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J

Jonas Fischer

Berlin Institute of Health

5H-index
19Paper Count
80Citation Count
Published Papers 5
Publication Date
Pipeline Olympics: continuable benchmarking of computational workflows for DNA methylation sequencing data against an experimental gold standard
err2025-10-28
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errLin, Yu-Yu; Breuer, Kersten; Weichenhan, Dieter; Lafrenz, Pascal; Sarnataro, Antonella; Wilk, Agata; Chepeleva, Maryna; Mucke, Oliver; Schonung, Maximilian; Petermann, Franziska; Kensche, Philip Reiner; Weiser, Lena; Thommen, Frank; Giacomelli, Gideon; Nordstroem, Karl; Gonzalez-Avalos, Edahi; Merkel, Angelika; Kretzmer, Helene; Fischer, Jonas; Kramer, Stephen; Iskar, Murat; Wolf, Stephan; Buchhalter, Ivo; Esteller, Manel; Lawerenz, Christian; Twardziok, Sven; Zapatka, Marc; Hovestadt, Volker; Schlesner, Matthias; Schulz, Marcel H.; Hoffmann, Steve; Gerhauser, Clarissa; Walter, Jorn; Hartmann, Mark; Lipka, Daniel B.; Assenov, Yassen; Bock, Christoph; Plass, Christoph; Toth, Reka; Lutsik, Pavlo
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Multi-omics protein signaling networks identify sex-specific therapeutic candidates in lung adenocarcinoma
err2025-09-30
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errChen Chen; Enakshi Saha; Jonas Fischer; Marouen Ben Guebila; Viola Fanfani; Katherine H. Shutta; Megha Padi; Kimberly Glass; Dawn L. DeMeo; Camila M. Lopes-Ramos; John Quackenbush
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Gene regulatory networks reveal sex difference in lung adenocarcinoma
err2024-08-06
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errSaha, Enakshi; Ben Guebila, Marouen; Fanfani, Viola; Fischer, Jonas; Shutta, Katherine H.; Mandros, Panagiotis; DeMeo, Dawn L.; Quackenbush, John; Lopes-Ramos, Camila M.
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Biologically informed NeuralODEs for genome-wide regulatory dynamics
err2024-05-21
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errHossain, Intekhab; Fanfani, Viola; Fischer, Jonas; Quackenbush, John; Burkholz, Rebekka
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Integrative analysis of single-cell expression data reveals distinct regulatory states in bidirectional promoters
err2018-11-10
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errArdakani, Fatemeh Behjati; Kattler, Kathrin; Nordstroem, Karl; Gasparoni, Nina; Gasparoni, Gilles; Fuchs, Sarah; Sinha, Anupam; Barann, Matthias; Ebert, Peter; Fischer, Jonas; Hutter, Barbara; Zipprich, Gideon; Imbusch, Charles D.; Felder, Baerbel; Eils, Juergen; Brors, Benedikt; Lengauer, Thomas; Manke, Thomas; Rosenstiel, Philip; Walter, Joern; Schulz, Marcel H.
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