arrow
Back
A

Aindrila Mukhopadhyay

lawrence berkeley national laboratory

58H-index
265Paper Count
1.2WCitation Count
Published Papers 135
Publication Date
Nitrene generation and transfer for unnatural biosynthesis in living cells
err2026-08-18
err0
errOAAI
errIsaac Donnell; Andrew Quest; Jeremy Tang; Maodun Zhang; Brandon Bloomer; Douglas S. Clark; Aindrila Mukhopadhyay; John Hartwig; Jay D. Keasling
errShare
errSave
Simultaneous optimization of lignocellulosic sugar catabolism via systematic laboratory evolution under complex selection pressure
err2026-07-29
err0
errOAAI
errSunghwa Woo; Hyun Gyu Lim; Brenna Norton-Baker; Torrey M. Lind; Nathan E. Gladden; Yan Chen; Ciara de Venecia; Thomas Eng; Christopher W. Johnson; Aindrila Mukhopadhyay; Christopher J. Petzold; Adam M. Guss; Gregg T. Beckham; Adam M. Feist
errShare
errSave
Assembly and Reactions of Artificial Metalloenzymes in Streptomyces albus
err2026-06-03
err0
PREAI
errSukriyo Chakraborty; Soonkyu Hwang; Jing Huang; Dongping Chen; Yan Chen; Christopher J. Petzold; Douglas S. Clark; Aindrila Mukhopadhyay; Jay D. Keasling; John F. Hartwig
errShare
errSave
TridentSynth: a webtool for the retrosynthesis of molecules using chimeric type I polyketide synthases and chemoenzymatic pathways
err2026-05-11
err0
errOAAI
errYash Chainani; Margaret Guilarte-Silva; Kenna Roberts; Stefan Pate; Geoffrey Bonnanzio; Keith E J Tyo; Aindrila Mukhopadhyay; Jay D Keasling; Hector Garcia Martin; Linda J Broadbelt; Tyler W H Backman
errShare
errSave
Influence of titer, rate, yield, and scale on the cost and life-cycle emissions of biomanufacturing
err2026-04-17
err0
errOAAI
errNawa Raj Baral; Minliang Yang; Deepanwita Banerjee; Aindrila Mukhopadhyay; Blake A. Simmons; Steven W. Singer; Jay D. Keasling; Corinne D. Scown
errShare
errSave
Origin of replication discovery for environmentally isolated Pantoea strain enables expression of heterologous proteins, pathways and products
err2026-02-17
err0
errOAAI
errAlex Codik; Ankita Kothari; Hualan Liu; Benjamin L. Weinberg; Trenton K. Owens; Aparajitha Srinivasan; Alex Rivier; Thomas Eng; Adam P. Arkin; Adam M. Deutschbauer; Aindrila Mukhopadhyay
errShare
errSave
Automation and machine learning drive rapid optimization of isoprenol production in Pseudomonas putida
err2025-12-13
err0
errOAAI
errDavid N. Carruthers; Patrick C. Kinnunen; Yuerong Li; Yan Chen; Jennifer W. Gin; Ian S. Yunus; William R. Galliard; Stephen Tan; Tijana Radivojevic; Paul D. Adams; Anup K. Singh; Jess Sustarich; Christopher J. Petzold; Aindrila Mukhopadhyay; Hector Garcia Martin; Taek Soon Lee
errShare
errSave
Biosensor-driven strain engineering reveals key cellular processes for maximizing isoprenol production in Pseudomonas putida
err2025-10-24
err0
PREAI
errJavier Menasalvas; Shawn Kulakowski; Yan Chen; Jennifer W. Gin; Emine Akyuz Turumtay; Nawa Raj Baral; Morgan A. Apolonio; Alex Rivier; Ian S. Yunus; Megan E. Garber; Corinne D. Scown; Paul D. Adams; Taek Soon Lee; Ian K. Blaby; Edward E. K. Baidoo; Christopher J. Petzold; Thomas Eng; Aindrila Mukhopadhyay
errShare
errSave
Differences in GenBank and RefSeq annotations may affect genomics data interpretation for Pseudomonas putida KT2440
errMSPHERE
IF3.1
err2025-10-01
err0
PREAI
errde Siqueira, Guilherme Marcelino Viana; Eng, Thomas; Mukhopadhyay, Aindrila; Guazzaroni, Maria-Eugenia
errShare
errSave
RB-TnSeq elucidates dicarboxylic-acid-specific catabolism in β-proteobacteria for improved plastic monomer upcycling
err2025-09-01
