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Robust Off-Target EBV Detection in DNA-and RNA-based Next-generation Sequencing Analysis of Tumors Chen, Maria; Sabbagh, Mark; Bulow, Uriel; Wang, Charlotte; Dias-Santagata, Dora; Rivera, Miguel; Jan, Max; Le, Long; Iafrate, John; Nardi, Valentina; Fisch, Adam Share Save
MYOD1L122R induces chemoresistance and elevates cancer stem cell programs through WNT11-ROR2-VANGL2 signaling in aggressive rhabdomyosarcoma Wei, Yun; Sanchez, Luis Antonio Corchete; Antelo, Diego; Mathavarajah, Sabateeshan; Wang, Shuze; Weissman, Alexander Daiki; Lee, Jihee; Rivera, Miguel N.; Rheinbay, Esther; Langenau, David M. Share Save
Preclinical spheroid models identify BMX as a therapeutic target for metastatic MYCN nonamplified neuroblastoma Sundaramoorthy, Santhoshkumar; Colombo, Daniele Filippo; Sanalkumar, Rajendran; Broye, Liliane; Bourloud, Katia Balmas; Boulay, Gaylor; Cironi, Luisa; Stamenkovic, Ivan; Renella, Raffaele; Kuttler, Fabien; Turcatti, Gerardo; Rivera, Miguel N.; Muhlethaler-Mottet, Annick; Bardet, Anais Flore; Riggi, Nicolo Share Save
Targeting TRIP13 in favorable histology Wilms tumor with nuclear export inhibitors synergizes with doxorubicin Mittal, Karuna; Cooper, Garrett W.; Lee, Benjamin P.; Su, Yongdong; Skinner, Katie T.; Shim, Jenny; Jonus, Hunter C.; Kim, Won Jun; Doshi, Mihir; Almanza, Diego; Kynnap, Bryan D.; Christie, Amanda L.; Yang, Xiaoping; Cowley, Glenn S.; Leeper, Brittaney A.; Morton, Christopher L.; Dwivedi, Bhakti; Lawrence, Taylor; Rupji, Manali; Keskula, Paula; Meyer, Stephanie; Clinton, Catherine M.; Bhasin, Manoj; Crompton, Brian D.; Tseng, Yuen-Yi; Bohm, Jesse S.; Ligon, Keith L.; Root, David E.; Murphy, Andrew J.; Weinstock, David M.; Gokhale, Prafulla C.; Spangle, Jennifer M.; Rivera, Miguel N.; Mullen, Elizabeth A.; Stegmaier, Kimberly; Goldsmith, Kelly C.; Hahn, William C.; Hong, Andrew L. Share Save
A Comparison of Clear Cell Sarcoma to Jaw and Salivary Tumors Bearing EWS Fusions Xhori, Ornela; Deol, Navkiran; Rivera, Camron M.; Zavras, Jason; Weil, Sophia G.; Zafari, Hirad; Thierauf, Julia C.; Faquin, William C.; Choy, Edwin; Rivera, Miguel N.; Iafrate, A. John; Jaquinet, Alexandre; Troulis, Maria J. Share Save
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Highly connected 3D chromatin networks established by an oncogenic fusion protein shape tumor cell identity Sanalkumar, Rajendran; Dong, Rui; Lee, Lukuo; Xing, Yu -Hang; Iyer, Sowmya; Letovanec, Igor; La Rosa, Stefano; Finzi, Giovanna; Musolino, Elettra; Papait, Roberto; Chebib, Ivan; Nielsen, G. Petur; Renella, Raffaele; Cote, Gregory M.; Choy, Edwin; Aryee, Martin; Stegmaier, Kimberly; Stamenkovic, Ivan; Rivera, Miguel N.; Riggi, Nicole Share Save
The ETS transcription factor ETV6 constrains the transcriptional activity of EWS-FLI to promote Ewing sarcoma Lu, Diana Y. Y.; Ellegast, Jana M.; Ross, Kenneth N.; Malone, Clare F.; Lin, Shan; Mabe, Nathaniel W.; Dharia, Neekesh V.; Meyer, Ashleigh; Conway, Amy; Su, Angela H. H.; Selich-Anderson, Julia; Taslim, Cenny; Byrum, Andrea K.; Seong, Bo Kyung A.; Adane, Biniam; Gray, Nathanael S.; Rivera, Miguel N.; Lessnick, Stephen L.; Stegmaier, Kimberly Share Save
