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John Quackenbush

harvard t.h. chan school of public health

107H-index
702Paper Count
7.4WCitation Count
Published Papers 186
Publication Date
Leveraging Artificial Intelligence in Allergy, Asthma, and Immunology With Environmental Exposures
err2026-06-03
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errThinh H. Nguyen; Cezmi Akdis; Andrea Baccarelli; Sudipto Banerjee; Rohan Tan Bhowmik; Brent Coull; Marissa L. Childs; Luigi Cao Pinna; Christopher D. Golden; Thomas Hartung; Benjamin Q. Huynh; Abhinav Kaushik; Oladimeji Mudele; Wanda Phipatanakul; Chirag J. Patel; Bernardo Sousa Pinto; John Quackenbush; Vanitha Sampath; Jaime Toney; Meiliu Wu; Michelle A. Williams; Marsha Wills-Karp; Mohamed H. Shamji; Kari C. Nadeau
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Multi-omics protein signaling networks identify sex-specific therapeutic candidates in lung adenocarcinoma
err2025-09-30
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errChen Chen; Enakshi Saha; Jonas Fischer; Marouen Ben Guebila; Viola Fanfani; Katherine H. Shutta; Megha Padi; Kimberly Glass; Dawn L. DeMeo; Camila M. Lopes-Ramos; John Quackenbush
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The Importance of Regulatory Network Structure for Complex Trait Heritability and Evolution
err2025-08-01
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PREAI
errStone, Katherine L.; Platig, John; Quackenbush, John; Fagny, Maud
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Aging-associated alterations in gene regulatory networks associate with risk, prognosis and response to therapy in lung adenocarcinoma
err2025-07-09
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errEnakshi Saha; Marouen Ben Guebila; Viola Fanfani; Katherine H. Shutta; Dawn L. DeMeo; John Quackenbush; Camila M. Lopes-Ramos
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Reproducible processing of TCGA regulatory networks
err2025-01-01
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errFanfani, Viola; Shutta, Katherine H.; Mandros, Panagiotis; Fischer, Jonas; Saha, Enakshi; Micheletti, Soel; Chen, Chen; Ben guebila, Marouen; Lopes-Ramos, Camila M.; Quackenbush, John
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Sex-Biased Regulation of Extracellular Matrix Genes in Chronic Obstructive Pulmonary Disease
err2025-01-01
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PREAI
errLopes-Ramos, Camila M.; Shutta, Katherine H.; Ryu, Min Hyung; Huang, Yichen; Saha, Enakshi; Ziniti, John; Chase, Robert; Hobbs, Brian D.; Yun, Jeong H.; Castaldi, Peter; Hersh, Craig P.; Glass, Kimberly; Silverman, Edwin K.; Quackenbush, John; Demeo, Dawn L.
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Spatial Cellular Networks from omics data with SpaCeNet
err2024-09-04
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PREAI
errSchrod, Stefan; Lueck, Niklas; Lohmayer, Robert; Solbrig, Stefan; Voelkl, Dennis; Wipfler, Tina; Shutta, Katherine H.; Ben Guebila, Marouen; Schaefer, Andreas; Beissbarth, Tim; Zacharias, Helena U.; Oefner, Peter J.; Quackenbush, John; Altenbuchinger, Michael
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Gene regulatory networks reveal sex difference in lung adenocarcinoma
err2024-08-06
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errSaha, Enakshi; Ben Guebila, Marouen; Fanfani, Viola; Fischer, Jonas; Shutta, Katherine H.; Mandros, Panagiotis; DeMeo, Dawn L.; Quackenbush, John; Lopes-Ramos, Camila M.
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Biologically informed NeuralODEs for genome-wide regulatory dynamics
err2024-05-21
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errHossain, Intekhab; Fanfani, Viola; Fischer, Jonas; Quackenbush, John; Burkholz, Rebekka
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Unveiling sex differences in lung adenocarcinoma through multi-omics integrative protein signaling networks
err2024-03-22
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PREAI
errChen, Chen; Saha, Enakshi; Demeo, Dawn L.; Quackenbush, John; Lopes-Ramos, Camila M.
