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SPARKI: a tool for the statistical analysis of pathogen identification results Boccacino, Jacqueline M.; Del Castillo Velasco-Herrera, Martin; Beale, Mathew A.; Billington, Jamie; Vermes, Ian; Obolenski, Sofia; Wong, Kim; Torrens, Laura; Moody, Sarah; Perdomo, Sandra; Cheema, Saamin; Francis, Bailey; Offord, Victoria; Butler, Adam P.; Adams, David J. Share Save
Geographic and age variations in mutational processes in colorectal cancer Diaz-Gay, Marcos; dos Santos, Wellington; Moody, Sarah; Kazachkova, Mariya; Abbasi, Ammal; Steele, Christopher D.; Vangara, Raviteja; Senkin, Sergey; Wang, Jingwei; Fitzgerald, Stephen; Bergstrom, Erik N.; Khandekar, Azhar; Otlu, Burcak; Abedi-Ardekani, Behnoush; de Carvalho, Ana Carolina; Cattiaux, Thomas; Penha, Ricardo Cortez Cardoso; Gaborieau, Valerie; Chopard, Priscilia; Carreira, Christine; Cheema, Saamin; Latimer, Calli; Teague, Jon W.; Mukeriya, Anush; Zaridze, David; Cox, Riley; Albert, Monique; Phouthavongsy, Larry; Gallinger, Steven; Malekzadeh, Reza; Niavarani, Ahmadreza; Miladinov, Marko; Eric, Katarina; Milosavljevic, Sasa; Sangrajrang, Suleeporn; Curado, Maria Paula; Aguiar, Samuel; Reis, Monise Tadin; Romagnolo, Luis Gustavo; Guimaraes, Denise Peixoto; Holcatova, Ivana; Kalvach, Jaroslav; Vaccaro, Carlos Alberto; Pinero, Tamara Alejandra; Swiatkowska, Beata; Lissowska, Jolanta; Roszkowska-Purska, Katarzyna; Huertas-Salgado, Antonio; Shibata, Tatsuhiro; Shiba, Satoshi; Sangkhathat, Surasak; Chitapanarux, Taned; Roshandel, Gholamreza; Ashton-Prolla, Patricia; Damin, Daniel C.; de Oliveira, Francine Hehn; Humphreys, Laura; Lawley, Trevor D.; Perdomo, Sandra; Stratton, Michael R.; Brennan, Paul Share Save
The complexity of tobacco smoke-induced mutagenesis in head and neck cancer Torrens, Laura; Moody, Sarah; de Carvalho, Ana Carolina; Kazachkova, Mariya; Abedi-Ardekani, Behnoush; Cheema, Saamin; Senkin, Sergey; Cattiaux, Thomas; Penha, Ricardo Cortez Cardoso; Atkins, Joshua R.; Gaborieau, Valerie; Chopard, Priscilia; Carreira, Christine; Abbasi, Ammal; Bergstrom, Erik N.; Vangara, Raviteja; Wang, Jingwei; Fitzgerald, Stephen; Latimer, Calli; Diaz-Gay, Marcos; Jones, David; Teague, Jon; Pinto, Felipe Ribeiro; Kowalski, Luiz Paulo; Polesel, Jerry; Giudici, Fabiola; de Oliveira, Jose Carlos; Lagiou, Pagona; Lagiou, Areti; Vilensky, Marta; Mates, Dana; Mates, Ioan N.; Arantes, Lidia M.; Reis, Rui; Podesta, Jose Roberto V.; von Zeidler, Sandra V.; Holcatova, Ivana; Curado, Maria Paula; Canova, Cristina; Fabianova, Elenora; Rodriguez-Urrego, Paula A.; Humphreys, Laura; Alexandrov, Ludmil B.; Brennan, Paul; Stratton, Michael R.; Perdomo, Sandra Share Save
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Phase I study of WNT974 in combination with spartalizumab in patients with cutaneous melanoma Ascierto, P. A.; Rodon, J.; De Vos, F. Y. F. L.; Gambardella, V.; De Miguel, M.; Marquez-Rodas, I.; Gil Martin, M.; Robert, C.; Del Vecchio, M.; Moreno Garcia, V.; Schadendorf, D.; Jamal, R.; Sloan, S.; Mclaughlin, M.; Murray, S.; Ruiz, B. Gomez-Carrillo; Hsiue, E.; Moody, S.; Arance, A. M. Share Save
Mutational signatures in colorectal cancer from 11 countries reveal new insights in early-onset colorectal cancer Dos Santos, Wellington; Diaz-Gay, Marcos; Moody, Sarah; Senkin, Sergey; Abedi-Ardekani, Behnoush; Kazachkova, Mariya; Fitzgerald, Stephen; Cheema, Saamin; Gaborieau, Valerie; Wang, Jingwei; Carreira, Christine; Cattiaux, Thomas; Chopard, Priscilia; Latimer, Calli; Zaridze, David; Cox, Riley; Malekzadeh, Reza; Ognjanovic, Miodrag; Sangrajrang, Suleeporn; Curado, Maria P.; Reis, Rui M.; Holcatova, Ivana; Vaccaro, Carlos; Swiatkowska, Beata; Lissowska, Jolanta; Wiesner, Carolina; Shibata, Tatsuhiro; Sangkhathat, Surasak; Ashton-Prolla, Patricia; Humphreys, Laura; Perdomo, Sandra; de Caravalho, Ana C.; Stratton, Mike; Brennan, Paul; Alexandrov, Ludmil Share Save
