powell, Conner C.; Raney, Brian J.; Rosenbloom, Kate R.; Schmelter, Daniel; Speir, Matthew L.; Zweig, Ann S.; Haussler, David; Haeussler, Maximilian; Kuhn, Robert M.; Kent, W. James

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The UCSC Genome Browser database: 2019 update

NUCLEIC ACIDS RESEARCH

IF13.1

2018-11-08

592

OAAI

Haeussler, Maximilian; Zweig, Ann S.; Tyner, Cath; Speir, Matthew L.; Rosenbloom, Kate R.; Raney, Brian J.; Lee, Christopher M.; Lee, Brian T.; Hinrichs, Angie S.; Gonzalez, Jairo Navarro; Gibson, David; Diekhans, Mark; Clawson, Hiram; Casper, Jonathan; Barber, Galt P.; Haussler, David; Kuhn, Robert M.; Kent, W. James

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The UCSC Genome Browser database: 2018 update

NUCLEIC ACIDS RESEARCH

IF13.1

2017-11-02

377

OAAI

Casper, Jonathan; Zweig, Ann S.; Villarreal, Chris; Tyner, Cath; Speir, Matthew L.; Rosenbloom, Kate R.; Raney, Brian J.; Lee, Christopher M.; Lee, Brian T.; Karolchik, Donna; Hinrichs, Angie S.; Haeussler, Maximilian; Guruvadoo, Luvina; Gonzalez, Jairo Navarro; Gibson, David; Fiddes, Ian T.; Eisenhart, Christopher; Diekhans, Mark; Clawson, Hiram; Barber, Galt P.; Armstrong, Joel; Haussler, David; Kuhn, Robert M.; Kent, W. James

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Principles of metadata organization at the ENCODE data coordination center

DATABASE-THE JOURNAL OF BIOLOGICAL DATABASES AND CURATION

IF3.6

2016-03-15

OAAI

Hong, Eurie L.; Sloan, Cricket A.; Chan, Esther T.; Davidson, Jean M.; Malladi, Venkat S.; Strattan, J. Seth; Hitz, Benjamin C.; Gabdank, Idan; Narayanan, Aditi K.; Ho, Marcus; Lee, Brian T.; Rowe, Laurence D.; Dreszer, Timothy R.; Roe, Greg R.; Podduturi, Nikhil R.; Tanaka, Forrest; Hilton, Jason A.; Cherry, J. Michael

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Integrative genomic analysis by interoperation of bioinformatics tools in GenomeSpace

NATURE METHODS

IF32.1

2016-01-18

OAAI

Qu, Kun; Garamszegi, Sara; Wu, Felix; Thorvaldsdottir, Helga; Liefeld, Ted; Ocana, Marco; Borges-Rivera, Diego; Pochet, Nathalie; Robinson, James T.; Demchak, Barry; Hull, Tim; Ben-Artzi, Gil; Blankenberg, Daniel; Barber, Galt P.; Lee, Brian T.; Kuhn, Robert M.; Nekrutenko, Anton; Segal, Eran; Ideker, Trey; Reich, Michael; Regev, Aviv; Chang, Howard Y.; Mesirov, Jill P.

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The UCSC Genome Browser database: 2017 update

NUCLEIC ACIDS RESEARCH

IF13.1

2016-01-01

289

OAAI

Tyner, Cath; Barber, Galt P.; Casper, Jonathan; Clawson, Hiram; Diekhans, Mark; Eisenhart, Christopher; Fischer, Clayton M.; Gibson, David; Gonzalez, Jairo Navarro; Guruvadoo, Luvina; Haeussler, Maximilian; Heitner, Steve; Hinrichs, Angie S.; Karolchik, Donna; Lee, Brian T.; Lee, Christopher M.; Nejad, Parisa; Raney, Brian J.; Rosenbloom, Kate R.; Speir, Matthew L.; Villarreal, Chris; Vivian, John; Zweig, Ann S.; Haussler, David; Kuhn, Robert M.; Kent, W. James

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The UCSC Genome Browser database: 2016 update

