Not logged in Genome-wide analyses of cell-free DNA for therapeutic monitoring of patients with pancreatic cancer Hruban, Carolyn; Bruhm, Daniel C.; Chen, Inna M.; Koul, Shashikant; Annapragada, Akshaya V.; Vulpescu, Nicholas A.; Short, Sarah; Theile, Susann; Boyapati, Kavya; Alipanahi, Bahar; Skidmore, Zachary L.; Leal, Alessandro; Cristiano, Stephen; Adleff, Vilmos; Johannsen, Julia S.; Scharpf, Robert B.; Foda, Zachariah H.; Phallen, Jillian; Velculescu, Victor E. Share Save
DNA methylation and gene expression as determinants of genome-wide cell-free DNA fragmentation Noe, Michael; Mathios, Dimitrios; Annapragada, Akshaya V.; Koul, Shashikant; Foda, Zacharia H.; Medina, Jamie E.; Cristiano, Stephen; Cherry, Christopher; Bruhm, Daniel C.; Niknafs, Noushin; Adleff, Vilmos; Ferreira, Leonardo; Easwaran, Hari; Baylin, Stephen; Phallen, Jillian; Scharpf, Robert B.; Velculescu, Victor E. Share Save
DNA methylation and gene expression as determinants of genome-wide cell-free DNA fragmentation Noe, Michael; Annapragada, Akshaya V.; Foda, Zachariah H.; Medina, Jamie E.; Mathios, Dimitrios; Cristiano, Stephen; Cherry, Christopher; Bruhm, Daniel C.; Niknafs, Noushin; Adleff, Vilmos; Ferreira, Leonardo; Easwaran, Hari; Baylin, Stephen; Phallen, Jillian; Scharpf, Robert B.; Velculescu, Victor E. Share Save
Liquid biopsy approaches for monitoring metastatic pancreatic cancer in immunotherapy treated patients Hruban, Carolyn Anna; Chen, Inna; Bruhm, Daniel C.; Koul, Shashikant; Yao, Jennie; Theile, Susann; Boyapati, Kavya; Vulpescu, Nicholas A.; Annapragada, Akshaya; Ferreira, Leonardo; Cristiano, Stephen; Foda, Zachariah H.; Adleff, Vilmos; Johansen, Julia; Phallen, Jillian; Scharpf, Robert B.; Velculescu, Victor E. Share Save
Genome-wide repeat landscapes in cancer and cell-free DNA Annapragada, Akshaya; Niknafs, Noushin; White, James R.; Bruhm, Daniel C.; Cherry, Christopher; Medina, Jamie E.; Adleff, Vilmos; Hruban, Carolyn; Mathios, Dimitrios; Foda, Zachariah H.; Phallen, Jillian; Scharpf, Robert B.; Velculescu, Victor E. Share Save
Chromatin landscapes of colorectal cancer development and cfDNA fragmentation Vulpescu, Nicholas A.; Foda, Zachariah H.; Wisse, Pieter H.; Medina, Jamie E.; Adleff, Vilmos; Fijneman, Remond J.; Scharpf, Robert B.; Meijer, Gerrit A.; Carvalho, Beatriz; Velculescu, Victor E. Share Save
Comprehensive genomic and transcriptomic analyses capture the effects of epigenetic therapy priming on immune checkpoint blockade response in non-small cell lung cancer Landon, Blair V.; Marrone, Kristen A.; Topper, Michael J.; Annapragada, Akshaya; Tsai, Hua-Ling; Balan, Archana; Niknafs, Noushin; Cherry, Christopher; White, James R.; Pereira, Gavin; Adleff, Vilmos; Hu, Chen; Riemer, Joanne; Fitzpatrick, Margaret; Forde, Patrick; Hann, Christine L.; Kelly, Ronan J.; Ettinger, David S.; Levy, Benjamin; Nieva, Jorge; Herman, James; Velculescu, Victor E.; Baylin, Stephen; Brahmer, Julie; Anagnostou, Valsamo Share Save
Variation of cell-free DNA concentrations in liquid biopsies Short, Sarah; Annapragada, Akshaya V.; Medina, Jamie E.; Foda, Zachariah H.; Mathios, Dimitrios; Hruban, Carolyn; Chiao, Elaine J.; Boyapati, Kavya; Bartolomucci, Adrianna; Boyapati, Keerti; Adleff, Vilmos; Scharpf, Robert B.; Velculescu, Victor E.; Phallen, Jillian Share Save
