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Integrated analyses highlight interactions between the three-dimensional genome and DNA, RNA and epigenomic alterations in metastatic prostate cancer Zhao, Shuang G.; Bootsma, Matthew; Zhou, Stanley; Shrestha, Raunak; Moreno-Rodriguez, Thaidy; Lundberg, Arian; Pan, Chu; Arlidge, Christopher; Hawley, James R.; Foye, Adam; Weinstein, Alana S.; Sjostrom, Martin; Zhang, Meng; Li, Haolong; Chesner, Lisa N.; Rydzewski, Nicholas R.; Helzer, Kyle T.; Shi, Yue; Bailey, Adina M.; Zhang, Li; Beer, Tomasz M.; Thomas, George; Chi, Kim N.; Gleave, Martin; Zoubeidi, Amina; Reiter, Robert E.; Rettig, Matthew B.; Witte, Owen; Bose, Rohit; Huang, Franklin W.; Fong, Larry; Lara, Primo N.; Evans, Christopher P.; Huang, Jiaoti; Lynch, Molly; Dehm, Scott M.; Lang, Joshua M.; Alumkal, Joshi J.; He, Hansen H.; Wyatt, Alexander W.; Aggarwal, Rahul; Zwart, Wilbert; Small, Eric J.; Quigley, David A.; Lupien, Mathieu; Feng, Felix Y. Share Save
An Atlas of Accessible Chromatin in Advanced Prostate Cancer Reveals the Epigenetic Evolution during Tumor Progression Shrestha, Raunak; Chesner, Lisa N.; Zhang, Meng; Zhou, Stanley; Foye, Adam; Lundberg, Arian; Weinstein, Alana S.; Sjoestroem, Martin; Zhu, Xiaolin; Moreno-Rodriguez, Thaidy; Li, Haolong; Alumkal, Joshi J.; Aggarwal, Rahul; Small, Eric J.; Lupien, Mathieu; Quigley, David A.; Feng, Felix Y. Share Save
An atlas of accessible chromatin in advanced prostate cancer Shrestha, Raunak; Chesner, Lisa N.; Zhang, Meng; Zhou, Stanley; Foye, Adam; Lundberg, Arian; Weinstein, Alana S.; Sjostrom, Martin; Zhu, Xiaolin; Moreno-Rodriguez, Thaidy; Li, Haolong; Alumkal, Joshi J.; Aggarwal, Rahul; Small, Eric J.; Lupien, Mathieu; Quigley, David A.; Feng, Felix Y. Share Save
The Genomic and Epigenomic Landscape of Double-Negative Metastatic Prostate Cancer Lundberg, Arian; Zhang, Meng; Aggarwal, Rahul; Li, Haolong; Zhang, Li; Foye, Adam; Sjostrom, Martin; Chou, Jonathan; Chang, Kevin; Moreno-Rodriguez, Thaidy; Shrestha, Raunak; Baskin, Avi; Zhu, Xiaolin; Weinstein, Alana S.; Younger, Noah; Alumkal, Joshi J.; Beer, Tomasz M.; Chi, Kim N.; Evans, Christopher P.; Gleave, Martin; Lara, Primo N.; Reiter, Rob E.; Retting, Matthew B.; Witte, Owen N.; Wyatt, Alexander W.; Feng, Felix Y.; Small, Eric J.; Quigley, David A. Share Save
Convergent evolution in DNA repair-deficient mCRPC in response to targeted therapy Moreno, Thaidy; Zhang, Meng; Lundberg, Arian; Shrestha, Raunak; Sjostrom, Martin; Pasam, Anu; Foye, Adam; Trigos, Anna; Feng, Felix; Sandhu, Shahneen; Quigley, David A. Share Save
Genomic and epigenomic drivers of double-negative metastatic prostate cancer Lundberg, Arian; Zhang, Meng; Aggarwal, Rahul R.; Li, Haolong; Zhang, Li; Foye, Adam; Sjostrom, Martin; Chou, Jonathan; Chang, Kevin; Moreno-Rodriguez, Thaidy; Shrestha, Raunak; Baskin, Avi; Zhu, Xiaolin; Weinstein, Alana S.; Younger, Noah; Alumkal, Joshi J.; Beer, Tomasz M.; Chi, Kim N.; Evans, Christopher P.; Gleave, Martin; Lara, Primo N.; Reiter, Robert E.; Rettig, Matthew B.; Witte, Owen N.; Wyatt, Alexander W.; Feng, Felix Y.; Small, Eric J.; Quigley, David A. Share Save
Alternative promoter usage is linked to transcriptional and epigenetic alterations during prostate cancer progression Zhang, Meng; Sjostrom, Martin; Shrestha, Raunak; Lundberg, Arian; Moreno-Rodriguez, Thaidy; Foye, Adam; Dang, Ha X.; Alumkal, Joshi J.; Aggarwal, Rahul; Small, Eric J.; Maher, Christopher A.; Feng, Felix Y.; Quigley, David Share Save
Human Brain Microvascular Endothelial Cells Exposure to SARS-CoV-2 Leads to Inflammatory Activation through NF-κB Non-Canonical Pathway and Mitochondrial Remodeling Motta, Carolline Soares; Torices, Silvia; da Rosa, Barbara Gomes; Marcos, Anne Caroline; Alvarez-Rosa, Liandra; Siqueira, Michele; Moreno-Rodriguez, Thaidy; Matos, Aline da Rocha; Caetano, Braulia Costa; Martins, Jessica Santa Cruz de Carvalho; Gladulich, Luis; Loiola, Erick; Bagshaw, Olivia R. M.; Stuart, Jeffrey A. A.; Siqueira, Marilda M. M.; Stipursky, Joice; Toborek, Michal; Adesse, Daniel Share Save
