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Depression in Individuals Coinfected with HIV and HCV Is Associated with Systematic Differences in the Gut Microbiome and Metabolome (vol 5, e0046520, 2020) Taylor, Bryn C.; Weldon, Kelly C.; Ellis, Ronald J.; Franklin, Donald; Groth, Tobin; Gentry, Emily C.; Tripathi, Anupriya; Mcdonald, Daniel; Humphrey, Gregory; Bryant, Mackenzie; Toronczak, Julia; Schwartz, Tara; Oliveira, Michelli F.; Heaton, Robert; Grant, Igor; Gianella, Sara; Letendre, Scott; Swafford, Austin; Dorrestein, Pieter C.; Knight, Rob Share Save
Multiplatform metabolomic interlaboratory study of a whole human stool candidate reference material from omnivore and vegan donors Cruz, Abraham Kuri; Alves, Marina Amaral; Andresson, Thorkell; Bayless, Amanda L.; Bloodsworth, Kent J.; Bowden, John A.; Bullock, Kevin; Burnet, Meagan C.; Carnevale Neto, Fausto; Choy, Angelina; Clish, Clary B.; Couvillion, Sneha P.; Cumeras, Raquel; Dailey, Lucas; Dallmann, Guido; Davis, W. Clay; Deik, Amy A.; Dickens, Alex M.; Djukovic, Danijel; Dorrestein, Pieter C.; Eder, Josie G.; Fiehn, Oliver; Flores, Roberto; Gika, Helen; Hagiwara, Kehau A.; Pham, Tuan Hai; Harynuk, James J.; Aristizabal-Henao, Juan J.; Hoyt, David W.; Jean-Francois, Focant; Krakstrom, Matilda; Kumar, Amit; Kyle, Jennifer E.; Lamichhane, Santosh; Li, Yuan; Nam, Seo Lin; Mandal, Rupasri; de la Mata, A. Paulina; Meehan, Michael J.; Meikopoulos, Thomas; Metz, Thomas O.; Mouskeftara, Thomai; Munoz, Nathalie; Gowda, G. A. Nagana; Oresic, Matej; Panitchpakdi, Morgan; Pierre-Hugues, Stefanuto; Raftery, Daniel; Rushing, Blake; Schock, Tracey; Seifried, Harold; Servetas, Stephanie; Shen, Tong; Sumner, Susan; Carrillo, Kieran S. Tarazona; Thibaut, Dejong; Trejo, Jesse B.; Van Meulebroek, Lieven; Vanhaecke, Lynn; Virgiliou, Christina; Weldon, Kelly C.; Wishart, David S.; Zhang, Lu; Zheng, Jiamin; Da Silva, Sandra Share Save
Peripheral neuronal activation shapes the microbiome and alters gut physiology Griffiths, Jessica A.; Yoo, Bryan B.; Thuy-Boun, Peter; Cantu, Victor J.; Weldon, Kelly C.; Challis, Collin; Sweredoski, Michael J.; Chan, Ken Y.; Thron, Taren M.; Sharon, Gil; Moradian, Annie; Humphrey, Gregory; Zhu, Qiyun; Shaffer, Justin P.; Wolan, Dennis W.; Dorrestein, Pieter C.; Knight, Rob; Gradinaru, Viviana; Mazmanian, Sarkis K. Share Save
Open access repository-scale propagated nearest neighbor suspect spectral library for untargeted metabolomics Bittremieux, Wout; Avalon, Nicole E.; Thomas, Sydney P.; Kakhkhorov, Sarvar A.; Aksenov, Alexander A.; Gomes, Paulo Wender P.; Aceves, Christine M.; Caraballo-Rodriguez, Andres Mauricio; Gauglitz, Julia M.; Gerwick, William H.; Huan, Tao; Jarmusch, Alan K.; Kaddurah-Daouk, Rima F.; Kang, Kyo Bin; Kim, Hyun Woo; Kondic, Todor; Mannochio-Russo, Helena; Meehan, Michael J.; Melnik, Alexey V.; Nothias, Louis-Felix; O'Donovan, Claire; Panitchpakdi, Morgan; Petras, Daniel; Schmid, Robin; Schymanski, Emma L.; van der Hooft, Justin J. J.; Weldon, Kelly C.; Yang, Heejung; Xing, Shipei; Zemlin, Jasmine; Wang, Mingxun; Dorrestein, Pieter C. Share Save