Genome-wide repeat landscapes in cancer and cell-free DNA Annapragada, Akshaya V.; Niknafs, Noushin; White, James R.; Bruhm, Daniel C.; Cherry, Christopher; Medina, Jamie E.; Adleff, Vilmos; Hruban, Carolyn; Mathios, Dimitrios; Foda, Zachariah H.; Phallen, Jillian; Scharpf, Robert B.; Velculescu, Victor E. Share Save
Ultra-deep targeted sequencing of cell-free DNA and patient-matched white blood cells for treatment response evaluation in patients with metastatic colorectal cancer van 't Erve, Iris; Medina, Jamie E.; Leal, Alessandro; Papp, Eniko; Phallen, Jillian; Adleff, Vilmos; Chiao, Elaine Jiayuee; Arun, Adith S.; Bolhuis, Karen; Simmons, John K.; Karandikar, Aanavi; Valkenburg, Kenneth C.; Sausen, Mark; Angiuoli, Samuel V.; Scharpf, Robert B.; Punt, Cornelis J.; Meijer, Gerrit J.; Velculescu, Victor E.; Fijneman, Remond J. Share Save
Early detection of ovarian cancer using cell-free DNA fragmentomes Annapragada, Akshaya V.; Medina, Jamie E.; Lof, Pien; Mathios, Dimitrios; Foda, Zachariah H.; Noe, Michael; Short, Sarah; Bartolomucci, Adrianna; Bruhm, Daniel C.; Jung, Euihye; Canzoniero, Jenna; Niknafs, Noushin; Cristiano, Stephen; Adleff, Vilmos; Symecko, Heather; van de Broek, Daan; Baylin, Stephen B.; Press, Michael F.; Slamon, Dennis; Konecny, Gottfried; Domchek, Susan; Drapkin, Ronny; Phallen, Jillian; Scharpf, Robert B.; Lok, Christianne; Velculescu, Victor E. Share Save
Detecting Liver Cancer Using Cell-Free DNA Fragmentomes Foda, Zachariah H.; Annapragada, Akshaya, V; Boyapati, Kavya; Bruhm, Daniel C.; Vulpescu, Nicholas A.; Medina, Jamie E.; Mathios, Dimitrios; Cristiano, Stephen; Niknafs, Noushin; Luu, Harry T.; Goggins, Michael G.; Anders, Robert A.; Sun, Jing; Meta, Shruti H.; Thomas, David L.; Kirk, Gregory D.; Adleff, Vilmos; Phallen, Jillian; Scharpf, Robert B.; Kim, Amy K.; Velculescu, Victor E. Share Save
Detection and characterization of lung cancer using cell-free DNA fragmentomes Mathios, Dimitrios; Johansen, Jakob Sidenius; Cristiano, Stephen; Medina, Jamie E.; Phallen, Jillian; Larsen, Klaus R.; Bruhm, Daniel C.; Niknafs, Noushin; Ferreira, Leonardo; Adleff, Vilmos; Chiao, Jia Yuee; Leal, Alessandro; Noe, Michael; White, James R.; Arun, Adith S.; Hruban, Carolyn; Annapragada, Akshaya, V; Jensen, Sarah Ostrup; Orntoft, Mai-Britt Worm; Madsen, Anders Husted; Carvalho, Beatriz; de Wit, Meike; Carey, Jacob; Dracopoli, Nicholas C.; Maddala, Tara; Fang, Kenneth C.; Hartman, Anne-Renee; Forde, Patrick M.; Anagnostou, Valsamo; Brahmer, Julie R.; Fijneman, Remond J. A.; Nielsen, Hans Jorgen; Meijer, Gerrit A.; Andersen, Claus Lindbjerg; Mellemgaard, Anders; Bojesen, Stig E.; Scharpf, Robert B.; Velculescu, Victor E. Share Save
Genomic characterization of malignant progression in neoplastic pancreatic cysts Noe, Michael; Niknafs, Noushin; Fischer, Catherine G.; Hackeng, Wenzel M.; Guthrie, Violeta Beleva; Hosoda, Waki; Debeljak, Marija; Papp, Eniko; Adleff, Vilmos; White, James R.; Luchini, Claudio; Pea, Antonio; Scarpa, Aldo; Butturini, Giovanni; Zamboni, Giuseppe; Castelli, Paola; Hong, Seung-Mo; Yachida, Shinichi; Hiraoka, Nobuyoshi; Gill, Anthony J.; Samra, Jaswinder S.; Offerhaus, G. Johan A.; Hoorens, Anne; Verheij, Joanne; Jansen, Casper; Adsay, N. Volkan; Jiang, Wei; Winter, Jordan; Albores-Saavedra, Jorge; Terris, Benoit; Thompson, Elizabeth D.; Roberts, Nicholas J.; Hruban, Ralph H.; Karchin, Rachel; Scharpf, Robert B.; Brosens, Lodewijk A. A.; Velculescu, Victor E.; Wood, Laura D. Share Save
