Shushan Toneyan - Publications, H-index & Citations

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Shushan Toneyan

University of California San Diego

8H-index

28Paper Count

233Citation Count

Published Papers 6

Publication Date

Probabilistic and machine-learning methods for predicting local rates of transcription elongation from nascent RNA sequencing data

NUCLEIC ACIDS RESEARCH

IF13.1

2025-02-18

OAAI

Liu, Lingjie; Zhao, Yixin; Hassett, Rebecca; Toneyan, Shushan; Koo, Peter K.

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Analysis of single-cell CRISPR perturbations indicates that enhancers predominantly act multiplicatively

CELL GENOMICS

IF9

2024-11-01

OAAI

Zhou, Jessica L.; Guruvayurappan, Karthik; Toneyan, Shushan; Chen, Hsiuyi V.; Chen, Aaron R.; Koo, Peter; Mcvicker, Graham

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Interpreting cis-regulatory interactions from large-scale deep neural networks

NATURE GENETICS

IF31.8

2024-09-16

PREAI

Toneyan, Shushan; Koo, Peter K.

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EvoAug: improving generalization and interpretability of genomic deep neural networks with evolution-inspired data augmentations

GENOME BIOLOGY

IF9.4

2023-05-05

OAAI

Lee, Nicholas Keone; Tang, Ziqi; Toneyan, Shushan; Koo, Peter K.

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ETV6 dependency in Ewing sarcoma by antagonism of EWS-FLI1-mediated enhancer activation

NATURE CELL BIOLOGY

IF19.1

2023-01-19

OAAI

Gao, Yuan; He, Xue-Yan; Wu, Xiaoli S.; Huang, Yu-Han; Toneyan, Shushan; Ha, Taehoon; Ipsaro, Jonathan J.; Koo, Peter K.; Joshua-Tor, Leemor; Bailey, Kelly M.; Egeblad, Mikala; Vakoc, Christopher R.

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Evaluating deep learning for predicting epigenomic profiles

NATURE MACHINE INTELLIGENCE

IF23.9

2022-12-05

OAAI

Toneyan, Shushan; Tang, Ziqi; Koo, Peter K.

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Research Directions