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J

Johnathan Cooper‐Knock

university of sheffield

40H-index
180Paper Count
7.4KCitation Count
Published Papers 79
Publication Date
Human body single-cell atlas of three-dimensional genome organization and DNA methylation
errScience
IF45.8
err2026-07-23
err0
PREAI
errJingtian Zhou; Yue Wu; Hanqing Liu; Wei Tian; Rosa G. Castanon; Anna Bartlett; Zuolong Zhang; Guocong Yao; Dengxiaoyu Shi; Ben Clock; Samantha Marcotte; Joseph R. Nery; Michelle Liem; Naomi Claffey; Lara Boggeman; Cesar Barragan; Rafael Arrojo e Drigo; Annika K. Weimer; Minyi Shi; Johnathan Cooper-Knock; Sai Zhang; Michael P. Snyder; Sebastian Preissl; Bing Ren; Carolyn O’Connor; Shengbo Chen; Chongyuan Luo; Jesse R. Dixon; Joseph R. Ecker
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Multi-omic analysis of deep learning-derived phenotypes links ophthalmic imaging to cardiovascular and neurological traits
err2026-06-16
err0
errOAAI
errThomas H. Julian; Haoran Dou; Jinming Duan; Jinghan Huang; Esther Yoo; David J. Green; Andrew Strange; Elham Alhathli; Matthew Sperrin; Pearse A. Keane; Emily Y. Chew; Bernard Keavney; Tomas W. Fitzgerald; Johnathan Cooper-Knock; Ewan Birney; Alejandro F. Frangi; Panagiotis I. Sergouniotis
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Large-scale exome analyses reveal new rare variant contributions in amyotrophic lateral sclerosis
err2026-03-31
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errOAAI
errPaul J. Hop; Maarten Kooyman; Brendan J. Kenna; Ramona A. J. Zwamborn; Kristel R. van Eijk; Yan Wang; Charlotte H. van Dijk; Erwin Bekema; Wouter van Rheenen; Paul Beele; Joke J. F. A. van Vugt; Ahmad Al Khleifat; Alfredo Iacoangeli; Johnathan Cooper-Knock; Bradley N. Smith; Simon Topp; Anneke J. van der Kooi; Vera Fominykh; Vivian Drory; Yossef Lerner; Yehuda Shovman; Dominic B. Rowe; Kelly L. Williams; Russell L. McLaughlin; Jessica Hurt; Yunfeng Huang; Chia-Yen Chen; Ellen Tsai; Heiko Runz; Eleonora Aronica; Ewout J. N. Groen; Michael A. van Es; R. Jeroen Pasterkamp; Sali M. K. Farhan; Fleur C. Garton; Allan F. McRae; Pamela A. McCombe; Robert D. Henderson; Dongsheng Fan; Lenka Šlachtová; Helle Høyer; Agnes L. Nishimura; Ruben J. Cauchi; Lev Brylev; Boris Rogelj; Blaž Koritnik; Janez Zidar; Teresa Salas; Jesus S. Mora Pardina; Marc Gotkine; Monica Povedano; Philippe Corcia; Patrick Vourc’h; Philippe Couratier; Markus Weber; Matthew C. Kiernan; Roger Pamphlett; Ian P. Blair; Mamede de Carvalho; Nazli A. Başak; Caroline Ingre; Peter M. Andersen; Lorne Zinman; Ekaterina Rogaeva; Ian R. MacKenzie; Nicolas Dupre; Guy A. Rouleau; Bryan J. Traynor; Nicola Ticozzi; Adriano Chiò; Vincenzo Silani; Orla Hardiman; Hemali Phatnani; Matthew B. Harms; Clifton L. Dalgard; Jonathan D. Glass; John E. Landers; Philip Van Damme; Karen E. Morrison; Pamela J. Shaw; Chris E. Shaw; Ammar Al-Chalabi; Leonard H. van den Berg; Kevin P. Kenna; Jan H. Veldink
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Paraspeckle condensation is controlled via TDP-43 polymerization and linked to neuroprotection
err2026-03-18
err0
errOAAI
errRachel E. Hodgson; Wan-Ping Huang; Ruaridh Lang; Vedanth Kumar; Haiyan An; Emil G. P. Stender; Zhaklin P. Chalakova; Mark D. Driver; Anna Sanchez Avila; Brittany C. S. Ellis; Emily Day; Jessica A. Rayment; Kyungmin Baeg; Andrew Strange; Tobias Moll; Gareth S. A. Wright; Joke J. F. A. van Vugt; Scott P. Allen; Nicolas Locker; Ianthe Pitout; Susan Fletcher; Patrick R. Onck; Olivier Duss; Johnathan Cooper-Knock; Tatyana A. Shelkovnikova
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Bi-allelic intermediate ATXN2 repeat expansions are associated with slow progressing, leg-onset familial ALS
