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J

Juan C. Irwin

university of california san francisco

38H-index
96Paper Count
5.8KCitation Count
Published Papers 23
Publication Date
Plasma or Serum? A Pilot Evaluation of Matrix Selection for Integrated Metabolomics and Exposomics of Clinical Samples
errToxics
IF4.1
err2026-06-06
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errXiaowen Ji; Julian Edwards; Miaomiao Wang; Juan C. Irwin; Binya Liu; Amanda M. Gutierrez; Lin Li; Jeannette C. Lager; Camran R. Nezhat; David K. Stevenson; Tomiko T. Oskotsky; Marina Sirota; Dimitri Abrahamsson; Linda C. Giudice; Tracey J. Woodruff; Joshua F. Robinson; June-Soo Park
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Anticlustering for sample allocation to minimize batch effects
err2025-08-18
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errMartin Papenberg; Cheng Wang; Maïgane Diop; Syed Hassan Bukhari; Boris Oskotsky; Brittany R. Davidson; Kim Chi Vo; Binya Liu; Juan C. Irwin; Alexis J. Combes; Brice Gaudilliere; Jingjing Li; David K. Stevenson; Gunnar W. Klau; Linda C. Giudice; Marina Sirota; Tomiko T. Oskotsky
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Comorbidity analysis and clustering of endometriosis patients using electronic health records
err2025-07-31
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errUmair Khan; Tomiko T. Oskotsky; Bahar D. Yilmaz; Jacquelyn Roger; Ketrin Gjoni; Juan C. Irwin; Jessica Opoku-Anane; Noémie Elhadad; Linda C. Giudice; Marina Sirota
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Global endometrial DNA methylation analysis reveals insights into mQTL regulation and associated endometriosis disease risk and endometrial function
err2023-08-16
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errMortlock, Sally; Houshdaran, Sahar; Kosti, Idit; Rahmioglu, Nilufer; Nezhat, Camran; Vitonis, Allison F.; Andrews, Shan V.; Grosjean, Parker; Paranjpe, Manish; Horne, Andrew W.; Jacoby, Alison; Lager, Jeannette; Opoku-Anane, Jessica; Vo, Kim Chi; Manvelyan, Evelina; Sen, Sushmita; Ghukasyan, Zhanna; Collins, Frances; Santamaria, Xavier; Saunders, Philippa; Kober, Kord; McRae, Allan F.; Terry, Kathryn L.; Vallve-Juanico, Julia; Becker, Christian; Rogers, Peter A. W.; Irwin, Juan C.; Zondervan, Krina; Montgomery, Grant W.; Missmer, Stacey; Sirota, Marina; Giudice, Linda
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The genetic basis of endometriosis and comorbidity with other pain and inflammatory conditions
err2023-03-13
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errRahmioglu, Nilufer; Mortlock, Sally; Ghiasi, Marzieh; Moller, Peter L.; Stefansdottir, Lilja; Galarneau, Genevieve; Turman, Constance; Danning, Rebecca; Law, Matthew H.; Sapkota, Yadav; Christofidou, Paraskevi; Skarp, Sini; Giri, Ayush; Banasik, Karina; Krassowski, Michal; Lepamets, Maarja; Marciniak, Blazej; Noukas, Margit; Perro, Danielle; Sliz, Eeva; Sobalska-Kwapis, Marta; Thorleifsson, Gudmar; Topbas-Selcuki, Nura F.; Vitonis, Allison; Westergaard, David; Arnadottir, Ragnheidur; Burgdorf, Kristoffer S.; Campbell, Archie; Cheuk, Cecilia S. K.; Clementi, Caterina; Cook, James; De Vivo, Immaculata; DiVasta, Amy; Dorien, O.; Donoghue, Jacqueline F.; Edwards, Todd; Fontanillas, Pierre; Fung, Jenny N.; Geirsson, Reynir T.; Girling, Jane E.; Harkki, Paivi; Harris, Holly