White blood cell and cell-free DNA analyses for detection of residual disease in gastric cancer Leal, Alessandro; van Grieken, Nicole C. T.; Palsgrove, Doreen N.; Phallen, Jillian; Medina, Jamie E.; Hruban, Carolyn; Broeckaert, Mark A. M.; Anagnostou, Valsamo; Adleff, Vilmos; Bruhm, Daniel C.; Canzoniero, Jenna, V; Fiksel, Jacob; Nordsmark, Marianne; Warmerdam, Fabienne A. R. M.; Verheul, Henk M. W.; van Spronsen, Dick Johan; Beerepoot, Laurens, V; Geenen, Maud M.; Portielje, Johanneke E. A.; Jansen, Edwin P. M.; van Sandick, Johanna; Kranenbarg, Elma Meershoek-Klein; van Laarhoven, Hanneke W. M.; van der Peet, Donald L.; van de Velde, Cornelis J. H.; Verheij, Marcel; Fijneman, Remond; Scharpf, Robert B.; Meijer, Gerrit A.; Cats, Annemieke; Velculescu, Victor E. Share Save
Multimodal genomic features predict outcome of immune checkpoint blockade in non-small-cell lung cancer Anagnostou, Valsamo; Niknafs, Noushin; Marrone, Kristen; Bruhm, Daniel C.; White, James R.; Naidoo, Jarushka; Hummelink, Karlijn; Monkhorst, Kim; Lalezari, Ferry; Lanis, Mara; Rosner, Samuel; Reuss, Joshua E.; Smith, Kellie N.; Adleff, Vilmos; Rodgers, Kristen; Belcaid, Zineb; Rhymee, Lamia; Levy, Benjamin; Feliciano, Josephine; Hann, Christine L.; Ettinger, David S.; Georgiades, Christos; Verde, Franco; Illei, Peter; Li, Qing Kay; Baras, Alexander S.; Gabrielson, Edward; Brock, Malcolm V.; Karchin, Rachel; Pardoll, Drew M.; Baylin, Stephen B.; Brahmer, Julie R.; Scharpf, Robert B.; Forde, Patrick M.; Velculescu, Victor E. Share Save
Early Noninvasive Detection of Response to Targeted Therapy in Non-Small Cell Lung Cancer Phallen, Jillian; Leal, Alessandro; Woodward, Brian D.; Forde, Patrick M.; Naidoo, Jarushka; Marrone, Kristen A.; Brahmer, Julie R.; Fiksel, Jacob; Medina, Jamie E.; Cristiano, Stephen; Palsgrove, Doreen N.; Gocke, Christopher D.; Bruhm, Daniel C.; Keshavarzian, Parissa; Adleff, Vilmos; Weihe, Elizabeth; Anagnostou, Valsamo; Scharpf, Robert B.; Velculescu, Victor E.; Husain, Hatim Share Save
Dynamics of Tumor and Immune Responses during Immune Checkpoint Blockade in Non-Small Cell Lung Cancer Anagnostou, Valsamo; Forde, Patrick M.; White, James R.; Niknafs, Noushin; Hruban, Carolyn; Naidoo, Jarushka; Marrone, Kristen; Sivakumar, I. K. Ashok; Bruhm, Daniel C.; Rosner, Samuel; Phallen, Jillian; Leal, Alessandro; Adleff, Vilmos; Smith, Kellie N.; Cottrell, Tricia R.; Rhymee, Lamia; Palsgrove, Doreen N.; Hann, Christine L.; Levy, Benjamin; Feliciano, Josephine; Georgiades, Christos; Verde, Franco; Illei, Peter; Li, Qing Kay; Gabrielson, Edward; Brock, Malcolm V.; Isbell, James M.; Sauter, Jennifer L.; Taube, Janis; Scharpf, Robert B.; Karchin, Rachel; Pardoll, Drew M.; Chaft, Jamie E.; Hellmann, Matthew D.; Brahmer, Julie R.; Velculescu, Victor E. Share Save
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