err2026-02-01
err0
errOAAI
errDemaegd, Koen Cedric; Koole, Wouter; van Vugt, Joke J. F. A.; Dankbaar, Jan Willem; Hendrikse, Jeroen; Nazli Basak, A.; de Carvalho, Mamede; Corcia, Philippe; Codron, Philippe; Bernard, Emilien; Guissart, Claire; Couratier, Philippe; Povedano Panades, Monica; van Doorn, Pieter A.; Warrenburg, Bart P.; Cooper-Knock, Johnathan; Pasterkamp, R. Jeroen; van Rheenen, Wouter; van Damme, Philip; van den Berg, Leonard H.; Veldink, Jan Herman; van Es, Michael A.
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M102 activates both NRF2 and HSF1 transcription factor pathways and is neuroprotective in cell and animal models of amyotrophic lateral sclerosis
err2025-11-06
err0
errOAAI
errAmy F. Keerie; Raquel Rua Martins; Chloe F. Allen; Katie Bowden; Sufana Al Mashhadi; Thomas Marlow; Monika Myszczynska; Nikitha Thakur; Selina N. Beal; Allan Shaw; Shivani Suresh; Scott N. McKinnon; Johnathan Cooper-Knock; Ryan J. H. West; Sam Bonsall; Alex Daniel; Tyler Wells; Vedanth Kumar; Brittany C. S. Ellis; Maureen Higgins; Albena T. Dinkova-Kostova; Tatyana A. Shelkovnikova; Ira N. Kalfus; Ning Shan; Pamela J. Shaw; Laura Ferraiuolo; Richard J. Mead
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Optimised machine learning for time-to-event prediction in healthcare applied to timing of gastrostomy in ALS: a multi-centre, retrospective model development and validation study
err2025-10-10
err0
errOAAI
errMarcel Weinreich; Harry McDonough; Mark Heverin; Éanna Mac Domhnaill; Nancy Yacovzada; Iddo Magen; Yahel Cohen; Calum Harvey; Ahmed Elazzab; Sarah Gornall; Sarah Boddy; James J.P. Alix; Julian M. Kurz; Kevin P. Kenna; Sai Zhang; Alfredo Iacoangeli; Ahmad Al-Khleifat; Michael P. Snyder; Esther Hobson; Adriano Chio; Andrea Malaspina; Andreas Hermann; Caroline Ingre; Juan Vazquez Costa; Leonard van den Berg; Monica Povedano Panadés; Philip van Damme; Phillipe Corcia; Mamede de Carvalho; Ammar Al-Chalabi; Eran Hornstein; Eran Elhaik; Pamela J. Shaw; Orla Hardiman; Christopher McDermott; Johnathan Cooper-Knock
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SpliPath enhances disease gene discovery in case-control analyses of rare splice-altering genetic variants
err2025-09-17
err0
errOAAI
errYan Wang; Charlotte van Dijk; Ilia Timpanaro; Paul Hop; Brendan Kenna; Maarten Kooyman; Eleonora Aronica; R. Jeroen Pasterkamp; Leonard H. van den Berg; Johnathan Cooper-Knock; Jan H. Veldink; Kevin Kenna
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A single-cell, long-read, isoform-resolved case-control study of FTD reveals cell-type-specific and broad splicing dysregulation in human brain
err2025-09-05
err0
errOAAI
errNatan Belchikov; Wen Hu; Li Fan; Anoushka Joglekar; Yi He; Careen Foord; Julien Jarroux; Justine Hsu; Shaun Pollard; Sadaf Amin; Andrey D. Prjibelski; Shiaoching Gong; Sai Zhang; Roberta Giannelli; Harro Seelaar; Alexandru I. Tomescu; M. Elizabeth Ross; Alissa Nana Li; Lea T. Grinberg; Salvatore Spina; Bruce L. Miller; Johnathan Cooper-Knock; Michael P. Snyder; William W. Seeley; Priyanka Rao-Ruiz; Sabine Spijker; August B. Smit; Claire D. Clelland; Li Gan; Hagen U. Tilgner
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Extreme exercise in males is linked to mTOR signalling and onset of amyotrophic lateral sclerosis
errBRAIN
IF11.7
err2025-09-01
err2
errOAAI
errO'Brien, David; Alhathli, Elham; Harwood, Ceryl; Bhattacharya, Debarati; Gupta, Kriti; Julian, Thomas; Weinreich, Marcel; West, Ryan J. H.; Wang, Dennis; Byrne, Ross P.; McLaughlin, Russell L.; Wuu, Joanne; Benatar, Michael; Cooper-Knock, Johnathan; Shaw, Pamela J.
