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Playbook workflow builder: Interactive construction of bioinformatics workflows Clarke, Daniel J. B.; Evangelista, John Erol; Xie, Zhuorui; Marino, Giacomo B.; Byrd, Anna I.; Maurya, Mano R.; Srinivasan, Sumana; Yu, Keyang; Petrosyan, Varduhi; Roth, Matthew E.; Milinkov, Miroslav; King, Charles Hadley; Vora, Jeet Kiran; Keeney, Jonathon; Nemarich, Christopher; Khan, William; Lachmann, Alexander; Ahmed, Nasheath; Agris, Alexandra; Pan, Juncheng; Ramachandran, Srinivasan; Fahy, Eoin; Esquivel, Emmanuel; Mihajlovic, Aleksandar; Jevtic, Bosko; Milinovic, Vuk; Kim, Sean; McNeely, Patrick; Wang, Tianyi; Wenger, Eric; Brown, Miguel A.; Sickler, Alexander; Zhu, Yuankun; Jenkins, Sherry L.; Blood, Philip D.; Taylor, Deanne M.; Resnick, Adam C.; Mazumder, Raja; Milosavljevic, Aleksandar; Subramaniam, Shankar; Ma'ayan, Avi Share Save
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LANTERN study: A multi-omics digital human avatar for integrating precision medicine into clinical practice for lung cancer patients Bria, E.; Lococo, F.; Boldrini, L.; Evangelista, J.; Flamini, S.; Minucci, A.; Troost, E. G. C.; Roza, A.; Farre, N.; Ozturk, E.; Urbani, A.; Trisolini, R.; Giordano, A.; Rindi, G.; Sala, E.; Valentini, V.; Boccia, S.; Margaritora, S.; Scambia, G.; Tortora, G. Share Save
Toxicology knowledge graph for structural birth defects Evangelista, John Erol; Clarke, Daniel J. B.; Xie, Zhuorui; Marino, Giacomo B.; Utti, Vivian; Jenkins, Sherry L.; Ahooyi, Taha Mohseni; Bologa, Cristian G.; Yang, Jeremy J.; Binder, Jessica L.; Kumar, Praveen; Lambert, Christophe G.; Grethe, Jeffrey S.; Wenger, Eric; Taylor, Deanne; Oprea, Tudor, I; de Bono, Bernard; Ma'ayan, Avi Share Save
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A multi-omic analysis of MCF10A cells provides a resource for integrative assessment of ligand-mediated molecular and phenotypic responses Gross, Sean M.; Dane, Mark A.; Smith, Rebecca L.; Devlin, Kaylyn L.; McLean, Ian C.; Derrick, Daniel S.; Mills, Caitlin E.; Subramanian, Kartik; London, Alexandra B.; Torre, Denis; Evangelista, John Erol; Clarke, Daniel J. B.; Xie, Zhuorui; Erdem, Cemal; Lyons, Nicholas; Natoli, Ted; Pessa, Sarah; Lu, Xiaodong; Mullahoo, James; Li, Jonathan; Adam, Miriam; Wassie, Brook; Liu, Moqing; Kilburn, David F.; Liby, Tiera A.; Bucher, Elmar; Sanchez-Aguila, Crystal; Daily, Kenneth; Omberg, Larsson; Wang, Yunguan; Jacobson, Connor; Yapp, Clarence; Chung, Mirra; Vidovic, Dusica; Lu, Yiling; Schurer, Stephan; Lee, Albert; Pillai, Ajay; Subramanian, Aravind; Papanastasiou, Malvina; Fraenkel, Ernest; Feiler, Heidi S.; Mills, Gordon B.; Jaffe, Jake D.; Ma'ayan, Avi; Birtwistle, Marc R.; Sorger, Peter K.; Korkola, James E.; Gray, Joe W.; Heiser, Laura M. Share Save
SigCom LINCS: data and metadata search engine for a million gene expression signatures Evangelista, John Erol; Clarke, Daniel J. B.; Xie, Zhuorui; Lachmann, Alexander; Jeon, Minji; Chen, Kerwin; Jagodnik, Kathleen M.; Jenkins, Sherry L.; Kuleshov, Maxim, V; Wojciechowicz, Megan L.; Schurer, Stephan C.; Medvedovic, Mario; Ma'ayan, Avi Share Save
KEA3: improved kinase enrichment analysis via data integration Kuleshov, Maxim, V; Xie, Zhuorui; London, Alexandra B. K.; Yang, Janice; Evangelista, John Erol; Lachmann, Alexander; Shu, Ingrid; Torre, Denis; Ma'ayan, Avi Share Save
Drugmonizome and Drugmonizome-ML: integration and abstraction of small molecule attributes for drug enrichment analysis and machine learning Kropiwnicki, Eryk; Evangelista, John E.; Stein, Daniel J.; Clarke, Daniel J. B.; Lachmann, Alexander; Kuleshov, Maxim, V; Jeon, Minji; Jagodnik, Kathleen M.; Ma'ayan, Avi Share Save
Predicting Lyme Disease From Patients' Peripheral Blood Mononuclear Cells Profiled With RNA-Sequencing Clarke, Daniel J. B.; Rebman, Alison W.; Bailey, Allison; Wojciechowicz, Megan L.; Jenkins, Sherry L.; Evangelista, John E.; Danieletto, Matteo; Fan, Jinshui; Eshoo, Mark W.; Mosel, Michael R.; Robinson, William; Ramadoss, Nitya; Bobe, Jason; Soloski, Mark J.; Aucott, John N.; Ma'ayan, Avi Share Save
Appyters: Turning Jupyter Notebooks into data-driven web apps Clarke, Daniel J. B.; Jeon, Minji; Stein, Daniel J.; Moiseyev, Nicole; Kropiwnicki, Eryk; Dai, Charles; Xie, Zhuorui; Wojciechowicz, Megan L.; Litz, Skylar; Hom, Jason; Evangelista, John Erol; Goldman, Lucas; Zhang, Serena; Yoon, Christine; Ahamed, Tahmid; Bhuiyan, Samantha; Cheng, Minxuan; Karam, Julie; Jagodnik, Kathleen M.; Shu, Ingrid; Lachmann, Alexander; Ayling, Sam; Jenkins, Sherry L.; Ma'ayan, Avi Share Save
The COVID-19 Drug and Gene Set Library Kuleshov, Maxim, V; Stein, Daniel J.; Clarke, Daniel J. B.; Kropiwnicki, Eryk; Jagodnik, Kathleen M.; Bartal, Alon; Evangelista, John E.; Hom, Jason; Cheng, Minxuan; Bailey, Allison; Zhou, Abigail; Ferguson, Laura B.; Lachmann, Alexander; Ma'ayan, Avi Share Save
LINCS Data Portal 2.0: next generation access point for perturbation-response signatures Stathias, Vasileios; Turner, John; Koleti, Amar; Vidovic, Dusica; Cooper, Daniel; Fazel-Najafabadi, Mehdi; Pilarczyk, Marcin; Terryn, Raymond; Chung, Caty; Umeano, Afoma; Clarke, Daniel J. B.; Lachmann, Alexander; Evangelista, John Erol; Ma'ayan, Avi; Medvedovic, Mario; Schurer, Stephan C. Share Save
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