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The Network Zoo: a multilingual package for the inference and analysis of gene regulatory networks
err2023-03-09
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errBen Guebila, Marouen; Wang, Tian; Lopes-Ramos, Camila M. M.; Fanfani, Viola; Weighill, Des; Burkholz, Rebekka; Schlauch, Daniel; Paulson, Joseph N. N.; Altenbuchinger, Michael; Shutta, Katherine H. H.; Sonawane, Abhijeet R. R.; Lim, James; Calderer, Genis; van IJzendoorn, David G. P.; Morgan, Daniel; Marin, Alessandro; Chen, Cho-Yi; Song, Qi; Saha, Enakshi; DeMeo, Dawn L. L.; Padi, Megha; Platig, John; Kuijjer, Marieke L. L.; Glass, Kimberly; Quackenbush, John
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DRAGON: Determining Regulatory Associations using Graphical models on multi-Omic Networks
err2022-12-19
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errShutta, Katherine H.; Weighill, Deborah; Burkholz, Rebekka; Ben Guebila, Marouen; DeMeo, Dawn L.; Zacharias, Helena U.; Quackenbush, John; Altenbuchinger, Michael
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Connectivity in eQTL networks dictates reproducibility and genomic properties
err2022-05-01
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errGaynor, Sheila M.; Fagny, Maud; Lin, Xihong; Platig, John; Quackenbush, John
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An online notebook resource for reproducible inference, analysis and publication of gene regulatory networks
err2022-04-22
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errBen Guebila, Marouen; Weighill, Deborah; Lopes-Ramos, Camila M.; Burkholz, Rebekka; Pop, Romana T.; Palepu, Kalyan; Shapoval, Mia; Fagny, Maud; Schlauch, Daniel; Glass, Kimberly; Altenbuchinger, Michael; Kuijjer, Marieke L.; Platig, John; Quackenbush, John
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Predicting genotype-specific gene regulatory networks
err2022-02-22
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errOAAI
errWeighill, Deborah; Ben Guebila, Marouen; Glass, Kimberly; Quackenbush, John; Platig, John
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gpuZoo: Cost-effective estimation of gene regulatory networks using the Graphics Processing Unit
err2022-02-08
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errBen Guebila, Marouen; Morgan, Daniel C.; Glass, Kimberly; Kuijjer, Marieke L.; DeMeo, Dawn L.; Quackenbush, John
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Constructing gene regulatory networks using epigenetic data
err2021-12-09
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errSonawane, Abhijeet Rajendra; DeMeo, Dawn L.; Quackenbush, John; Glass, Kimberly
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GRAND: a database of gene regulatory network models across human conditions
err2021-09-11
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errBen Guebila, Marouen; Lopes-Ramos, Camila M.; Weighill, Deborah; Sonawane, Abhijeet Rajendra; Burkholz, Rebekka; Shamsaei, Behrouz; Platig, John; Glass, Kimberly; Kuijjer, Marieke L.; Quackenbush, John
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Regulatory Network of PD1 Signaling Is Associated with Prognosis in Glioblastoma Multiforme
err2021-09-07
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errLopes-Ramos, Camila M.; Belova, Tatiana; Brunner, Tess H.; Ben Guebila, Marouen; Osorio, Daniel; Quackenbush, John; Kuijjer, Marieke L.
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Analysis of morphological characteristics of IDHmutant/wildtype brain tumors using whole-lesion phenotype analysis
err2021-06-24
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errSnyder, James M.; Huang, Raymond Y.; Bai, Harrison; Rao, Vikram R.; Cornes, Susannah; Barnholtz-Sloan, Jill S.; Gutman, David; Fasano, Rebecca; Van Meir, Erwin G.; Brat, Daniel; Eschbacher, Jennifer; Quackenbush, John; Wen, Patrick Y.; Lee, Jong Woo
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