Enhancing untargeted metabolomics using metadata-based source annotation Gauglitz, Julia M.; West, Kiana A.; Bittremieux, Wout; Williams, Candace L.; Weldon, Kelly C.; Panitchpakdi, Morgan; Di Ottavio, Francesca; Aceves, Christine M.; Brown, Elizabeth; Sikora, Nicole C.; Jarmusch, Alan K.; Martino, Cameron; Tripathi, Anupriya; Meehan, Michael J.; Dorrestein, Kathleen; Shaffer, Justin P.; Coras, Roxana; Vargas, Fernando; Goldasich, Lindsay DeRight; Schwartz, Tara; Bryant, MacKenzie; Humphrey, Gregory; Johnson, Abigail J.; Spengler, Katharina; Belda-Ferre, Pedro; Diaz, Edgar; McDonald, Daniel; Zhu, Qiyun; Elijah, Emmanuel O.; Wang, Mingxun; Marotz, Clarisse; Sprecher, Kate E.; Vargas-Robles, Daniela; Withrow, Dana; Ackermann, Gail; Herrera, Lourdes; Bradford, Barry J.; Marques, Lucas Maciel Mauriz; Amaral, Juliano Geraldo; Silva, Rodrigo Moreira; Veras, Flavio Protasio; Cunha, Thiago Mattar; Oliveira, Rene Donizeti Ribeiro; Louzada-Junior, Paulo; Mills, Robert H.; Piotrowski, Paulina K.; Servetas, Stephanie L.; Da Silva, Sandra M.; Jones, Christina M.; Lin, Nancy J.; Lippa, Katrice A.; Jackson, Scott A.; Daouk, Rima Kaddurah; Galasko, Douglas; Dulai, Parambir S.; Kalashnikova, Tatyana I.; Wittenberg, Curt; Terkeltaub, Robert; Doty, Megan M.; Kim, Jae H.; Rhee, Kyung E.; Beauchamp-Walters, Julia; Wright, Jr Kenneth P.; Dominguez-Bello, Maria Gloria; Manary, Mark; Oliveira, Michelli F.; Boland, Brigid S.; Lopes, Norberto Peporine; Guma, Monica; Swafford, Austin D.; Dutton, Rachel J.; Knight, Rob; Dorrestein, Pieter C. Share Save
Signatures of HIV and Major Depressive Disorder in the Plasma Microbiome Taylor, Bryn C.; Sheikh Andalibi, Mohammadsobhan; Wandro, Stephen; Weldon, Kelly C.; Sepich-Poore, Gregory D.; Carpenter, Carolina S.; Fraraccio, Serena; Franklin, Donald; Iudicello, Jennifer E.; Letendre, Scott; Gianella, Sara; Grant, Igor; Ellis, Ronald J.; Heaton, Robert K.; Knight, Rob; Swafford, Austin D. Share Save
Effects of a ketogenic and low-fat diet on the human metabolome, microbiome, and foodome in adults at risk for Alzheimer's disease Dilmore, Amanda Hazel; Martino, Cameron; Neth, Bryan J.; West, Kiana A.; Zemlin, Jasmine; Rahman, Gibraan; Panitchpakdi, Morgan; Meehan, Michael J.; Weldon, Kelly C.; Blach, Colette; Schimmel, Leyla; Kaddurah-Daouk, Rima; Dorrestein, Pieter C.; Knight, Rob; Craft, Suzanne Share Save
