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Bernhard Ø. Palsson

Technical University of Denmark

166H-index
1.2KPaper Count
11.1WCitation Count
Published Papers 435
Publication Date
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Annotating the pangenome reveals the diversity in the genetic basis for metabolic enzymes
errScience Advances
IF12.5
err2026-07-01
err0
errOAAI
errOmid Ardalani; Patrick V. Phaneuf; Kalpathy J. Krishnan; David Pride; Lars K. Nielsen; Bernhard O. Palsson
errShare
errSave
Gut microbial ethanol metabolism contributes to auto-brewery syndrome in an observational cohort
errNature Microbiology
IF19.4
err2026-01-08
err0
PREAI
errCynthia L. Hsu; Shikha Shukla; Linton Freund; Annie C. Chou; Yongqiang Yang; Ryan Bruellman; Fernanda Raya Tonetti; Noemí Cabré; Susan Mayo; Hyun Gyu Lim; Valeria Magallan; Barbara J. Cordell; Sonja Lang; Münevver Demir; Peter Stärkel; Cristina Llorente; Bernhard O. Palsson; Chitra Mandyam; Brigid S. Boland; Elizabeth Hohmann; Bernd Schnabl
errShare
errSave
Approaches for accelerating microbial gene function discovery using artificial intelligence
errNature Microbiology
IF19.4
err2026-01-07
err0
PREAI
errBernhard O. Palsson; Sang Yup Lee; Gi Bae Kim
errShare
errSave
Rare metabolic gene essentiality is a determinant of microniche adaptation in Eschherichia coli
errPLOS PATHOGENS
IF4.9
err2025-12-08
err0
PREAI
errArdalani, Omid; Phaneuf, Patrick V.; Krishnan, Jayanth; Chauhan, Siddharth M.; Pride, David; Zielinski, Daniel C.; Monk, Jonathan M.; Nielsen, Lars K.; Palsson, Bernhard O.
errShare
errSave
Structure of the Enterobacter pan-genome is revealed using machine learning
errMicrobiology Spectrum
IF3.8
err2025-12-01
err0
PREAI
errBurrows, Joshua T.; Li, Gaoyuan; Monk, Jonathan M.; Chauhan, Siddharth M.; Palsson, Bernhard O.
errShare
errSave
Transcriptional regulatory networks of the human gut symbiont Bacteroides thetaiotaomicron are uncovered using machine learning
errNUCLEIC ACIDS RESEARCH
IF13.1
err2025-11-11
err0
errOAAI
errKim, Kangsan; Choe, Donghui; Kim, Sun Chang; Yim, Sung Sun; Jeong, Ki Jun; Palsson, Bernhard; Cho, Suhyung; Cho, Byung-Kwan
errShare
errSave
QSProteome: a community-driven interactive platform for large-scale exploration and evaluation of predicted protein complex structures
errNUCLEIC ACIDS RESEARCH
IF13.1
err2025-10-01
err1
errOAAI
errCatoiu, Edward A.; Kambo, Delina; Rodriguez, Brianna; Vear, Krista; Wang, Ziheng; Akpata, June; Shah, Jaladhi; Ayoub, Rayyan; Hofmann, Matthew; Ananda, Keerthana; Tantry, Avani; Gupta, Ishita; Anwyl, Robin; Faucher, Carter; Nichols, Jordan; Ton, Brian; Marchal, Lorenzo O.; Palsson, Bernhard O.
errShare
errSave
Laboratory Evolution Reveals Transcriptional Mechanisms Underlying Thermal Adaptation of Escherichia coli
errGENOME BIOLOGY AND EVOLUTION
IF2.8
err2025-10-01
err0
PREAI
errRychel, Kevin; Chen, Ke; Catoiu, Edward A.; Olson, Elina; Sandberg, Troy E.; Gao, Ye; Xu, Sibei; Hefner, Ying; Szubin, Richard; Patel, Arjun; Feist, Adam M.; Palsson, Bernhard O.
errShare
errSave
PMkbase (version 1.0): an interactive web-based tool for tracking bacterial metabolic traits using phenotype microarrays made interoperable with sequence information and visualizing/processing PM data
errMICROBIOLOGY SPECTRUM
IF3.8
err2025-09-01
err0
PREAI
errKrishnan, K. Jayanth; Hefner, Ying; Szubin, Richard; Monk, Jonathan; Pride, David T.; Palsson, Bernhard
errShare
errSave
Microbial production of creatine using growth-coupled selection systems.
errMetabolic Engineering
IF6.8
err2025-07-23
err0
PREAI
errJinbei Li; Simon R. Krarup; Pascal Pieters; Tobias B. Alter; Paul Jacottin; Josefin Johnsen; Elsayed T. Mohamed; Thomas Harris; Linda Ahonen; Khem Bahadur Adhikari; Bernhard O. Palsson; Adam M. Feist; Lei Yang
errShare
errSave
Metabolic growth-coupling strategies for in vivo enzyme selection systems
errmetabolic engineering
IF4.1
err2025-06-01
err0
errOAAI