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Human amyotrophic lateral sclerosis/motor neuron disease: The disease-associated microglial pathway is upregulated while APOE genotype governs risk and survival
err2025-06-12
err0
errOAAI
errBridget A. Ashford; Julie E. Simpson; Charlotte Dawson; Delphine Boche; Johnathan Cooper-Knock; Paul R. Heath; Daniel Fillingham; Charlie Appleby-Mallinder; Wenbin Wei; Mark Dunning; J. Robin Highley
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An observational study of pleiotropy and penetrance of amyotrophic lateral sclerosis associated with CAG-repeat expansion of ATXN2
err2025-02-16
err0
errOAAI
errDemaegd, Koen C.; Kernan, Aoife; Cooper-Knock, Johnathan; van Vugt, Joke J. F. A.; Harvey, Calum; Moll, Tobias; O'Brien, David; Gornall, Sarah; Drury, Luke; Farhan, Sali M. K.; Dion, Patrick A.; Rouleau, Guy A.; Western, Andrea; Parsons, Paul J.; Mclean, Benjamin; Benatar, Michael; van den Berg, Leonard H.; Van Damme, Philip; Willem Dankbaar, Jan; Hendrikse, Jeroen; Koole, Wouter; de Bie, Charlotte; Hobson, Esther; Veldink, Jan H.; van de Warrenburg, Bart; Pasterkamp, R. Jeroen; van Rheenen, Wouter; Kirby, Janine; Shaw, Pamela J.; van Es, Michael. A.
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Oligogenic structure of amyotrophic lateral sclerosis has genetic testing, counselling and therapeutic implications
err2025-02-13
err0
errOAAI
errIacoangeli, Alfredo; Dilliott, Allison A.; Al Khleifat, Ahmad; Andersen, Peter M.; Basak, Nazli A.; Cooper-Knock, Johnathan; Corcia, Philippe; Couratier, Philippe; Decarvalho, Mamede; Drory, Vivian E.; Glass, Jonathan D.; Gotkine, Marc; Lerner, Yosef M.; Hardiman, Orla; Landers, John E.; Mclaughlin, Russell L.; Pardina, Jesus S. Mora; Morrison, Karen; Pinto, Susana; Povedano, Monica; Shaw, Christopher E.; Shaw, Pamela J.; Silani, Vincenzo; Ticozzi, Nicola; van Damme, Philip; van den Berg, Leonard H.; Vourc'h, Patrick; Weber, Markus; Veldink, Jan Herman; Dobson, Richard; Rouleau, Guy A.; Al-Chalabi, Ammar; Farhan, Sali M. K.
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A bacterial artificial chromosome mouse model of amyotrophic lateral sclerosis manifests 'space cadet syndrome' on two FVB backgrounds
err2025-02-13
err1
errOAAI
errBadger, Sophie E.; Coldicott, Ian; Kyrgiou-Balli, Ergita; Higginbottom, Adrian; Moutin, Chloe; Imran, Kamallia Mohd; Day, John C.; Cooper-Knock, Johnathan; Mead, Richard J.; Alix, James J. P.
