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Ramnik J. Xavier

Broad Institute of MIT and Harvard

186H-index
999Paper Count
18.4WCitation Count
Published Papers 372
Publication Date
Antisense transcription reveals disease-associated adaptations in the human gut microbiome
err2026-08-10
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PREAI
errMarie-Madlen Pust; Ahmed M. T. Mohamed; Martin Stražar; Aranzazu Arias-Rojas; Edward Cunningham-Oakes; Eric M. Brown; Amanda Bumber; Gleb Pishchany; Chenhao Li; Ashwin N. Ananthakrishnan; Alistair C. Darby; Hera Vlamakis; Damian R. Plichta; Ramnik J. Xavier
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Microbiota-mediated induction of beige adipocytes in response to dietary cues
errNature
IF48.5
err2026-03-04
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errOAAI
errTakeshi Tanoue; Manabu Nagayama; Ayumi J. A. Roochana; Samuel Zimmerman; Orr Ashenberg; Tanvi Jain; Ryo Igarashi; Satoshi Sasajima; Kozue Takeshita; Nicola Hetherington; Nobuyuki Okahashi; Masahiro Ueda; Morichika Konishi; Yoshiaki Nakayama; Aki Minoda; Ashwin N. Skelly; Yasuhiko Minokoshi; Nicholas Pucci; Daniel R. Mende; Makoto Arita; Hironori Yamamoto; Shunji Watanabe; Kouichi Miura; Scott W. Behie; Wataru Suda; Toshiro Sato; Koji Atarashi; Mami Matsushita; Shingo Kajimura; Damian R. Plichta; Masayuki Saito; Ramnik J. Xavier; Kenya Honda
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Multi-modal skin atlas identifies a multicellular immune-stromal community associated with disrupted cornification and specific T cell expansion in atopic dermatitis
err2026-02-25
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errOAAI
errEvgenij Fiskin; Gökcen Eraslan; Maria B. Alora-Palli; Tanvi Jain; Juan Manuel Leyva-Castillo; Sean Kim; Heather Choe; Caleb A. Lareau; Helena Lau; Emily P. Finan; Isabella Teixeira-Soldano; Brenna LaBere; Anne Chu; Brian Woods; Janet Chou; Michal Slyper; Julia Waldman; Sabina Islam; Lynda Schneider; Wanda Phipatanakul; Craig Platt; Orit Rozenblatt-Rosen; Toni M. Delorey; Orr Ashenberg; Jacques Deguine; Gideon P. Smith; Raif S. Geha; Aviv Regev; Ramnik J. Xavier
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Intelectin-2 is a broad-spectrum antimicrobial lectin
err2026-01-13
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errOAAI
errAmanda E. Dugan; Deepsing Syangtan; Eric B. Nonnecke; Rajeev S. Chorghade; Amanda L. Peiffer; Jenny J. Yao; Jessica Ille-Bunn; Dallis Sergio; Gleb Pishchany; Catherine Dhennezel; Hera Vlamakis; Sunhee Bae; Sheila Johnson; Chariesse Ellis; Soumi Ghosh; Jill W. Alty; Carolyn E. Barnes; Miri Krupkin; Gerardo Cárcamo-Oyarce; Katharina Ribbeck; Ramnik J. Xavier; Charles L. Bevins; Laura L. Kiessling
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Bidirectional CRISPR screens decode a GLIS3-dependent fibrotic cell circuit
errNature
IF48.5
err2026-01-07
err0
errOAAI
errVladislav Pokatayev; Alok Jaiswal; Angela R. Shih; Åsa Segerstolpe; Bihua Li; Elizabeth A. Creasey; Yanhua Zhao; Crystal Lin; Shane Murphy; Chih-Hung Chou; Daniel B. Graham; Ramnik J. Xavier
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Neuro-epithelial circuits promote sensory convergence and intestinal immunity
errNature
IF48.5
err2026-01-07
err0
PREAI
errWen Zhang; Elizabeth R. Emanuel; Hiroshi Yano; Jazib Uddin; Stephen Gaudino; Zili Xie; Hiroshi Ichise; Zhen Wang; Maureen N. Cowan; Mengze Lyu; Xiaoxiao Hou; Peng Zeng; Elin Hu; Victoria Ribeiro de Godoy; Alex Grier; Nina Estep; Julien R. Ishibashi; Stephanie Anover-Sombke; Peter J. Skene; Toufic Mayassi; Ramnik J. Xavier; Ronald N. Germain; Anna-Maria Globig; Maximilian Heeg; Ananda W. Goldrath; Brian S. Kim; Hongzhen Hu; David Artis
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Microbiome-derived bile acid signatures in early life and their association with islet autoimmunity
err2025-12-03
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errOAAI
errSantosh Lamichhane; Alex M. Dickens; Tanja Buchacher; Tianai Lou; Vincent Charron-Lamoureux; Roosa Kattelus; Pragya Karmacharya; Lucas Pinto da Silva; Matilda Kråkström; Omid Rasool; Partho Sen; Corinn Walker; Abubaker Patan; Emily C. Gentry; Simone Zuffa; Aron Arzoomand; Tadepally Lakshmikanth; Jaromir Mikeš; Aman Mebrahtu; Tommi Vatanen; Manuela Raffatellu; Karsten Zengler; Tuulia Hyötyläinen; Ramnik J. Xavier; Petter Brodin; Riitta Lahesmaa; Pieter C. Dorrestein; Mikael Knip; Matej Orešič
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Allosteric modulation of the solute carrier transporter SLC39A8 potentiates manganese and cadmium uptake
err2025-11-03
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PREAI