Assigning mutational signatures to individual samples and individual somatic mutations with SigProfilerAssignment Vangara, Raviteja; Diaz-Gay, Marcos; Barnes, Mark D.; Wang, Xi; Islam, S. M. Ashiqul; Vermes, Ian; Duke, Stephen; Narasimman, Nithish Bharadhwaj; Yang, Ting; Jiang, Zichen; Moody, Sarah; Senkin, Sergey; Brennan, Paul; Stratton, Michael R.; Alexandrov, Ludmil B. Share Save
Understanding the causes of head and neck cancer using mutational signature analysis Torrens, Laura; Moody, Sarah; De Carvalho, Carol; Senkin, Sergey; Cheema, Saamin; Kazachkova, Mariya; Gaborieau, Valerie; Abedi-Ardekani, Behnoush; Penha, Ricardo Cortez Cardoso; Atkins, Joshua; Chopard, Priscilia; Wang, Jingwei; Fitzgerald, Stephen; Latimer, Calli; Carreira, Christine; Cattiaux, Thomas; Diaz-Gay, Marcos; Humphreys, Laura; Alexandrov, Ludmil B.; Stratton, Michael R.; Perdomo, Sandra; Brennan, Paul Share Save
The Mutographs biorepository: A unique genomic resource to study cancer around the world Perdomo, Sandra; Abedi-Ardekani, Behnoush; de Carvalho, Ana Carolina; Ferreiro-Iglesias, Aida; Gaborieau, Valerie; Cattiaux, Thomas; Renard, Helene; Chopard, Priscilia; Carreira, Christine; Spanu, Andreea; Nikmanesh, Arash; Penha, Ricardo Cortez Cardoso; Antwi, Samuel O.; Ashton-Prolla, Patricia; Canova, Cristina; Chitapanarux, Taned; Cox, Riley; Curado, Maria Paula; de Oliveira, Jose Carlos; Dzamalala, Charles; Fabianova, Elenora; Ferri, Lorenzo; Fitzgerald, Rebecca; Foretova, Lenka; Gallinger, Steven; Goldstein, Alisa M.; Holcatova, Ivana; Huertas, Antonio; Janout, Vladimir; Jarmalaite, Sonata; Kaneva, Radka; Kowalski, Luiz Paulo; Kulis, Tomislav; Lagiou, Pagona; Lissowska, Jolanta; Malekzadeh, Reza; Mates, Dana; McCorrmack, Valerie; Menya, Diana; Mhatre, Sharayu; Mmbaga, Blandina Theophil; de Moricz, Andre; Nyirady, Peter; Ognjanovic, Miodrag; Papadopoulou, Kyriaki; Polesel, Jerry; Purdue, Mark P.; Rascu, Stefan; Batista, Lidia Maria Rebolho; Reis, Rui Manuel; Pinto, Luis Felipe Ribeiro; Rodriguez-Urrego, Paula A.; Sangkhathat, Surasak; Sangrajrang, Suleeporn; Shibata, Tatsuhiro; Stakhovsky, Eduard; Swiatkowska, Beata; Vaccaro, Carlos; de Podesta, Jose Roberto Vasconcelos; Vasudev, Naveen S.; Vilensky, Marta; Yeung, Jonathan; Zaridze, David; Zendehdel, Kazem; Scelo, Ghislaine; Chanudet, Estelle; Wang, Jingwei; Fitzgerald, Stephen; Latimer, Calli; Moody, Sarah; Humphreys, Laura; Alexandrov, Ludmil B.; Stratton, Michael R.; Brennnan, Paul Share Save
Mutational processes in tumour-adjacent normal kidneys across countries with varying cancer incidence rates Wang, Yichen; Moody, Sarah; Abedi-Ardekani, Behnoush; Latimer, Calli; Cheema, Saamin; Wang, Jingwei; Fitzgerald, Stephen; Humphreys, Laura; Brennan, Paul; Stratton, Michael R. Share Save
Uncovering novel mutational signatures by de novo extraction with SigProfilerExtractor Islam, S. M. Ashiqul; Diaz-Gay, Marcos; Wu, Yang; Barnes, Mark; Vangara, Raviteja; Bergstrom, Erik N.; He, Yudou; Vella, Mike; Wang, Jingwei; Teague, Jon W.; Clapham, Peter; Moody, Sarah; Senkin, Sergey; Li, Yun Rose; Riva, Laura; Zhang, Tongwu; Gruber, Andreas J.; Steele, Christopher D.; Otlu, Burcak; Khandekar, Azhar; Abbasi, Ammal; Humphreys, Laura; Syulyukina, Natalia; Brady, Samuel W.; Alexandrov, Boian S.; Pillay, Nischalan; Zhang, Jinghui; Adams, David J.; Martincorena, Inigo; Wedge, David C.; Landi, Maria Teresa; Brennan, Paul; Stratton, Michael R.; Rozen, Steven G.; Alexandrov, Ludmil B. Share Save