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Guidance for clinical management of pathogenic variant carriers at elevated genetic risk for ALS/FTD
err2024-11-21
err1
errOAAI
errBenatar, Michael; Heiman-Patterson, Terry D.; Cooper-Knock, Johnathan; Brickman, Daniel; Casaletto, Kaitlin B.; Goutman, Stephen A.; Vinceti, Marco; Dratch, Laynie; Arias, Jalayne J.; Swidler, Jean; Turner, Martin R.; Shefner, Jeremy; Westeneng, Henk-Jan; van den Berg, Leonard H.; Al-Chalabi, Ammar
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Considerations in the search for epistasis
err2024-11-19
err0
errOAAI
errBalvert, Marleen; Cooper-Knock, Johnathan; Stamp, Julian; Byrne, Ross P.; Mourragui, Soufiane; van Gils, Juami; Benonisdottir, Stefania; Schlueter, Johannes; Kenna, Kevin; Abeln, Sanne; Iacoangeli, Alfredo; Daub, Josephine T.; Browning, Brian L.; Tas, Gizem; Hu, Jiajing; Wang, Yan; Alhathli, Elham; Harvey, Calum; Pianesi, Luna; Schulte, Sara C.; Gonzalez-Dominguez, Jorge; Garrisson, Erik; Snyder, Michael P.; Schoenhuth, Alexander; Sng, Letitia M. F.; Twine, Natalie A.
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Physical Activity as a Risk Factor for Amyotrophic Lateral Sclerosis
err2024-07-23
err0
PREAI
errShaw, Pamela J.; Cooper-Knock, Johnathan
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Mutations in the tail and rod domains of the neurofilament heavy-chain gene increase the risk of ALS
err2024-05-22
err2
errOAAI
errMarriott, Heather; Spargo, Thomas P.; Al Khleifat, Ahmad; Andersen, Peter M.; Basak, Nazli A.; Cooper-Knock, Johnathan; Corcia, Philippe; Couratier, Philippe; de Carvalho, Mamede; Drory, Vivian; Gotkine, Marc; Landers, John E.; McLaughlin, Russell; Pardina, Jesus S. Mora; Morrison, Karen E.; Pinto, Susana; Shaw, Christopher E.; Shaw, Pamela J.; Silani, Vincenzo; Ticozzi, Nicola; van Damme, Philip; van den Berg, Leonard H.; Vourc'h, Patrick; Weber, Markus; Veldink, Jan H.; Dobson, Richard J.; Schwab, Patrick; Al-Chalabi, Ammar; Iacoangeli, Alfredo
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Mendelian Randomization Study With Clinical Follow-Up Links Metabolites to Risk and Severity of Pulmonary Arterial Hypertension
err2024-03-19
err7
errOAAI
errAlhathli, Elham; Julian, Thomas; Ul Abideen Girach, Zain; Thompson, A. A. Roger; Rhodes, Christopher; Graf, Stefan; Errington, Niamh; Wilkins, Martin R.; Lawrie, Allan; Wang, Dennis; Cooper-Knock, Johnathan
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Rare and common genetic determinants of mitochondrial function determine severity but not risk of amyotrophic lateral sclerosis
errHELIYON
IF3.6
err2024-02-01
err3
errOAAI
errHarvey, Calum; Weinreich, Marcel; Lee, James A. K.; Shaw, Allan C.; Ferraiuolo, Laura; Mortiboys, Heather; Zhang, Sai; Hop, Paul J.; Zwamborn, Ramona A. J.; van Eijk, Kristel; Julian, Thomas H.; Moll, Tobias; Iacoangeli, Alfredo; Al Khleifat, Ahmad; Quinn, John P.; Pfaff, Abigail L.; Koks, Sulev; Poulton, Joanna; Battle, Stephanie L.; Arking, Dan E.; Snyder, Michael P.; Veldink, Jan H.; Kenna, Kevin P.; Shaw, Pamela J.; Cooper-Knock, Johnathan
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