errAlter, Tobias B.; Pieters, Pascal A.; Lloyd, Colton J.; Feist, Adam M.; Oezdemir, Emre; Palsson, Bernhard O.; Zielinski, Daniel C.
errShare
errSave
Evolution-guided tolerance engineering of Pseudomonas putida KT2440 for production of the aviation fuel precursor isoprenol
errMetabolic Engineering
IF6.8
err2025-05-19
err0
PREAI
errHyun Gyu Lim; Aparajitha Srinivasan; Russel Menchavez; Ian S. Yunus; Myung Hyun Noh; Megan White; Yan Chen; Jennifer W. Gin; Bernhard O. Palsson; Taek Soon Lee; Christopher J. Petzold; Thomas Eng; Aindrila Mukhopadhyay; Adam M. Feist
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errSave
Decomposition of the pangenome matrix reveals a structure in gene distribution in the Escherichia coli species
errMSPHERE
IF3.1
err2025-01-28
err0
errOAAI
errChauhan, Siddharth M.; Ardalani, Omid; Hyun, Jason C.; Monk, Jonathan M.; Phaneuf, Patrick V.; Palsson, Bernhard O.
errShare
errSave
Revealing systematic changes in the transcriptome during the transition from exponential growth to stationary phase
errMSYSTEMS
IF4.6
err2025-01-21
err0
PREAI
errLim, Hyun Gyu; Gao, Ye; Rychel, Kevin; Lamoureux, Cameron; Lou, Xuwen A.; Palsson, Bernhard O.
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errSave
PanKB: An interactive microbial pangenome knowledgebase for research, biotechnological innovation, and knowledge mining
errNUCLEIC ACIDS RESEARCH
IF13.1
err2024-11-22
err0
errOAAI
errSun, Binhuan; Pashkova, Liubov; Pieters, Pascal Aldo; Harke, Archana Sanjay; Mohite, Omkar Satyavan; Santos, Alberto; Zielinski, Daniel C.; Palsson, Bernhard O.; Phaneuf, Patrick Victor
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errSave
Diversity of Transcriptional Regulatory Adaptation in E. coli
errMOLECULAR BIOLOGY AND EVOLUTION
IF5.3
err2024-11-12
err0
errOAAI
errDalldorf, Christopher; Hefner, Ying; Szubin, Richard; Johnsen, Josefin; Mohamed, Elsayed; Li, Gaoyuan; Krishnan, Jayanth; Feist, Adam M.; Palsson, Bernhard O.; Zielinski, Daniel C.
errShare
errSave
iModulonDB 2.0: dynamic tools to facilitate knowledge-mining and user-enabled analyses of curated transcriptomic datasets
errNUCLEIC ACIDS RESEARCH
IF13.1
err2024-11-04
err0
errOAAI
errCatoiu, Edward A.; Krishnan, Jayanth; Li, Gaoyuan; Lou, Xuwen A.; Rychel, Kevin; Yuan, Yuan; Bajpe, Heera; Patel, Arjun; Choe, Donghui; Shin, Jongoh; Burrows, Joshua; Phaneuf, Patrick, V; Zielinski, Daniel C.; Palsson, Bernhard O.
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errSave
Diagnosis and mitigation of the systemic impact of genome reduction in Escherichia coli DGF-298
errMBIO
IF4.7
err2024-10-16
err0
errOAAI
errChampie, Antoine; Lachance, Jean-Christophe; Sastry, Anand; Matteau, Dominick; Lloyd, Colton J.; Grenier, Frederic; Lamoureux, Cameron R.; Jeanneau, Simon; Feist, Adam M.; Jacques, Pierre-Etienne; Palsson, Bernhard O.; Rodrigue, Sebastien
errShare
errSave
Genome-scale models in human metabologenomics
errNATURE REVIEWS GENETICS
IF52
err2024-09-19
err2
PREAI
errMardinoglu, Adil; Palsson, Bernhard O.
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errSave
A genome-scale metabolic model of a globally disseminated hyperinvasive M1 strain of Streptococcus pyogenes
errMSYSTEMS
IF4.6
err2024-09-17
err1
errOAAI
errHirose, Yujiro; Zielinski, Daniel C.; Poudel, Saugat; Rychel, Kevin; Baker, Jonathon L.; Toya, Yoshihiro; Yamaguchi, Masaya; Heinken, Almut; Thiele, Ines; Kawabata, Shigetada; Palsson, Bernhard O.; Nizet, Victor
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Research Directions

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Co-authors
Cooperation Journals
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Rob Knight
H-index: 255 · Papers: 1.8K
D
Derek R. Lovley
H-index: 181 · Papers: 695
J
Jens Nielsen
H-index: 161 · Papers: 1.5K
R
Richard Smith
H-index: 160 · Papers: 4.8W
H
Hreinn Stefánsson
H-index: 149 · Papers: 635
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