Non-canonical integrin signaling activates EGFR and RAS-MAPK-ERK signaling in small cell lung cancer Rubio, Karla; Romero-Olmedo, Addi J.; Sarvari, Pouya; Swaminathan, Guruprasadh; Ranvir, Vikas P.; Rogel-Ayala, Diana G.; Cordero, Julio; Guenther, Stefan; Mehta, Aditi; Bassaly, Birgit; Braubach, Peter; Wygrecka, Malgorzata; Gattenloehner, Stefan; Tresch, Achim; Braun, Thomas; Dobreva, Gergana; Rivera, Miguel N.; Singh, Indrabahadur; Graumann, Johannes; Barreto, Guillermo Share Save
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CD4+ T helper 2 cells suppress breast cancer by inducing terminal differentiation Boieri, Margherita; Malishkevich, Anna; Guennoun, Ranya; Marchese, Emanuela; Kroon, Sanne; Trerice, Kathryn E. E.; Awad, Mary; Park, Jong Ho; Iyer, Sowmya; Kreuzer, Johannes; Haas, Wilhelm; Rivera, Miguel N. N.; Demehri, Shadmehr Share Save
EWSR1-ATF1 dependent 3D connectivity regulates oncogenic and differentiation programs in Clear Cell Sarcoma Moeller, Emely; Praz, Viviane; Rajendran, Sanalkumar; Dong, Rui; Cauderay, Alexandra; Xing, Yu-Hang; Lee, Lukuo; Fusco, Carlo; Broye, Liliane C.; Cironi, Luisa; Iyer, Sowmya; Rengarajan, Shruthi; Awad, Mary E.; Naigles, Beverly; Letovanec, Igor; Ormas, Nicola; Finzi, Giovanna; La Rosa, Stefano; Sessa, Fausto; Chebib, Ivan; Nielsen, G. Petur; Digklia, Antonia; Spentzos, Dimitrios; Cote, Gregory M.; Choy, Edwin; Aryee, Martin; Stamenkovic, Ivan; Boulay, Gaylor; Rivera, Miguel N.; Riggi, Nicolo Share Save
Genome-wide functional perturbation of human microsatellite repeats using engineered zinc finger transcription factors Tak, Y. Esther; Boulay, Gaylor; Lee, Lukuo; Iyer, Sowmya; Perry, Nicholas T.; Schultz, Hayley T.; Garcia, Sara P.; Broye, Liliane; Horng, Joy E.; Rengarajan, Shruthi; Naigles, Beverly; Volorio, Angela; Sander, Jeffry D.; Gong, Jingyi; Riggi, Nicolo; Joung, J. Keith; Rivera, Miguel N. Share Save
Reverse Transcriptase Inhibition Disrupts Repeat Element Life Cycle in Colorectal Cancer Rajurkar, Mihir; Parikh, Aparna R.; Solovyov, Alexander; You, Eunae; Kulkarni, Anupriya S.; Chu, Chong; Xu, Katherine H.; Jaicks, Christopher; Taylor, Martin S.; Wu, Connie; Alexander, Katherine A.; Good, Charly R.; Szabolcs, Annamaria; Gerstberger, Stefanie; V. Tran, Antuan; Xu, Nova; Ebright, Richard Y.; Van Seventer, Emily E.; Vo, Kevin; Tai, Eric C.; Lu, Chenyue; Joseph-Chazan, Jasmin; Raabe, Michael J.; Nieman, Linda T.; Desai, Niyati; Arora, Kshitij S.; Ligorio, Matteo; Thapar, Vishal; Cohen, Limor; Garden, Padric M.; Senussi, Yasmeen; Zheng, Hui; Allen, Jill N.; Blaszkowsky, Lawrence S.; Clark, Jeffrey W.; Goyal, Lipika; Wo, Jennifer Y.; Ryan, David P.; Corcoran, Ryan B.; Deshpande, Vikram; Rivera, Miguel N.; Aryee, Martin J.; Hong, Theodore S.; Berger, Shelley L.; Walt, David R.; Burns, Kathleen H.; Park, Peter J.; Greenbaum, Benjamin D.; Ting, David T. Share Save
