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Section-level genome sequencing and comparative genomics of Aspergillus sections Cavernicolus and Usti Nybo, J. L.; Vesth, T. C.; Theobald, S.; Frisvad, J. C.; Larsen, T. O.; Kjaerboelling, I.; Rothschild-Mancinelli, K.; Lyhne, E. K.; Barry, K.; Clum, A.; Yoshinaga, Y.; Ledsgaard, L.; Daum, C.; Lipzen, A.; Kuo, A.; Riley, R.; Mondo, S.; Labutti, K.; Haridas, S.; Pangalinan, J.; Salamov, A. A.; Simmons, B. A.; Magnuson, J. K.; Chen, J.; Drula, E.; Henrissat, B.; Wiebenga, A.; Lubbers, R. J. M.; Muller, A.; Gomes, A. C. dos Santos; Makela, M. R.; Stajich, J. E.; Grigorie, I., V; Mortensen, U. H.; Andersen, M. R. Share Save
Comparative genomic analysis of thermophilic fungi reveals convergent evolutionary adaptations and gene losses Steindorff, Andrei S.; Aguilar-Pontes, Maria Victoria; Robinson, Aaron J.; Andreopoulos, Bill; Labutti, Kurt; Kuo, Alan; Mondo, Stephen; Riley, Robert; Otillar, Robert; Haridas, Sajeet; Lipzen, Anna; Grimwood, Jane; Schmutz, Jeremy; Clum, Alicia; Reid, Ian D.; Moisan, Marie-Claude; Butler, Gregory; Nguyen, Thi Truc Minh; Dewar, Ken; Conant, Gavin; Drula, Elodie; Henrissat, Bernard; Hansel, Colleen; Singer, Steven; Hutchinson, Miriam I.; de Vries, Ronald P.; Natvig, Donald O.; Powell, Amy J.; Tsang, Adrian; Grigoriev, Igor V. Share Save
Genome evolution and transcriptome plasticity is associated with adaptation to monocot and dicot plants in Colletotrichum fungi Baroncelli, Riccardo; Cobo-Diaz, Jose F.; Benocci, Tiziano; Peng, Mao; Battaglia, Evy; Haridas, Sajeet; Andreopoulos, William; Labutti, Kurt; Pangilinan, Jasmyn; Lipzen, Anna; Koriabine, Maxim; Bauer, Diane; Le Floch, Gaetan; Makela, Miia R.; Drula, Elodie; Henrissat, Bernard; Grigoriev, Igor, V; Crouch, Jo Anne; de Vries, Ronald P.; Sukno, Serenella A.; Thon, Michael R. Share Save
Identification and recombinant expression of a cutinase from Papiliotrema laurentii that hydrolyzes natural and synthetic polyesters Roman, Victor A.; Crable, Bryan R.; Wagner, Dominique N.; Gryganskyi, Andrii; Zelik, Stephen; Cummings, Logan; Hung, Chia S.; Nadeau, Lloyd J.; Schratz, Lucas; Haridas, Sajeet; Pangilinan, Jasmyn; Lipzen, Anna; Na, Hyunsoo; Yan, Mi; Ng, Vivian; Grigoriev, Igor V.; Barlow, Daniel; Biffinger, Justin; Kelley-Loughnane, Nancy; Crookes-Goodson, Wendy J.; Stamps, Blake; Varaljay, Vanessa A. Share Save
Genome-scale phylogeny and comparative genomics of the fungal order Sordariales Hensen, Noah; Bonometti, Lucas; Westerberg, Ivar; Brannstrom, Ioana Onut; Guillou, Sonia; Cros-Aarteil, Sandrine; Calhoun, Sara; Haridas, Sajeet; Kuo, Alan; Mondo, Stephen; Pangilinan, Jasmyn; Riley, Robert; Labutti, Kurt; Andreopoulos, Bill; Lipzen, Anna; Chen, Cindy; Yan, Mi; Daum, Chris; Ng, Vivian; Clum, Alicia; Steindorff, Andrei; Ohm, Robin A.; Martin, Francis; Silar, Philippe; Natvig, Donald O.; Lalanne, Christophe; Gautier, Valerie; Ament-Velasquezi, Sandra Lorena; Kruys, Asa; Hutchinson, Miriam I.; Powell, Amy Jo; Barry, Kerrie; Miller, Andrew N.; Grigoriev, Igor, V; Debuchy, Robert; Gladieux, Pierre; Thoren, Markus Hiltunen; Johannesson, Hanna Share Save
Large-scale genomic analyses with machine learning uncover predictive patterns associated with fungal phytopathogenic lifestyles and traits Dort, E. N.; Layne, E.; Feau, N.; Butyaev, A.; Henrissat, B.; Martin, F. M.; Haridas, S.; Salamov, A.; Grigoriev, I. V.; Blanchette, M.; Hamelin, R. C. Share Save