errDamm-Ganamet, Kelly L.; Moon, Clara; Wickenden, Alan D.; Tichenor, Mark; Ge, Yunhui; Mercado-Marin, Eduardo, V; Chiou, Brian; Manughian-Peter, Ayla; Mirzadegan, Taraneh; Venable, Jennifer D.; Xavier, Ramnik J.; Towne, Jennifer E.; Graham, Daniel B.; Perrigoue, Jacqueline
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Regional encoding of enteric nervous system responses to microbiota and type 2 inflammation
errScience
IF45.8
err2025-10-30
err0
PREAI
errPeng Tan; Alok Jaiswal; Shane P. Murphy; Eric M. Brown; Hailey Wheeler; Chien-Wen Su; Emily P. Finan; Guadalupe J. Jasso; Hai Ning Shi; Daniel B. Graham; Toni M. Delorey; Jacques Deguine; Ramnik J. Xavier
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Human immunodeficiency virus and antiretroviral therapies exert distinct influences across diverse gut microbiomes
err2025-10-30
err0
PREAI
errKarolina S. Jabbar; Sambhawa Priya; Jiawu Xu; Upasana Das Adhikari; Gleb Pishchany; Ahmed T. M. Mohamed; Joachim Johansen; Kumar Thurimella; Cristin McCabe; Hera Vlamakis; Samson Okello; Toni M. Delorey; Alexander Lankowski; Mosepele Mosepele; Mark J. Siedner; Damian R. Plichta; Douglas S. Kwon; Ramnik J. Xavier
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Autoimmune disease risk gene ANKRD55 promotes TH17 effector function through metabolic modulation
err2025-09-11
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PREAI
errXu, Jinjin; Kong, Lingjia; Creasey, Elizabeth A.; Rath, Sneha; Deng, Lei; Avila-Pacheco, Julian; Li, Chenhao; Oliver, Blayne A.; Dao, Tyler T.; Shih, Angela R.; Daly, Mark J.; Shalek, Alex K.; Clish, Clary B.; Graham, Daniel B.; Deguine, Jacques; Xavier, Ramnik J.
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Eggerthella lenta Produces a Cryptic Pro-inflammatory Lipid
err2025-07-12
err0
errOAAI
errYern-Hyerk Shin; Sunghee Bang; Ramnik Xavier; Jon Clardy
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An International Multicenter Study of Native and Immigrant South Asian Crohn’s Disease
err2025-07-07
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PREAI
errMaryam K. Ibrahim; Rebecca Cohen; Tarun Chhibba; Mukesh Kumar; Helena Lau; Dermot McGovern; Manisha Bajpai; Bharati Kochar; Steven R. Brant; Jonathan Lee; Vineet Ahuja; Subra Kugathasan; Ramnik Xavier; Ashwin N. Ananthakrishnan
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Single-cell and spatial transcriptomics of stricturing Crohn’s disease highlights a fibrosis-associated network
err2025-06-25
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PREAI
errLingjia Kong; Sathish Subramanian; Åsa Segerstolpe; Vy Tran; Angela R. Shih; Grace T. Carter; Hiroko Kunitake; Shaina W. Twardus; Jasmine Li; Shivam Gandhi; Marco E. Kaper; Christy Cauley; Eric J. Chen; Caroline B. M. Porter; Toni M. Delorey; Liliana Bordeianou; Rocco Ricciardi; Ashwin N. Ananthakrishnan; Helena Lau; Daniel B. Graham; Richard Hodin; Jacques Deguine; Christopher S. Smillie; Ramnik J. Xavier
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Bacteroides sphingolipids promote anti-inflammatory responses through the mevalonate pathway
err2025-05-30
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PREAI
errEric M. Brown; Emily R. Temple; Sarah Jeanfavre; Julian Avila-Pacheco; Noel Taylor; Kai Liu; Phuong N.U. Nguyen; Ahmed M.T. Mohamed; Panhasith Ung; Rebecca A. Walker; Daniel B. Graham; Clary B. Clish; Ramnik J. Xavier
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Association of distinct microbial and metabolic signatures with microscopic colitis
err2025-05-23
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errOAAI
errChen, Albert Sheng-Yin; Kim, Hanseul; Nzabarushimana, Etienne; Shen, Jiaxian; Williams, Katherine; Gurung, Jenny; McGoldrick, Jessica; Burke, Kristin E.; Yarze, Joseph C.; Nguyen, Long H.; Staller, Kyle; Chung, Daniel C.; Xavier, Ramnik J.; Khalili, Hamed
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Type 2 cytokines act on enteric sensory neurons to regulate neuropeptide-driven host defense
errScience
IF45.8
err2025-05-22
err0
PREAI
errRocky M. Barilla; Clara Berard; Linyu Sun; Sumiti Sandhu; Sarah Zaghouani; Krishna S. Iyer; Gizem Altun; Chien-Wen Su; Jacques Deguine; Vasundhara Singh; Yu Hou; Kanupriya Kusumakar; Michael L. Rutlin; Meenakshi Rao; Habib Zaghouani; Hai Ning Shi; Ramnik J. Xavier; Vijay K. Kuchroo
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The Ulcerative Colitis-Associated Gene NXPE1 Catalyzes Glycan Modifications on Colonic Mucin
err2025-03-11
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errOAAI
errHumeidi, Ranad; Oshiro-Rapley, Noriko; Gu, Xiebin; An, Joon Soo; Ananthakrishnan, Ashwin N.; Creasey, Elizabeth A.; Daly, Mark J.; Schreiber, Stuart L.; Graham, Daniel B.; Seyedsayamdost, Mohammad R.; Xavier, Ramnik J.
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