A non-dividing cell population with high pyruvate dehydrogenase kinase activity regulates metabolic heterogeneity and tumorigenesis in the intestine Sebastian, Carlos; Ferrer, Christina; Serra, Maria; Choi, Jee-Eun; Ducano, Nadia; Mira, Alessia; Shah, Manasvi S.; Stopka, Sylwia A.; Perciaccante, Andrew J.; Isella, Claudio; Moya-Rull, Daniel; Vara-Messler, Marianela; Giordano, Silvia; Maldi, Elena; Desai, Niyati; Capen, Diane E.; Medico, Enzo; Cetinbas, Murat; Sadreyev, Ruslan, I; Brown, Dennis; Rivera, Miguel N.; Sapino, Anna; Breault, David T.; Agar, Nathalie Y. R.; Mostoslavsky, Raul Share Save
The deacylase SIRT5 supports melanoma viability by influencing chromatin dynamics Giblin, William; Bringman-Rodenbarger, Lauren; Guo, Angela H.; Kumar, Surinder; Monovich, Alexander C.; Mostafa, Ahmed M.; Skinner, Mary E.; Azar, Michelle; Mady, Ahmed S. A.; Chung, Carolina H.; Kadambi, Namrata; Melong, Keith-Allen; Lee, Ho-Joon; Zhang, Li; Sajjakulnukit, Peter; Trefely, Sophie; Varner, Erika L.; Iyer, Sowmya; Wang, Min; Wilmott, James S.; Soyer, H. Peter; Sturm, Richard A.; Pritchard, Antonia L.; Andea, Aleodor A.; Scolyer, Richard A.; Stark, Mitchell S.; Scott, David A.; Fullen, Douglas R.; Bosenberg, Marcus W.; Chandrasekaran, Sriram; Nikolovska-Coleska, Zaneta; Verhaegen, Monique E.; Snyder, Nathaniel W.; Rivera, Miguel N.; Osterman, Andrei L.; Lyssiotis, Costas A.; Lombard, David B. Share Save
Opposing immune and genetic mechanisms shape oncogenic programs in synovial sarcoma Jerby-Arnon, Livnat; Neftel, Cyril; Shore, Marni E.; Weisman, Hannah R.; Mathewson, Nathan D.; McBride, Matthew J.; Haas, Brian; Izar, Benjamin; Volorio, Angela; Boulay, Gaylor; Cironi, Luisa; Richman, Alyssa R.; Broye, Liliane C.; Gurski, Joseph M.; Luo, Christina C.; Mylvaganam, Ravindra; Nguyen, Lan; Mei, Shaolin; Melms, Johannes C.; Georgescu, Christophe; Cohen, Ofir; Buendia-Buendia, Jorge E.; Segerstolpe, Asa; Sud, Malika; Cuoco, Michael S.; Labes, Danny; Gritsch, Simon; Zollinger, Daniel R.; Ortogero, Nicole; Beechem, Joseph M.; Petur Nielsen, G.; Chebib, Ivan; Nguyen-Ngoc, Tu; Montemurro, Michael; Cote, Gregory M.; Choy, Edwin; Letovanec, Igor; Cherix, Stephane; Wagle, Nikhil; Sorger, Peter K.; Haynes, Alex B.; Mullen, John T.; Stamenkovic, Ivan; Rivera, Miguel N.; Kadoch, Cigall; Wucherpfennig, Kai W.; Rozenblatt-Rosen, Orit; Suva, Mario L.; Riggi, Nicolo; Regev, Aviv Share Save
LGR5 in Barrett's Esophagus and its Utility in Predicting Patients at Increased Risk of Advanced Neoplasia Neyaz, Azfar; Odze, Robert D.; Rickelt, Steffen; Nieman, Linda T.; Bledsoe, Jacob R.; Mahadevan, Krishnan K.; Arora, Kshitij; Jeck, William R.; Taylor, Martin S.; Gala, Manish; Patil, Deepa T.; Yilmaz, Omer H.; Rivera, Miguel N.; Ting, David T.; Deshpande, Vikram Share Save
The chromatin landscape of primary synovial sarcoma organoids is linked to specific epigenetic mechanisms and dependencies Boulay, Gaylor; Cironi, Luisa; Garcia, Sara P.; Rengarajan, Shruthi; Xing, Yu-Hang; Lee, Lukuo; Awad, Mary E.; Naigles, Beverly; Iyer, Sowmya; Broye, Liliane C.; Keskin, Tugba; Cauderay, Alexandra; Fusco, Carlo; Letovanec, Igor; Chebib, Ivan; Nielsen, Petur Gunnalugur; Tercier, Stephane; Cherix, Stephane; Tu Nguyen-Ngoc; Cote, Gregory; Choy, Edwin; Provero, Paolo; Suva, Mario L.; Rivera, Miguel N.; Stamenkovic, Ivan; Riggi, Nicolo Share Save
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