Plasma metabolites with mechanistic and clinical links to the neurovascular disease cavernous angioma Srinath, Abhinav; Xie, Bingqing; Li, Ying; Sone, Je Yeong; Romanos, Sharbel; Chen, Chang; Sharma, Anukriti; Polster, Sean; Dorrestein, Pieter C.; Weldon, Kelly C.; DeBiasse, Dorothy; Moore, Thomas; Lightle, Rhonda; Koskimaki, Janne; Zhang, Dongdong; Stadnik, Agnieszka; Piedad, Kristina; Hagan, Matthew; Shkoukani, Abdallah; Carrion-Penagos, Julian; Bi, Dehua; Shen, Le; Shenkar, Robert; Ji, Yuan; Sidebottom, Ashley; Pamer, Eric; Gilbert, Jack A.; Kahn, Mark L.; D'Souza, Mark; Sulakhe, Dinanath; Awad, Issam A.; Girard, Romuald Share Save
Enhancing untargeted metabolomics using metadata-based source annotation Gauglitz, Julia M.; West, Kiana A.; Bittremieux, Wout; Williams, Candace L.; Weldon, Kelly C.; Panitchpakdi, Morgan; Di Ottavio, Francesca; Aceves, Christine M.; Brown, Elizabeth; Sikora, Nicole C.; Jarmusch, Alan K.; Martino, Cameron; Tripathi, Anupriya; Meehan, Michael J.; Dorrestein, Kathleen; Shaffer, Justin P.; Coras, Roxana; Vargas, Fernando; Goldasich, Lindsay DeRight; Schwartz, Tara; Bryant, MacKenzie; Humphrey, Gregory; Johnson, Abigail J.; Spengler, Katharina; Belda-Ferre, Pedro; Diaz, Edgar; McDonald, Daniel; Zhu, Qiyun; Elijah, Emmanuel O.; Wang, Mingxun; Marotz, Clarisse; Sprecher, Kate E.; Vargas-Robles, Daniela; Withrow, Dana; Ackermann, Gail; Herrera, Lourdes; Bradford, Barry J.; Marques, Lucas Maciel Mauriz; Amaral, Juliano Geraldo; Silva, Rodrigo Moreira; Veras, Flavio Protasio; Cunha, Thiago Mattar; Oliveira, Rene Donizeti Ribeiro; Louzada-Junior, Paulo; Mills, Robert H.; Piotrowski, Paulina K.; Servetas, Stephanie L.; Da Silva, Sandra M.; Jones, Christina M.; Lin, Nancy J.; Lippa, Katrice A.; Jackson, Scott A.; Daouk, Rima Kaddurah; Galasko, Douglas; Dulai, Parambir S.; Kalashnikova, Tatyana I.; Wittenberg, Curt; Terkeltaub, Robert; Doty, Megan M.; Kim, Jae H.; Rhee, Kyung E.; Beauchamp-Walters, Julia; Wright, Kenneth P., Jr.; Dominguez-Bello, Maria Gloria; Manary, Mark; Oliveira, Michelli F.; Boland, Brigid S.; Lopes, Norberto Peporine; Guma, Monica; Swafford, Austin D.; Dutton, Rachel J.; Knight, Rob; Dorrestein, Pieter C. Share Save
Multiomic Analyses of Nascent Preterm Infant Microbiomes Differentiation Suggest Opportunities for Targeted Intervention Orchanian, Stephanie B.; Gauglitz, Julia M.; Wandro, Stephen; Weldon, Kelly C.; Doty, Megan; Stillwell, Kristina; Hansen, Shalisa; Jiang, Lingjing; Vargas, Fernando; Rhee, Kyung E.; Lumeng, Julie C.; Dorrestein, Pieter C.; Knight, Rob; Kim, Jae H.; Song, Se Jin; Swafford, Austin D. Share Save
The impact of maternal asthma on the preterm infants' gut metabolome and microbiome (MAP study) Bai-Tong, Shiyu S.; Thoemmes, Megan S.; Weldon, Kelly C.; Motazavi, Diba; Kitsen, Jessica; Hansen, Shalisa; Furst, Annalee; Geng, Bob; Song, Se Jin; Gilbert, Jack A.; Bode, Lars; Dorrestein, Pieter C.; Knight, Rob; Leibel, Sydney A.; Leibel, Sandra L. Share Save