err0
PREAI
errPearson, Allison N.; Lynch, Julie M.; Ho, Cindy N.; Hudson, Graham A.; Roberts, Jacob B.; Menasalvas, Javier; Vilchez, Aaron A.; Incha, Matthew R.; Schmidt, Matthias; Mukhopadhyay, Aindrila; Deutschbauer, Adam M.; Thompson, Mitchell G.; Shih, Patrick M.; Keasling, Jay D.
errShare
errSave
FluxRETAP: a REaction TArget Prioritization genome-scale modeling technique for selecting genetic targets
err2025-09-01
err1
errOAAI
errCzajka, Jeffrey J.; Kim, Joonhoon; Tang, Yinjie J.; Pomraning, Kyle R.; Mukhopadhyay, Aindrila; Martin, Hector Garcia
errShare
errSave
Microbial solutions for climate change require global partnership
errMBIO
IF4.7
err2025-05-14
err0
errOAAI
errLennon, J. T.; Rappuoli, R.; Bloom, D. E.; Brooke, C.; Burckhardt, R. M.; Dangour, A. D.; Egamberdieva, D.; Gronvall, G. K.; Lawley, T. D.; Morhard, R.; Mukhopadhyay, A.; Peixoto, R. S.; Silver, P. A.; Sperandio, V.; Stein, L. Y.; Nguyen, N. K.
errShare
errSave
Alternate routes to acetate tolerance lead to varied isoprenol production from mixed carbon sources in Pseudomonas putida
err2025-03-01
err0
errOAAI
errde Siqueira, Guilherme M. V.; Srinivasan, Aparajitha; Chen, Yan; Gin, Jennifer W.; Petzold, Christopher J.; Lee, Taek Soon; Guazzaroni, Maria-Eugenia; Eng, Thomas; Mukhopadhyay, Aindrila
errShare
errSave
Microbial Pathways for Cost-Effective Low-Carbon Renewable Indigoidine
err2025-02-14
err0
PREAI
errBaral, NR; Banerjee, D; Eng, T; Simmons, BA; Mukhopadhyay, A; Scown, CD
errShare
errSave
Addressing genome scale design tradeoffs in Pseudomonas putida for bioconversion of an aromatic carbon source
err2025-01-14
err0
errOAAI
errBanerjee, Deepanwita; Menasalvas, Javier; Chen, Yan; Gin, Jennifer W.; Baidoo, Edward E. K.; Petzold, Christopher J.; Eng, Thomas; Mukhopadhyay, Aindrila
errShare
errSave
Assessing horizontal gene transfer in the rhizosphere of Brachypodium distachyon using fabricated ecosystems (EcoFABs)
err2024-11-20
err0
errOAAI
errPriya, Shweta; Rossbach, Silvia; Eng, Thomas; Lin, Hsiao-Han; Andeer, Peter F.; Mortimer, Jenny C.; Northen, Trent R.; Mukhopadhyay, Aindrila
errShare
errSave
Desiccated Cyanobacteria Serve As Efficient Plasmid DNA Carriers in Space Flight
err2024-08-16
err0
errOAAI
errKakouridis, Anne; Diamond, Spencer; Eng, Thomas; Mills, Heath J.; Holzhaus, Olivia Gamez; Summers, Michael L.; Garcia-Pichel, Ferran; Mukhopadhyay, Aindrila
errShare
errSave
Sustainable production of 2,3,5,6-Tetramethylpyrazine at high titer in engineered Corynebacterium glutamicum
err2024-07-16
err3
errOAAI
errSrinivasan, Aparajitha; Chen-Xiao, Kevin; Banerjee, Deepanwita; Oka, Asun; Pidatala, Venkataramana R.; Eudes, Aymerick; Simmons, Blake A.; Eng, Thomas; Mukhopadhyay, Aindrila
errShare
errSave
Systematic engineering for production of anti-aging sunscreen compound in Pseudomonas putida
err2024-07-01
err1
errOAAI
errYunus, Ian S.; Hudson, Graham A.; Chen, Yan; Gin, Jennifer W.; Kim, Joonhoon; Baidoo, Edward E. K.; Petzold, Christopher J.; Adams, Paul D.; Simmons, Blake A.; Mukhopadhyay, Aindrila; Keasling, Jay D.; Lee, Taek Soon
errShare
errSave
Perspective on Lignin Conversion Strategies That Enable Next Generation Biorefineries
err2024-04-26
err3
errOAAI
errShrestha, Shilva; Goswami, Shubhasish; Banerjee, Deepanwita; Garcia, Valentina; Zhou, Elizabeth; Olmsted, Charles N.; Majumder, Erica L. -W.; Kumar, Deepak; Awasthi, Deepika; Mukhopadhyay, Aindrila; Singer, Steven W.; Gladden, John M.; Simmons, Blake A.; Choudhary, Hemant
errShare
errSave