T-Toxin Virulence Genes: Unconnected Dots in a Sea of Repeats Haridas, Sajeet; Gonzalez, Jennifer B.; Riley, Robert; Koriabine, Maxim; Yan, Mi; Ng, Vivian; Rightmyer, Adriana; Grigoriev, Igor V.; Baker, Scott E.; Turgeon, B. Gillian Share Save
Major proliferation of transposable elements shaped the genome of the soybean rust pathogen Phakopsora pachyrhizi Gupta, Yogesh K.; Marcelino-Guimaraes, Francismar C.; Lorrain, Cecile; Farmer, Andrew; Haridas, Sajeet; Ferreira, Everton Geraldo Capote; Lopes-Caitar, Valeria S.; Oliveira, Liliane Santana; Morin, Emmanuelle; Widdison, Stephanie; Cameron, Connor; Inoue, Yoshihiro; Thor, Kathrin; Robinson, Kelly; Drula, Elodie; Henrissat, Bernard; LaButti, Kurt; Bini, Aline Mara Rudsit; Paget, Eric; Singan, Vasanth; Daum, Christopher; Dorme, Cecile; van Hoek, Milan; Janssen, Antoine; Chandat, Lucie; Tarriotte, Yannick; Richardson, Jake; Melo, Bernardo do Vale Araujo; Wittenberg, Alexander H. J.; Schneiders, Harrie; Peyrard, Stephane; Zanardo, Larissa Goulart; Holtman, Valeria Cristina; Coulombier-Chauvel, Flavie; Link, Tobias, I; Balmer, Dirk; Mueller, Andre N.; Kind, Sabine; Bohnert, Stefan; Wirtz, Louisa; Chen, Cindy; Yan, Mi; Ng, Vivian; Gautier, Pierrick; Meyer, Mauricio Conrado; Voegele, Ralf Thomas; Liu, Qingli; Grigoriev, Igor, V; Conrath, Uwe; Brommonschenkel, Sergio H.; Loehrer, Marco; Schaffrath, Ulrich; Sirven, Catherine; Scalliet, Gabriel; Duplessis, Sebastien; van Esse, H. Peter Share Save
High-Quality Draft Nuclear and Mitochondrial Genome Sequence of Fusarium oxysporum f. sp. albedinis strain 9, the Causal Agent of Bayoud Disease on Date Palm Khoulassa, Siham; Elmoualij, Benaissa; Benlyas, Mohamed; Meziani, Reda; Bouhlali, Eimad Dine Tariq; Houria, Benamar; Alaoui, Youssef El Hilali; Haridas, Sajeet; Guo, Jie; Lipzen, Anna; Hurtado, Catalina Vega; Tejomurthula, Sravanthi; Barry, Kerrie; Grigoriev, Igor V.; Coleman, Jeffrey J.; Ayhan, Dilay Hazal; Ma, Li-Jun; Essarioui, Adil Share Save
Genetic determinants of endophytism in the Arabidopsis root mycobiome Mesny, Fantin; Miyauchi, Shingo; Thiergart, Thorsten; Pickel, Brigitte; Atanasova, Lea; Karlsson, Magnus; Huettel, Bruno; Barry, Kerrie W.; Haridas, Sajeet; Chen, Cindy; Bauer, Diane; Andreopoulos, William; Pangilinan, Jasmyn; LaButti, Kurt; Riley, Robert; Lipzen, Anna; Clum, Alicia; Drula, Elodie; Henrissat, Bernard; Kohler, Annegret; Grigoriev, Igor, V; Martin, Francis M.; Hacquard, Stephane Share Save
101 Dothideomycetes genomes: A test case for predicting lifestyles and emergence of pathogens Haridas, S.; Albert, R.; Binder, M.; Bloem, J.; LaButti, K.; Salamov, A.; Andreopoulos, B.; Baker, S. E.; Barry, K.; Bills, G.; Bluhm, B. H.; Cannon, C.; Castanera, R.; Culley, D. E.; Daum, C.; Ezra, D.; Gonzalez, J. B.; Henrissat, B.; Kuo, A.; Liang, C.; Lipzen, A.; Lutzoni, F.; Magnuson, J.; Mondo, S. J.; Nolan, M.; Ohm, R. A.; Pangilinan, J.; Park, H-J; Ramirez, L.; Alfaro, M.; Sun, H.; Tritt, A.; Yoshinaga, Y.; Zwiers, L-H; Turgeon, B. G.; Goodwin, S. B.; Spatafora, J. W.; Crous, P. W.; Grigoriev, I., V Share Save
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A comparative genomics study of 23 Aspergillus species from section Flavi Kjaerbolling, Inge; Vesth, Tammi; Frisvad, Jens C.; Nybo, Jane L.; Theobald, Sebastian; Kildgaard, Sara; Petersen, Thomas Isbrandt; Kuo, Alan; Sato, Atsushi; Lyhne, Ellen K.; Kogle, Martin E.; Wiebenga, Ad; Kun, Roland S.; Lubbers, Ronnie J. M.; Makela, Miia R.; Barry, Kerrie; Chovatia, Mansi; Clum, Alicia; Daum, Chris; Haridas, Sajeet; He, Guifen; LaButti, Kurt; Lipzen, Anna; Mondo, Stephen; Pangilinan, Jasmyn; Riley, Robert; Salamov, Asaf; Simmons, Blake A.; Magnuson, Jon K.; Henrissat, Bernard; Mortensen, Uffe H.; Larsen, Thomas O.; de Vries, Ronald P.; Grigoriev, Igor V.; Machida, Masayuki; Baker, Scott E.; Andersen, Mikael R. Share Save