Salivary bacterial signatures in depression-obesity comorbidity are associated with neurotransmitters and neuroactive dipeptides Aleti, Gajender; Kohn, Jordan N.; Troyer, Emily A.; Weldon, Kelly; Huang, Shi; Tripathi, Anupriya; Dorrestein, Pieter C.; Swafford, Austin D.; Knight, Rob; Hong, Suzi Share Save
Multi-omic Biomarker Development In A Mendelian Neurovascular Disease, Cavernous Angioma Srinath, Abhinav; Romanos, Sharbel; Li Ying; Xie Bingqing; Chen Chang; Moore, Thomas; Lightle, Rhonda; DeBiasse, Dorothy; Sone, Je Yeong Y.; Shen Le; McCurdy, Sara G.; Lai, Catherine; Stadnik, Agnieszka; Piedad, Kristina; Dorrestein, Pieter; Weldon, Kelly; Snellings, Daniel; Shenkar, Robert; Gilbert, Jack; D'Souza, Mark; Sulakhe, Dinanath; Ji Yuan; Lopez-ramirez, Miguel A.; Kahn, Mark L.; Marchuk, Douglas A.; Ginsberg, Mark H.; Girard, Romuald; Awad, Issam A. Share Save
The Host-Microbiome Response to Hyperbaric Oxygen Therapy in Ulcerative Colitis Patients Gonzalez, Carlos G.; Mills, Robert H.; Kordahi, Melissa C.; Carrillo-Terrazas, Marvic; Secaira-Morocho, Henry; Widjaja, Christella E.; Tsai, Matthew S.; Mittal, Yash; Yee, Brian A.; Vargas, Fernando; Weldon, Kelly; Gauglitz, Julia M.; Delaroque, Clara; Sauceda, Consuelo; Rossitto, Leigh-Ana; Ackermann, Gail; Humphrey, Gregory; Swafford, Austin D.; Siegel, Corey A.; Buckey, Jay C., Jr.; Raffals, Laura E.; Sadler, Charlotte; Lindholm, Peter; Fisch, Kathleen M.; Valaseck, Mark; Suriawinata, Arief; Yeo, Gene W.; Ghosh, Pradipta; Chang, John T.; Chu, Hiutung; Dorrestein, Pieter; Zhu, Qiyun; Chassaing, Benoit; Knight, Rob; Gonzalez, David J.; Dulai, Parambir S. Share Save
Ion identity molecular networking for mass spectrometry-based metabolomics in the GNPS environment Schmid, Robin; Petras, Daniel; Nothias, Louis-Felix; Wang, Mingxun; Aron, Allegra T.; Jagels, Annika; Tsugawa, Hiroshi; Rainer, Johannes; Garcia-Aloy, Mar; Duhrkop, Kai; Korf, Ansgar; Pluskal, Tomas; Kamenik, Zdenek; Jarmusch, Alan K.; Caraballo-Rodriguez, Andres Mauricio; Weldon, Kelly C.; Nothias-Esposito, Melissa; Aksenov, Alexander A.; Bauermeister, Anelize; Orio, Andrea Albarracin; Grundmann, Carlismari O.; Vargas, Fernando; Koester, Irina; Gauglitz, Julia M.; Gentry, Emily C.; Hovelmann, Yannick; Kalinina, Svetlana A.; Pendergraft, Matthew A.; Panitchpakdi, Morgan; Tehan, Richard; Le Gouellec, Audrey; Aleti, Gajender; Russo, Helena Mannochio; Arndt, Birgit; Hubner, Florian; Hayen, Heiko; Zhi, Hui; Raffatellu, Manuela; Prather, Kimberly A.; Aluwihare, Lihini, I; Bocker, Sebastian; McPhail, Kerry L.; Humpf, Hans-Ulrich; Karst, Uwe; Dorrestein, Pieter C. Share Save