The 5-Hydroxymethylcytosine Landscape of Prostate Cancer Sjostrom, Martin; Zhao, Shuang G.; Levy, Samuel; Zhang, Meng; Ning, Yuhong; Shrestha, Raunak; Lundberg, Arian; Herberts, Cameron; Foye, Adam; Aggarwal, Rahul; Hua, Junjie T.; Li, Haolong; Bergamaschi, Anna; Maurice-Dror, Corinne; Maheshwari, Ashutosh; Chen, Sujun; Ng, Sarah W. S.; Ye, Wenbin; Petricca, Jessica; Fraser, Michael; Chesner, Lisa; Perry, Marc D.; Moreno-Rodriguez, Thaidy; Chen, William S.; Alumkal, Joshi J.; Chou, Jonathan; Morgans, Alicia K.; Beer, Tomasz M.; Thomas, George, V; Gleave, Martin; Lloyd, Paul; Phillips, Tierney; McCarthy, Erin; Haffner, Michael C.; Zoubeidi, Amina; Annala, Matti; Reiter, Robert E.; Rettig, Matthew B.; Witte, Owen N.; Fong, Lawrence; Bose, Rohit; Huang, Franklin W.; Luo, Jianhua; Bjartell, Anders; Lang, Joshua M.; Mahajan, Nupam P.; Lara, Primo N.; Evans, Christopher P.; Tran, Phuoc T.; Posadas, Edwin M.; He, Chuan; Cui, Xiao-Long; Huang, Jiaoti; Zwart, Wilbert; Gilbert, Luke A.; Maher, Christopher A.; Boutros, Paul C.; Chi, Kim N.; Ashworth, Alan; Small, Eric J.; He, Housheng H.; Wyatt, Alexander W.; Quigley, David A.; Feng, Felix Y. Share Save
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ARID2 deficiency promotes tumor progression and is associated with higher sensitivity to chemotherapy in lung cancer Moreno, Thaidy; Monterde, Beatriz; Gonzalez-Silva, Laura; Betancor-Fernandez, Isabel; Revilla, Carlos; Agraz-Doblas, Antonio; Freire, Javier; Isidro, Pablo; Quevedo, Laura; Blanco, Rosa; Montes-Moreno, Santiago; Cereceda, Laura; Astudillo, Aurora; Casar, Berta; Crespo, Piero; Morales Torres, Cristina; Scaffidi, Paola; Gomez-Roman, Javier; Salido, Eduardo; Varela, Ignacio Share Save
Unraveling the cellular origin and clinical prognostic markers of infant B-cell acute lymphoblastic leukemia using genome-wide analysis Agraz-Doblas, Antonio; Bueno, Clara; Bashford-Rogers, Rachael; Roy, Anindita; Schneider, Pauline; Bardini, Michela; Ballerini, Paola; Cazzaniga, Gianni; Moreno, Thaidy; Revilla, Carlos; Gut, Marta; Valsecchi, Maria G.; Roberts, Irene; Pieters, Rob; De Lorenzo, Paola; Varela, Ignacio; Menendez, Pablo; Stam, Ronald W. Share Save
JAK2 V617F hematopoietic clones are present several years prior to MPN diagnosis and follow different expansion kinetics McKerrell, Thomas; Park, Naomi; Chi, Jianxiang; Collord, Grace; Moreno, Thaidy; Ponstingl, Hannes; Dias, Joao M. L.; Gerasimou, Petroula; Melanthiou, Kiki; Prokopiou, Chrystalla; Antoniades, Marios; Varela, Ignacio; Costeas, Paul A.; Vassiliou, George S. Share Save
Genomic characterization of the role of chromatin remodelling genes in human cancer Moreno, T.; Revilla, C.; Montes, S.; Cereceda, L.; Salido, E.; Astudillo, A.; Isidro, P.; Esposito, I.; Ramirez, M.; Varela, I. Share Save
Leukemia-Associated Somatic Mutations Drive Distinct Patterns of Age-Related Clonal Hemopoiesis McKerrell, Thomas; Park, Naomi; Moreno, Thaidy; Grove, Carolyn S.; Ponstingl, Hannes; Stephens, Jonathan; Crawley, Charles; Craig, Jenny; Scott, Mike A.; Hodkinson, Clare; Baxter, Joanna; Rad, Roland; Forsyth, Duncan R.; Quail, Michael A.; Zeggini, Eleftheria; Ouwehand, Willem; Varela, Ignacio; Vassiliou, George S. Share Save
Detailed molecular characterisation of acute myeloid leukaemia with a normal karyotype using targeted DNA capture Conte, N.; Varela, I.; Grove, C.; Manes, N.; Yusa, K.; Moreno, T.; Segonds-Pichon, A.; Bench, A.; Gudgin, E.; Herman, B.; Bolli, N.; Ellis, P.; Haddad, D.; Costeas, P.; Rad, R.; Scott, M.; Huntly, B.; Bradley, A.; Vassiliou, G. S. Share Save
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