Not logged in Overexpression of human DNA polymerase theta is a biomarker of aggressive and DNA repair-deficient papillary thyroid cancers Frye, C. Corbin; Tennant, Lena; Yeager, Ashley; Azimzadeh, Pedram; Bhardwaj, Priya; Xu, Yifei; Liu, Jingxia; Othoum, Ghofran; Maher, Christopher A.; Chernock, Rebecca; Goedegebuure, S. Peter; Gillanders, William; Olson, John A.; Brown, Taylor C. Share Save
Integrative analysis of ultra-deep RNA-seq reveals alternative promoter usage as a mechanism of activating oncogenic programmes during prostate cancer progression Zhang, Meng; Sjostrom, Martin; Cui, Xiekui; Foye, Adam; Farh, Kyle; Shrestha, Raunak; Lundberg, Arian; Dang, Ha X.; Li, Haolong; Febbo, Phillip G.; Aggarwal, Rahul; Alumkal, Joshi J.; Small, Eric J.; Maher, Christopher A.; Feng, Felix Y.; Quigley, David A. Share Save
Epigenomic analysis of plasma cell-free DNA identifies stemness features associated with worse prognosis in AR-altered lethal metastatic castration resistant prostate cancer Chauhan, Pradeep Singh; Alahi, Irfan; Sinha, Savar; Mueller, Ryan; Shiang, Alexander L.; Webster, Jace; Dang, Ha X.; Saha, Debanjan; Greiner, Lilli; Yang, Breanna; Ledet, Elisa M.; Babbra, Ramandeep K.; Feng, Wenjia; Harris, Peter K.; Qaium, Faridi; Jaeger, Ellen B.; Miller, Patrick J.; Caputo, Sydney A.; Sartor, Oliver A.; Pachynski, Russell K.; Maher, Christopher A.; Chaudhuri, Aadel A. Share Save
Single-cell transcriptomics reveals long noncoding RNAs associated with tumor biology and the microenvironment in pancreatic cancer Dang, Ha X.; Saha, Debanjan; Jayasinghe, Reyka; Zhao, Sidi; Coonrod, Emily; Mudd, Jacqueline; Goedegebuure, S. Peter; Fields, Ryan; Ding, Li; Maher, Christopher A. Share Save
Genetic characterization of primary and metastatic high-grade serous ovarian cancer tumors reveals distinct features associated with survival Kotnik, Emilee N.; Mullen, Mary M.; Spies, Nicholas C.; Li, Tiandao; Inkman, Matthew; Zhang, Jin; Martins-Rodrigues, Fernanda; Hagemann, Ian S.; McCourt, Carolyn K.; Thaker, Premal H.; Hagemann, Andrea R.; Powell, Matthew A.; Mutch, David G.; Khabele, Dineo; Longmore, Gregory D.; Mardis, Elaine R.; Maher, Christopher A.; Miller, Christopher A.; Fuh, Katherine C. Share Save
Alternative promoter usage is linked to transcriptional and epigenetic alterations during prostate cancer progression Zhang, Meng; Sjostrom, Martin; Shrestha, Raunak; Lundberg, Arian; Moreno-Rodriguez, Thaidy; Foye, Adam; Dang, Ha X.; Alumkal, Joshi J.; Aggarwal, Rahul; Small, Eric J.; Maher, Christopher A.; Feng, Felix Y.; Quigley, David Share Save
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Characterization of cell-type specific circular RNAs associated with colorectal cancer metastasis Zhao, Sidi; Ly, Amy; Mudd, Jacqueline L.; Rozycki, Emily B.; Webster, Jace; Coonrod, Emily; Othoum, Ghofran; Luo, Jingqin; Dang, Ha X.; Fields, Ryan C.; Maher, Christopher A. Share Save
Combinatorial genomic and epigenomic cell-free DNA analysis of high-risk metastatic castration resistant prostate cancer reveals prognostic liquid biopsy signatures Alahi, Irfan; Chauhan, Pradeep S.; Shiang, Alexander L.; Webster, Jace; Dang, Ha X.; Greiner, Lilli; Yang, Breanna; Ledet, Elisa M.; Babbra, Ramandeep K.; Feng, Wenjia; Harris, Peter K.; Jaeger, Ellen B.; Miller, Patrick J.; Caputo, Sydney A.; Santos, Giordano Cittolin; Sartor, Oliver; Pachynski, Russell K.; Maher, Christopher A.; Chaudhuri, Aadel A. Share Save
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Integrated analysis of genomic and transcriptomic data for the discovery of splice-associated variants in cancer Cotto, Kelsy C.; Feng, Yang-Yang; Ramu, Avinash; Richters, Megan; Freshour, Sharon L.; Skidmore, Zachary L.; Xia, Huiming; McMichael, Joshua F.; Kunisaki, Jason; Campbell, Katie M.; Chen, Timothy Hung-Po; Rozycki, Emily B.; Adkins, Douglas; Devarakonda, Siddhartha; Sankararaman, Sumithra; Lin, Yiing; Chapman, William C.; Maher, Christopher A.; Arora, Vivek; Dunn, Gavin P.; Uppaluri, Ravindra; Govindan, Ramaswamy; Griffith, Obi L.; Griffith, Malachi Share Save