An international report on bacterial communities in esophageal squamous cell carcinoma Nomburg, Jason; Bullman, Susan; Nasrollahzadeh, Dariush; Collisson, Eric A.; Abedi-Ardekani, Behnoush; Akoko, Larry O.; Atkins, Joshua R.; Buckle, Geoffrey C.; Gopal, Satish; Hu, Nan; Kaimila, Bongani; Khoshnia, Masoud; Malekzadeh, Reza; Menya, Diana; Mmbaga, Blandina T.; Moody, Sarah; Mulima, Gift; Mushi, Beatrice P.; Mwaiselage, Julius; Mwanga, Ally; Newton, Yulia; Ng, Dianna L.; Radenbaugh, Amie; Rwakatema, Deogratias S.; Selekwa, Msiba; Schuz, Joachim; Taylor, Philip R.; Vaske, Charles; Goldstein, Alisa; Stratton, Michael R.; McCormack, Valerie; Brennan, Paul; DeCaprio, James A.; Meyerson, Matthew; Mmbaga, Elia J.; Van Loon, Katherine Share Save
Mutational signatures in esophageal squamous cell carcinoma from eight countries with varying incidence Moody, Sarah; Senkin, Sergey; Islam, S. M. Ashiqul; Wang, Jingwei; Nasrollahzadeh, Dariush; Penha, Ricardo Cortez Cardoso; Fitzgerald, Stephen; Bergstrom, Erik N.; Atkins, Joshua; He, Yudou; Khandekar, Azhar; Smith-Byrne, Karl; Carreira, Christine; Gaborieau, Valerie; Latimer, Calli; Thomas, Emily; Abnizova, Irina; Bucciarelli, Pauline E.; Jones, David; Teague, Jon W.; Abedi-Ardekani, Behnoush; Serra, Stefano; Scoazec, Jean-Yves; Saffar, Hiva; Azmoudeh-Ardalan, Farid; Sotoudeh, Masoud; Nikmanesh, Arash; Poustchi, Hossein; Niavarani, Ahmadreza; Gharavi, Samad; Eden, Michael; Richman, Paul; Campos, Lia S.; Fitzgerald, Rebecca C.; Ribeiro, Luis Felipe; Soares-Lima, Sheila Coelho; Dzamalala, Charles; Mmbaga, Blandina Theophil; Shibata, Tatsuhiro; Menya, Diana; Goldstein, Alisa M.; Hu, Nan; Malekzadeh, Reza; Fazel, Abdolreza; McCormack, Valerie; McKay, James; Perdomo, Sandra; Scelo, Ghislaine; Chanudet, Estelle; Humphreys, Laura; Alexandrov, Ludmil B.; Brennan, Paul; Stratton, Michael R. Share Save
Thyroid MALT lymphoma: self-harm to gain potential T-cell help Wu, Fangtian; Watanabe, Natsuko; Tzioni, Maria-Myrsini; Akarca, Ayse; Zhang, Chunye; Li, Yan; Chen, Zi; Cucco, Francesco; Carmell, Natasha; Noh, Jaeduk Yoshimura; Ito, Koichi; Dobson, Rachel; Moody, Sarah; Yao, Wenqing; Zhang, Wenyan; Liu, Weiping; Liu, Hongxiang; Okosun, Jessica; Chott, Andreas; Bi, Yingwen; Chuang, Shih-Sung; Raderer, Markus; Li, Jian-Yong; Marafioti, Teresa; Du, Ming-Qing Share Save
Mutagenicity of 2-hydroxyamino-1-methyl-6-phenylimidazo [4,5-b] pyridine (N-OH-PhIP) in human TP53 knock-in (Hupki) mouse embryo fibroblasts Holzl-Armstrong, Lisa; Moody, Sarah; Kucab, Jill E.; Zwart, Edwin P.; Bellamri, Medjda; Luijten, Mirjam; Turesky, Robert J.; Stratton, Michael R.; Arlt, Volker M.; Phillips, David H. Share Save
Mutagenicity of acrylamide and glycidamide in humanTP53knock-in (Hupki) mouse embryo fibroblasts Holzl-Armstrong, Lisa; Kucab, Jill E.; Moody, Sarah; Zwart, Edwin P.; Loutkotova, Lucie; Duffy, Veronica; Luijten, Mirjam; da Costa, Goncalo Gamboa; Stratton, Michael R.; Phillips, David H.; Arlt, Volker M. Share Save
Novel GPR34 and CCR6 mutation and distinct genetic profiles in MALT lymphomas of different sites Moody, Sarah; Thompson, Joe Sneath; Chuang, Shih-Sung; Liu, Hongxiang; Raderer, Markus; Vassiliou, George; Wlodarska, Iwona; Wu, Fangtian; Cogliatti, Sergio; Robson, Alistair; Ashton-Key, Margaret; Bi, Yingwen; Goodlad, John; Du, Ming-Qing Share Save
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