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Bruce R. Donald

Duke University

55H-index
264Paper Count
9.2KCitation Count
Published Papers 36
Publication Date
Predicting Pose Distribution of Protein Domains Connected by Flexible Linkers Is an Unsolved Problem
err2025-10-16
err0
PREAI
errAllen C. McBride; Feng Yu; Edward H. Cheng; Aulane Mpouli; Aimee C. Soe; Michal Hammel; Gaetano T. Montelione; Terrence G. Oas; Susan E. Tsutakawa; Bruce R. Donald
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Disruptor: Computational identification of oncogenic mutants disrupting protein-protein and protein-DNA interactions
err2023-07-13
err4
errOAAI
errKugler, Valentina; Lieb, Andreas; Guerin, Nathan; Donald, Bruce R.; Stefan, Eduard; Kaserer, Teresa
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Improved HIV-1 neutralization breadth and potency of V2-apex antibodies by in silico design
err2023-07-01
err5
errOAAI
errHolt, Graham T.; Gorman, Jason; Wang, Siyu; Lowegard, Anna U.; Zhang, Baoshan; Liu, Tracy; Lin, Bob C.; Louder, Mark K.; Frenkel, Marcel S.; McKee, Krisha; O'Dell, Sijy; Rawi, Reda; Shen, Chen-Hsiang; Doria-Rose, Nicole A.; Kwong, Peter D.; Donald, Bruce R.
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Resistor: An algorithm for predicting resistance mutations via Pareto optimization over multistate protein design and mutational signatures
err2022-10-01
err5
errOAAI
errGuerin, Nathan; Feichtner, Andreas; Stefan, Eduard; Kaserer, Teresa; Donald, Bruce R.
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Toward Broad Spectrum Dihydrofolate Reductase Inhibitors Targeting Trimethoprim Resistant Enzymes Identified in Clinical Isolates of Methicillin Resistant Staphylococcus aureus
err2019-09-30
err25
errOAAI
errReeve, Stephanie M.; Si, Debjani; Krucinska, Jolanta; Yan, Yongzhao; Viswanathan, Kishore; Wang, Siyu; Holt, Graham T.; Frenkel, Marcel S.; Ojewole, Adegoke A.; Estrada, Alexavier; Agabiti, Sherry S.; Alverson, Jeremy B.; Gibson, Nathan D.; Priestley, Nigel D.; Wiemer, Andrew J.; Donald, Bruce R.; Wright, Dennis L.
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Protein Design by Provable Algorithms
err2019-09-24
err12
errOAAI
errHallen, Mark A.; Donald, Bruce R.
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OSPREY 3.0: Open-source protein redesign for you, with powerful new features
err2018-10-14
err54
errOAAI
errHallen, Mark A.; Martin, Jeffrey W.; Ojewole, Adegoke; Jou, Jonathan D.; Lowegard, Anna U.; Frenkel, Marcel S.; Gainza, Pablo; Nisonoff, Hunter M.; Mukund, Aditya; Wang, Siyu; Holt, Graham T.; Zhou, David; Dowd, Elizabeth; Donald, Bruce R.
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Algorithms for protein design
err2016-08-01
err68
errOAAI
errGainza, Pablo; Nisonoff, Hunter M.; Donald, Bruce R.
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Fast search algorithms for computational protein design
err2016-02-02
err27
errOAAI
errTraore, Seydou; Roberts, Kyle E.; Allouche, David; Donald, Bruce R.; Andre, Isabelle; Schiex, Thomas; Barbe, Sophie
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Fast gap-free enumeration of conformations and sequences for protein design
err2015-08-24
err19
errOAAI
errRoberts, Kyle E.; Gainza, Pablo; Hallen, Mark A.; Donald, Bruce R.
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Crystal structure, conformational fixation and entry-related interactions of mature ligand-free HIV-1 Env
err2015-06-22
err345
errOAAI
errDo Kwon, Young; Pancera, Marie; Acharya, Priyamvada; Georgiev, Ivelin S.; Crooks, Emma T.; Gorman, Jason; Joyce, M. Gordon; Guttman, Miklos; Ma, Xiaochu; Narpala, Sandeep; Soto, Cinque; Terry, Daniel S.; Yang, Yongping; Zhou, Tongqing; Ahlsen, Goran; Bailer, Robert T.; Chambers, Michael; Chuang, Gwo-Yu; Doria-Rose, Nicole A.; Druz, Aliaksandr; Hallen, Mark A.; Harned, Adam; Kirys, Tatsiana; Louder, Mark K.; O'Dell, Sijy; Ofek, Gilad; Osawa, Keiko; Prabhakaran, Madhu; Sastry, Mallika; Stewart-Jones, Guillaume B. E.; Stuckey, Jonathan; Thomas, Paul V.; Tittley, Tishina; Williams, Constance; Zhang, Baoshan; Zhao, Hong; Zhou, Zhou; Donald, Bruce R.; Lee, Lawrence K.; Zolla-Pazner, Susan; Baxa, Ulrich; Schoen, Arne; Freire, Ernesto; Shapiro, Lawrence; Lee, Kelly K.; Arthos, James; Munro, James B.; Blanchard, Scott C.; Mothes, Walther; Binley, James M.; McDermott, Adrian B.; Mascola, John R.; Kwong, Peter D.
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Visualizing the Inter-Domain Motions of a Pathogenic Protein using Sparse RDC Data
err2015-01-01
err0
errOAAI
errQi, Yang; Martin, Jeffrey W.; Yan, Anthony; Thelot, Francois; Donald, Bruce R.; Oas, Terrence G.
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Protein design algorithms predict viable resistance to an experimental antifolate
err2014-12-31
err52
errOAAI
errReeve, Stephanie M.; Gainza, Pablo; Frey, Kathleen M.; Georgiev, Ivelin; Donald, Bruce R.; Anderson, Amy C.
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Enhanced Potency of a Broadly Neutralizing HIV-1 Antibody In Vitro Improves Protection against Lentiviral Infection In Vivo
err2014-11-01
err281
errOAAI
errRudicell, Rebecca S.; Do Kwon, Young; Ko, Sung-Youl; Pegu, Amarendra; Louder, Mark K.; Georgiev, Ivelin S.; Wu, Xueling; Zhu, Jiang; Boyington, Jeffrey C.; Chen, Xuejun; Shi, Wei; Yang, Zhi-Yong; Doria-Rose, Nicole A.; McKee, Krisha; O'Dell, Sijy; Schmidt, Stephen D.; Chuang, Gwo-Yu; Druz, Aliaksandr; Soto, Cinque; Yang, Yongping; Zhang, Baoshan; Zhou, Tongqing; Todd, John-Paul; Lloyd, Krissey E.; Eudailey, Joshua; Roberts, Kyle E.; Donald, Bruce R.; Bailer, Robert T.; Ledgerwood, Julie; Mullikin, James C.; Shapiro, Lawrence; Koup, Richard A.; Graham, Barney S.; Nason, Martha C.; Connors, Mark; Haynes, Barton F.; Rao, Srinivas S.; Roederer, Mario; Kwong, Peter D.; Mascola, John R.; Nabel, Gary J.
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