R.; Healey, Martin; Heikinheimo, Oskari; Holdsworth-Carson, Sarah; Hostettler, Isabel C.; Houlden, Henry; Houshdaran, Sahar; Irwin, Juan C.; Jarvelin, Marjo-Riitta; Kamatani, Yoichiro; Kennedy, Stephen H.; Kepka, Ewa; Kettunen, Johannes; Kubo, Michiaki; Kulig, Bartosz; Kurra, Venla; Laivuori, Hannele; Laufer, Marc R.; Lindgren, Cecilia M.; MacGregor, Stuart; Mangino, Massimo; Martin, Nicholas G.; Matalliotaki, Charoula; Matalliotakis, Michail; Murray, Alison D.; Ndungu, Anne; Nezhat, Camran; Olsen, Catherine M.; Opoku-Anane, Jessica; Padmanabhan, Sandosh; Paranjpe, Manish; Peters, Maire; Polak, Grzegorz; Porteous, David J.; Rabban, Joseph; Rexrode, Kathyrn M.; Romanowicz, Hanna; Saare, Merli; Saavalainen, Liisu; Schork, Andrew J.; Sen, Sushmita; Shafrir, Amy L.; Siewierska-Gorska, Anna; Slomka, Marcin; Smith, Blair H.; Smolarz, Beata; Szaflik, Tomasz; Szyllo, Krzysztof; Takahashi, Atsushi; Terry, Kathryn L.; Tomassetti, Carla; Treloar, Susan A.; Vanhie, Arne; Vincent, Katy; Vo, Kim C.; Werring, David J.; Zeggini, Eleftheria; Zervou, Maria, I; Stefansson, Kari; Nyegaard, Mette; Uimari, Outi; Yurttas-Beim, Piraye; Tung, Joyce Y.; Adachi, Sosuke; Buring, Julie E.; Ridker, Paul M.; D'Hooghe, Thomas; Goulielmos, George N.; Hapangama, Dharani K.; Hayward, Caroline; Horne, Andrew W.; Low, Siew-Kee; Martikainen, Hannu; Chasman, Daniel, I; Rogers, Peter A. W.; Saunders, Philippa T.; Sirota, Marina; Spector, Tim; Strapagiel, Dominik; Whiteman, David C.; Giudice, Linda C.; Velez-Edwards, Digna R.; Kraft, Peter; Salumets, Andres; Nyholt, Dale R.; Magi, Reedik; Becker, Christian M.; Steinthorsdottir, Valgerdur; Missmer, Stacey A.; Montgomery, Grant W.; Morris, Andrew P.; Zondervan, Krina T.
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Transcriptomic analysis supports collective endometrial cell migration in the pathogenesis of adenomyosis
err2022-09-01
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errZhai, Junyu; Li, Shang; Sen, Sushmita; Vallve-Juanico, Julia; Irwin, Juan C.; Vo, Kim Chi; Wan, Jipeng; Du, Yanzhi; Chen, Zi-Jiang; Giudice, Linda C.
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Deep immunophenotyping reveals endometriosis is marked by dysregulation of the mononuclear phagocytic system in endometrium and peripheral blood
err2022-04-15
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errVallve-Juanico, Julia; George, Ashley F.; Sen, Sushmita; Thomas, Reuben; Shin, Min-Gyoung; Kushnoor, Divyashree; Vasquez, Joshua J.; Vo, Kim Chi; Irwin, Juan C.; Roan, Nadia R.; Combes, Alexis J.; Giudice, Linda C.
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Whole-Tissue Deconvolution and scRNAseq Analysis Identify Altered Endometrial Cellular Compositions and Functionality Associated With Endometriosis
err2022-01-05
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errBunis, Daniel G.; Wang, Wanxin; Vallve-Juanico, Julia; Houshdaran, Sahar; Sen, Sushmita; Ben Soltane, Isam; Kosti, Idit; Vo, Kim Chi; Irwin, Juan C.; Giudice, Linda C.; Sirota, Marina
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In vitro evidence that platelet-rich plasma stimulates cellular processes involved in endometrial regeneration
err2018-02-05
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errAghajanova, Lusine; Houshdaran, Sahar; Balayan, Shaina; Manvelyan, Evelina; Irwin, Juan C.; Huddleston, Heather G.; Giudice, Linda C.
