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SaveDevelopment of a deep learning algorithm for Paneth cell density quantification for inflammatory bowel disease
Kang, Liang-, I; Sarullo, Kathryn; Marsh, Jon N.; Lu, Liang; Khonde, Pooja; Ma, Changqing; Haritunians, Talin; Mujukian, Angela; Mengesha, Emebet; Mcgovern, Dermot P. B.; Stappenbeck, Thaddeus S.; Swamidass, S. Joshua; Liu, Ta-Chiang Share Save Investigating the impact of steroid dependence on gastrointestinal surgical outcomes from UK BiobankKartoun, Uri; Koseki, Akira; Kosugi, Akihiro; Njoku, Kingsley; Yadete, Tesfaye; Koski, Eileen; Bettencourt-Silva, Joao; Mulligan, Natasha; Hu, Jianying; Liu, Julia; Stappenbeck, Thaddeus; Anand, Vibha Share Save Macrophage LRRK2 hyperactivity impairs autophagy and induces Paneth cell dysfunctionSun, Shengxiang; Hodel, Miki; Wang, Xiang; De Vicente, Javier; Haritunians, Talin; Debebe, Anketse; Hung, Chen-Ting; Ma, Changqing; Malique, Atika; Nguyen, Hoang N.; Agam, Maayan; Maloney, Michael T.; Goo, Marisa S.; Kluss, Jillian H.; Mishra, Richa; Frein, Jennifer; Foster, Amanda; Ballentine, Samuel; Pandey, Uday; Kern, Justin; Yang, Shaohong; Mengesha, Emebet; Balasubramanian, Iyshwarya; Arguello, Annie; Estrada, Anthony A.; Gao, Nan; Peter, Inga; Mcgovern, Dermot P. B.; Henry, Anastasia G.; Stappenbeck, Thaddeus S.; Liu, Ta-Chiang Share Save Western diet reduces small intestinal intraepithelial lymphocytes via FXR-Interferon pathwayHung, Chen-Ting; Ma, Changqing; Panda, Santosh K.; Trsan, Tihana; Hodel, Miki; Frein, Jennifer; Foster, Amanda; Sun, Shengxiang; Wu, Hung-Ting; Kern, Justin; Mishra, Richa; Jain, Umang; Ho, Ya-Chi; Colonna, Marco; Stappenbeck, Thaddeus S.; Liu, Ta- Chiang Share Save Immunometabolic chaos in septic shockShrestha, Deepmala; Pant, Bishnu D.; Roychowdhury, Sanjoy; Gandhirajan, Anugraha; Cross, Emily; Chhabria, Mamta; Bauer, Seth R.; Jeng, Margaret; Mitchell, Megan; Mehkri, Omar; Zaidi, Fatima; Ahuja, Akash; Wang, Xiaofeng; Wang, Yuxin; Mcdonald, Christine; Longworth, Michelle S.; Stappenbeck, Thaddeus S.; Stark, George R.; Scheraga, Rachel G.; Vachharajani, Vidula Share Save Ileal Paneth Cell Phenotype is a Cellular Biomarker for Pouch Complications in Ulcerative ColitisMa, Changqing; Haritunians, Talin; Gremida, Anas K.; Syal, Gaurav; Shah, Janaki; Yang, Shaohong; Ramos Del Aguila de Rivers, Claudia; Storer, Chad E.; Chen, Ling; Mengesha, Emebet; Mujukian, Angela; Hanna, Mary; Fleshner, Phillip; Binion, David G.; Vandussen, Kelli L.; Stappenbeck, Thaddeus S.; Head, Richard D.; Ciorba, Matthew A.; Mcgovern, Dermot P. B.; Liu, Ta-Chiang Share Save Diet-omics in the Study of Urban and Rural Crohn disease Evolution (SOURCE) cohortBraun, Tzipi; Feng, Rui; Amir, Amnon; Levhar, Nina; Shacham, Hila; Mao, Ren; Hadar, Rotem; Toren, Itamar; Algavi, Yadid; Abu-Saad, Kathleen; Zhuo, Shuoyu; Efroni, Gilat; Malik, Alona; Picard, Orit; Yavzori, Miri; Agranovich, Bella; Liu, Ta-Chiang; Stappenbeck, Thaddeus S.; Denson, Lee; Kalter-Leibovici, Ofra; Gottlieb, Eyal; Borenstein, Elhanan; Elinav, Eran; Chen, Minhu; Ben-Horin, Shomron; Haberman, Yael Share Save A TH17-intrinsic IL-1β-STAT5 axis drives steroid resistance in autoimmune neuroinflammationMiller-Little, William A.; Chen, Xing; Salazar, Vanessa; Liu, Caini; Bulek, Katarzyna; Zhou, Julie Y.; Li, Xiao; Stueve, Olaf; Stappenbeck, Thaddeus; Dubyak, George; Zhao, Junjie; Li, Xiaoxia Share Save Phase I Trial of alpha-lactalbumin vaccine in high risk operable triple negative breast cancer (TNBC) and patients at high genetic risk for TNBCJohnson, Justin; Rhoades, Emily; Levengood, Holly; Moore, Halle; Kruse, Megan; Roesch, Erin; Abraham, Jame; Elliott, Brenna; Swartz, Rachel; Pederson, Holly; Haury, Elena; Ali, Azka; Onger, Tiffany; Sciallis, Andrew; Al-Hilli, Zahraa; Wei, Wei; Stappenbeck, Thaddeus; Budd, George Share Save Cryptosporidium infection of human small intestinal epithelial cells induces type III interferon and impairs infectivity of RotavirusGreigert, Valentin; Saraav, Iti; Son, Juhee; Zhu, Yinxing; Dayao, Denise; Antia, Avan; Tzipori, Saul; Witola, William H.; Stappenbeck, Thaddeus S.; Ding, Siyuan; Sibley, L. David Share Save Microbiota-produced indole metabolites disrupt mitochondrial function and inhibitFunkhouser-Jones, Lisa J.; Xu, Rui; Wilke, Georgia; Fu, Yong; Schriefer, Lawrence A.; Makimaa, Heyde; Rodgers, Rachel; Kennedy, Elizabeth A.; VanDussen, Kelli L.; Stappenbeck, Thaddeus S.; Baldridge, Megan T.; Sibley, L. David Share Save Share Save Share Save Share Save Mesothelium-Derived Factors Shape GATA6-Positive Large Cavity MacrophagesLai, Chin-Wen; Bagadia, Prachi; Barisas, Derek A. G.; Jarjour, Nicholas N.; Wong, Rachel; Ohara, Takahiro; Muegge, Brian D.; Lu, Qiuhe; Xiong, Shanshan; Edelson, Brian T.; Murphy, Kenneth M.; Stappenbeck, Thaddeus S. Share Save Share Save Share Save Share Save Chronic Toxoplasma gondii infection enhances to colitisSaraav, Iti; Cervantes-Barragan, Luisa; Olias, Philipp; Fu, Yong; Wang, Qiuling; Wang, Leran; Wang, Yi; Mack, Matthias; Baldridge, Megan T.; Stappenbeck, Thaddeus; Colonna, Marco; Sibley, L. David Share Save 
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