NUCLEIC ACIDS RESEARCH

IF13.1

2015-11-20

335

OAAI

Speir, Matthew L.; Zweig, Ann S.; Rosenbloom, Kate R.; Raney, Brian J.; Paten, Benedict; Nejad, Parisa; Lee, Brian T.; Learned, Katrina; Karolchik, Donna; Hinrichs, Angie S.; Heitner, Steve; Harte, Rachel A.; Haeussler, Maximilian; Guruvadoo, Luvina; Fujita, Pauline A.; Eisenhart, Christopher; Diekhans, Mark; Clawson, Hiram; Casper, Jonathan; Barber, Galt P.; Haussler, David; Kuhn, Robert M.; Kent, W. James

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ENCODE data at the ENCODE portal

NUCLEIC ACIDS RESEARCH

IF13.1

2015-11-02

389

OAAI

Sloan, Cricket A.; Chan, Esther T.; Davidson, Jean M.; Malladi, Venkat S.; Strattan, J. Seth; Hitz, Benjamin C.; Gabdank, Idan; Narayanan, Aditi K.; Ho, Marcus; Lee, Brian T.; Rowe, Laurence D.; Dreszer, Timothy R.; Roe, Greg; Podduturi, Nikhil R.; Tanaka, Forrest; Hong, Eurie L.; Cherry, J. Michael

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Ontology application and use at the ENCODE DCC

DATABASE-THE JOURNAL OF BIOLOGICAL DATABASES AND CURATION

IF3.6

2015-03-16

OAAI

Malladi, Venkat S.; Erickson, Drew T.; Podduturi, Nikhil R.; Rowe, Laurence D.; Chan, Esther T.; Davidson, Jean M.; Hitz, Benjamin C.; Ho, Marcus; Lee, Brian T.; Miyasato, Stuart; Roe, Gregory R.; Simison, Matt; Sloan, Cricket A.; Strattan, J. Seth; Tanaka, Forrest; Kent, W. James; Cherry, J. Michael; Hong, Eurie L.

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The UCSC Genome Browser database: 2015 update

NUCLEIC ACIDS RESEARCH

IF13.1

2014-11-26

821

OAAI

Rosenbloom, Kate R.; Armstrong, Joel; Barber, Galt P.; Casper, Jonathan; Clawson, Hiram; Diekhans, Mark; Dreszer, Timothy R.; Fujita, Pauline A.; Guruvadoo, Luvina; Haeussler, Maximilian; Harte, Rachel A.; Heitner, Steve; Hickey, Glenn; Hinrichs, Angie S.; Hubley, Robert; Karolchik, Donna; Learned, Katrina; Lee, Brian T.; Li, Chin H.; Miga, Karen H.; Nguyen, Ngan; Paten, Benedict; Raney, Brian J.; Smit, Arian F. A.; Speir, Matthew L.; Zweig, Ann S.; Haussler, David; Kuhn, Robert M.; Kent, W. James

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The UCSC Genome Browser database: 2014 update

NUCLEIC ACIDS RESEARCH

IF13.1

2013-11-21

620

OAAI

Karolchik, Donna; Barber, Galt P.; Casper, Jonathan; Clawson, Hiram; Cline, Melissa S.; Diekhans, Mark; Dreszer, Timothy R.; Fujita, Pauline A.; Guruvadoo, Luvina; Haeussler, Maximilian; Harte, Rachel A.; Heitner, Steve; Hinrichs, Angie S.; Learned, Katrina; Lee, Brian T.; Li, Chin H.; Raney, Brian J.; Rhead, Brooke; Rosenbloom, Kate R.; Sloan, Cricket A.; Speir, Matthew L.; Zweig, Ann S.; Haussler, David; Kuhn, Robert M.; Kent, W. James

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ENCODE Data in the UCSC Genome Browser: year 5 update

NUCLEIC ACIDS RESEARCH

IF13.1

2012-11-26

739

OAAI

Rosenbloom, Kate R.; Sloan, Cricket A.; Malladi, Venkat S.; Dreszer, Timothy R.; Learned, Katrina; Kirkup, Vanessa M.; Wong, Matthew C.; Maddren, Morgan; Fang, Ruihua; Heitner, Steven G.; Lee, Brian T.; Barber, Galt P.; Harte, Rachel A.; Diekhans, Mark; Long, Jeffrey C.; Wilder, Steven P.; Zweig, Ann S.; Karolchik, Donna; Kuhn, Robert M.; Haussler, David; Kent, W. James

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Research Directions