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Effects of noncavity-distorting fibroids on endometrial gene expression and function
err2017-08-30
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errAghajanova, Lusine; Houshdaran, Sahar; Irwin, Juan C.; Giudice, Linda C.
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Stromal fibroblasts from perimenopausal endometrium exhibit a different transcriptome than those from the premenopausal endometrium
err2017-08-19
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errErikson, David W.; Barragan, Fatima; Piltonen, Terhi T.; Chen, Joseph C.; Balayan, Shaina; Irwin, Juan C.; Giudice, Linda C.
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Human Endometrial Fibroblasts Derived from Mesenchymal Progenitors Inherit Progesterone Resistance and Acquire an Inflammatory Phenotype in the Endometrial Niche in Endometriosis
err2016-05-01
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errBarragan, Fatima; Irwin, Juan C.; Balayan, Shaina; Erikson, David W.; Chen, Joseph C.; Houshdaran, Sahar; Piltonen, Terhi T.; Spitzer, Trimble L. B.; George, Ashley; Rabban, Joseph T.; Nezhat, Camran; Giudice, Linda C.
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Endometrial stromal fibroblasts from women with polycystic ovary syndrome have impaired progesterone-mediated decidualization, aberrant cytokine profiles and promote enhanced immune cell migration in vitro
err2015-03-06
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errPiltonen, T. T.; Chen, J. C.; Khatun, M.; Kangasniemi, M.; Liakka, A.; Spitzer, T.; Tran, N.; Huddleston, H.; Irwin, J. C.; Giudice, L. C.
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Molecular Classification of Endometriosis and Disease Stage Using High-Dimensional Genomic Data
err2014-12-01
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errTamaresis, John S.; Irwin, Juan C.; Goldfien, Gabriel A.; Rabban, Joseph T.; Burney, Richard O.; Nezhat, Camran; DePaolo, Louis V.; Giudice, Linda C.
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Seminal plasma induces global transcriptomic changes associated with cell migration, proliferation and viability in endometrial epithelial cells and stromal fibroblasts
err2014-03-13
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errChen, Joseph C.; Johnson, Brittni A.; Erikson, David W.; Piltonen, Terhi T.; Barragan, Fatima; Chu, Simon; Kohgadai, Nargis; Irwin, Juan C.; Greene, Warner C.; Giudice, Linda C.; Roan, Nadia R.
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The human oviduct transcriptome reveals an anti-inflammatory, anti-angiogenic, secretory and matrix-stable environment during embryo transit
err2013-10-01
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errHess, A. P.; Talbi, S.; Hamilton, A. E.; Baston-Buest, D. M.; Nyegaard, M.; Irwin, J. C.; Barragan, F.; Kruessel, J. S.; Germeyer, A.; Giudice, L. C.
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Mesenchymal Stem/Progenitors and Other Endometrial Cell Types From Women With Polycystic Ovary Syndrome (PCOS) Display Inflammatory and Oncogenic Potential
err2013-09-01
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errPiltonen, T. T.; Chen, J.; Erikson, D. W.; Spitzer, T. L. B.; Barragan, F.; Rabban, J. T.; Huddleston, H.; Irwin, J. C.; Giudice, L. C.
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Perivascular Human Endometrial Mesenchymal Stem Cells Express Pathways Relevant to Self-Renewal, Lineage Specification, and Functional Phenotype
err2012-02-01
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errSpitzer, Trimble L. B.; Rojas, Angela; Zelenko, Zara; Aghajanova, Lusine; Erikson, David W.; Barragan, Fatima; Meyer, Michelle; Tamaresis, John S.; Hamilton, Amy E.; Irwin, Juan C.; Giudice, Linda C.
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Comparative Transcriptome Analysis of Human Trophectoderm and Embryonic Stem Cell-Derived Trophoblasts Reveal Key Participants in Early Implantation
err2012-01-01
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errAghajanova, Lusine; Shen, Shehua; Rojas, Angela M.; Fisher, Susan J.; Irwin, Juan C.; Giudice, Linda C.
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