Megaphylogeny resolves global patterns of mushroom evolution Varga, Torda; Krizsan, Krisztina; Foldi, Csenge; Dima, Balint; Sanchez-Garcia, Marisol; Sanchez-Ramirez, Santiago; Szollosi, Gergely J.; Szarkandi, Janos G.; Papp, Viktor; Albert, Laszlo; Andreopoulos, William; Angelini, Claudio; Antonin, Vladimir; Barry, Kerrie W.; Bougher, Neale L.; Buchanan, Peter; Buyck, Bart; Bense, Viktoria; Catcheside, Pam; Chovatia, Mansi; Cooper, Jerry; Daemon, Wolfgang; Desjardin, Dennis; Finy, Peter; Geml, Jozsef; Haridas, Sajeet; Hughes, Karen; Justo, Alfredo; Karasinski, Dariusz; Kautmanova, Ivona; Kiss, Brigitta; Kocsube, Sandor; Kotiranta, Heikki; LaButti, Kurt M.; Lechner, Bernardo E.; Liimatainen, Kare; Lipzen, Anna; Lukacs, Zoltan; Mihaltcheva, Sirma; Morgado, Louis N.; Niskanen, Tuula; Noordeloos, Machiel E.; Ohm, Robin A.; Ortiz-Santana, Beatriz; Ovrebo, Clark; Racz, Nikolett; Riley, Robert; Savchenko, Anton; Shiryaev, Anton; Soop, Karl; Spirin, Viacheslav; Szebenyi, Csilla; Tomsovsky, Michal; Tulloss, Rodham E.; Uehling, Jessie; Grigoriev, Igor, V; Vagvolgyi, Csaba; Papp, Tamas; Martin, Francis M.; Miettinen, Otto; Hibbett, David S.; Nagy, Laszlo G. Share Save
Regulation of Yeast-to-Hyphae Transition in Yarrowia lipolytica Pomraning, Kyle R.; Bredeweg, Erin L.; Kerkhoven, Eduard J.; Barry, Kerrie; Haridas, Sajeet; Hundley, Hope; LaButti, Kurt; Lipzen, Anna; Yan, Mi; Magnuson, Jon K.; Simmons, Blake A.; Grigoriev, Igor V.; Nielsen, Jens; Baker, Scott E. Share Save
Investigation of inter- and intraspecies variation through genome sequencing of Aspergillus section Nigri Vesth, Tammi C.; Nybo, Jane L.; Theobald, Sebastian; Frisvad, Jens C.; Larsen, Thomas O.; Nielsen, Kristian F.; Hoof, Jakob B.; Brandl, Julian; Salamov, Asaf; Riley, Robert; Gladden, John M.; Phatale, Pallavi; Nielsen, Morten T.; Lyhne, Ellen K.; Kogle, Martin E.; Strasser, Kimchi; McDonnell, Erin; Barry, Kerrie; Clum, Alicia; Chen, Cindy; LaButti, Kurt; Haridas, Sajeet; Nolan, Matt; Sandor, Laura; Kuo, Alan; Lipzen, Anna; Hainaut, Matthieu; Drula, Elodie; Tsang, Adrian; Magnuson, Jon K.; Henrissat, Bernard; Wiebenga, Ad; Simmons, Blake A.; Makela, Miia R.; de Vries, Ronald P.; Grigoriev, Igor V.; Mortensen, Uffe H.; Baker, Scott E.; Andersen, Mikael R. Share Save
Linking secondary metabolites to gene clusters through genome sequencing of six diverse Aspergillus species Kjaerbolling, Inge; Vesth, Tammi C.; Frisvad, Jens C.; Nybo, Jane L.; Theobald, Sebastian; Kuo, Alan; Bowyer, Paul; Matsuda, Yudai; Mondo, Stephen; Lyhne, Ellen K.; Kogle, Martin E.; Clum, Alicia; Lipzen, Anna; Salamov, Asaf; Ngan, Chew Yee; Daum, Chris; Chiniquy, Jennifer; Barry, Kerrie; LaButti, Kurt; Haridas, Sajeet; Simmons, Blake A.; Magnuson, Jon K.; Mortensen, Uffe H.; Larsen, Thomas O.; Grigoriev, Igor V.; Baker, Scott E.; Andersen, Mikael R. Share Save
Comparative genomics of Coniophora olivacea reveals different patterns of genome expansion in Boletales Castanera, Raul; Perez, Gumer; Lopez-Varas, Leticia; Amselem, Joelle; LaButti, Kurt; Singan, Vasanth; Lipzen, Anna; Haridas, Sajeet; Barry, Kerrie; Grigoriev, Igor V.; Pisabarro, Antonio G.; Ramirez, Lucia Share Save
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