The 5-Hydroxymethylcytosine Landscape of Prostate Cancer Sjostrom, Martin; Zhao, Shuang G.; Levy, Samuel; Zhang, Meng; Ning, Yuhong; Shrestha, Raunak; Lundberg, Arian; Herberts, Cameron; Foye, Adam; Aggarwal, Rahul; Hua, Junjie T.; Li, Haolong; Bergamaschi, Anna; Maurice-Dror, Corinne; Maheshwari, Ashutosh; Chen, Sujun; Ng, Sarah W. S.; Ye, Wenbin; Petricca, Jessica; Fraser, Michael; Chesner, Lisa; Perry, Marc D.; Moreno-Rodriguez, Thaidy; Chen, William S.; Alumkal, Joshi J.; Chou, Jonathan; Morgans, Alicia K.; Beer, Tomasz M.; Thomas, George, V; Gleave, Martin; Lloyd, Paul; Phillips, Tierney; McCarthy, Erin; Haffner, Michael C.; Zoubeidi, Amina; Annala, Matti; Reiter, Robert E.; Rettig, Matthew B.; Witte, Owen N.; Fong, Lawrence; Bose, Rohit; Huang, Franklin W.; Luo, Jianhua; Bjartell, Anders; Lang, Joshua M.; Mahajan, Nupam P.; Lara, Primo N.; Evans, Christopher P.; Tran, Phuoc T.; Posadas, Edwin M.; He, Chuan; Cui, Xiao-Long; Huang, Jiaoti; Zwart, Wilbert; Gilbert, Luke A.; Maher, Christopher A.; Boutros, Paul C.; Chi, Kim N.; Ashworth, Alan; Small, Eric J.; He, Housheng H.; Wyatt, Alexander W.; Quigley, David A.; Feng, Felix Y. Share Save
Pan-Cancer Analysis Reveals Recurrent BCAR4 Gene Fusions across Solid Tumors Nickless, Andrew; Zhang, Jin; Othoum, Ghofran; Webster, Jace; Inkman, Matthew J.; Coonrod, Emily; Fontes, Sherron; Rozycki, Emily B.; Maher, Christopher A.; White, Nicole M. Share Save
LINC00355 regulates p27KIP expression by binding to MENIN to induce proliferation in late-stage relapse breast cancer Eteleeb, Abdallah M.; Thunuguntla, Prasanth K.; Gelev, Kyla Z.; Tang, Cynthia Y.; Rozycki, Emily B.; Miller, Alexander; Lei, Jonathan T.; Jayasinghe, Reyka G.; Dang, Ha X.; White, Nicole M.; Reis-Filho, Jorge S.; Mardis, Elaine R.; Ellis, Matthew J.; Ding, Li; Silva-Fisher, Jessica M.; Maher, Christopher A. Share Save
DANSR: A Tool for the Detection of Annotated and Novel Small RNAs Zhang, Jin; Eteleeb, Abdallah M.; Rozycki, Emily B.; Inkman, Matthew J.; Ly, Amy; Scharf, Russell E.; Jayachandran, Kay; Krasnick, Bradley A.; Mazur, Thomas; White, Nicole M.; Fields, Ryan C.; Maher, Christopher A. Share Save
Phase 1 study combining alisertib with nab-paclitaxel in patients with advanced solid malignancies Lim, Kian-Huat; Opyrchal, Mateusz; Acharya, Abhi; Boice, Nick; Wu, Ningying; Gao, Feng; Webster, Jace; Lockhart, Albert C.; Waqar, Saiama N.; Govindan, Ramaswamy; Morgensztern, Daniel; Picus, Joel; Tan, Benjamin R.; Baggstrom, Maria Q.; Maher, Christopher A.; Wang-Gillam, Andrea Share Save
A community challenge to evaluate RNA-seq, fusion detection, and isoform quantification methods for cancer discovery Creason, Allison; Haan, David; Dang, Kristen; Chiotti, Kami E.; Inkman, Matthew; Lamb, Andrew; Yu, Thomas; Hu, Yin; Norman, Thea C.; Buchanan, Alex; van Baren, Marijke J.; Spangler, Ryan; Rollins, M. Rick; Spellman, Paul T.; Rozanov, Dmitri; Zhang, Jin; Maher, Christopher A.; Caloian, Cristian; Watson, John D.; Uhrig, Sebastian; Haas, Brian J.; Jain, Miten; Akeson, Mark; Ahsen, Mehmet Eren; Stolovitzky, Gustavo; Guinney, Justin; Boutros, Paul C.; Stuart, Joshua M.; Ellrott, Kyle Share Save
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Targeted Therapy to β3 Integrin Reduces Chemoresistance in Breast Cancer Bone Metastases Fox, Gregory C.; Su, Xinming; Davis, Jennifer L.; Xu, Yalin; Kwakwa, Kristin A.; Ross, Michael H.; Fontana, Francesca; Xiang, Jingyu; Esser, Alison K.; Cordell, Elizabeth; Pagliai, Kristen; Dang, Ha X.; Sivapackiam, Jothilingam; Stewart, Sheila A.; Maher, Christopher A.; Bakewell, Suzanne J.; Fitzpatrick, James A. J.; Sharma, Vijay; Achilefu, Samuel; Veis, Deborah J.; Lanza, Gregory M.; Weilbaecher, Katherine N. Share Save
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