A community resource for paired genomic and metabolomic data mining Schorn, Michelle A.; Verhoeven, Stefan; Ridder, Lars; Huber, Florian; Acharya, Deepa D.; Aksenov, Alexander A.; Aleti, Gajender; Moghaddam, Jamshid Amiri; Aron, Allegra T.; Aziz, Saefuddin; Bauermeister, Anelize; Bauman, Katherine D.; Baunach, Martin; Beemelmanns, Christine; Beman, J. Michael; Berlanga-Clavero, Maria Victoria; Blacutt, Alex A.; Bode, Helge B.; Boullie, Anne; Brejnrod, Asker; Bugni, Tim S.; Calteau, Alexandra; Cao, Liu; Carrion, Victor J.; Castelo-Branco, Raquel; Chanana, Shaurya; Chase, Alexander B.; Chevrette, Marc G.; Costa-Lotufo, Leticia V.; Crawford, Jason M.; Currie, Cameron R.; Cuypers, Bart; Dang, Tam; de Rond, Tristan; Demko, Alyssa M.; Dittmann, Elke; Du, Chao; Drozd, Christopher; Dujardin, Jean-Claude; Dutton, Rachel J.; Edlund, Anna; Fewer, David P.; Garg, Neha; Gauglitz, Julia M.; Gentry, Emily C.; Gerwick, Lena; Glukhov, Evgenia; Gross, Harald; Gugger, Muriel; Guillen Matus, Dulce G.; Helfrich, Eric J. N.; Hempel, Benjamin-Florian; Hur, Jae-Seoun; Iorio, Marianna; Jensen, Paul R.; Kang, Kyo Bin; Kaysser, Leonard; Kelleher, Neil L.; Kim, Chung Sub; Kim, Ki Hyun; Koester, Irina; Koenig, Gabriele M.; Leao, Tiago; Lee, Seoung Rak; Lee, Yi-Yuan; Li, Xuanji; Little, Jessica C.; Maloney, Katherine N.; Maennle, Daniel; Martin H., Christian; McAvoy, Andrew C.; Metcalf, Willam W.; Mohimani, Hosein; Molina-Santiago, Carlos; Moore, Bradley S.; Mullowney, Michael W.; Muskat, Mitchell; Nothias, Louis-Felix; O'Neill, Ellis C.; Parkinson, Elizabeth I.; Petras, Daniel; Piel, Jorn; Pierce, Emily C.; Pires, Karine; Reher, Raphael; Romero, Diego; Roper, M. Caroline; Rust, Michael; Saad, Hamada; Saenz, Carmen; Sanchez, Laura M.; Sorensen, Soren Johannes; Sosio, Margherita; Sussmuth, Roderich D.; Sweeney, Douglas; Tahlan, Kapil; Thomson, Regan J.; Tobias, Nicholas J.; Trindade-Silva, Amaro E.; van Wezel, Gilles P.; Wang, Mingxun; Weldon, Kelly C.; Zhang, Fan; Ziemert, Nadine; Duncan, Katherine R.; Cruesemann, Max; Rogers, Simon; Dorrestein, Pieter C.; Medema, Marnix H.; van der Hooft, Justin J. J. Share Save
Effects of Immunization With the Soil-Derived Bacterium Mycobacterium vaccae on Stress Coping Behaviors and Cognitive Performance in a Two Hit Stressor Model Foxx, Christine L.; Heinze, Jared D.; Gonzalez, Antonio; Vargas, Fernando; Baratta, Michael V.; Elsayed, Ahmed I.; Stewart, Jessica R.; Loupy, Kelsey M.; Arnold, Mathew R.; Flux, M. C.; Sago, Saydie A.; Siebler, Philip H.; Milton, Lauren N.; Lieb, Margaret W.; Hassell, James E.; Smith, David G.; Lee, Kyo A. K.; Appiah, Sandra A.; Schaefer, Evan J.; Panitchpakdi, Morgan; Sikora, Nicole C.; Weldon, Kelly C.; Stamper, Christopher E.; Schmidt, Dominic; Duggan, David A.; Mengesha, Yosan M.; Ogbaselassie, Mikale; Nguyen, Kadi T.; Gates, Chloe A.; Schnabel, K'loni; Tran, Linh; Jones, Joslynn D.; Vitaterna, Martha H.; Turek, Fred W.; Fleshner, Monika; Dorrestein, Pieter C.; Knight, Rob; Wright, Kenneth P.; Lowry, Christopher A. Share Save
Reduced Independence in Daily Living Is Associated with the Gut Microbiome in People with HIV and HCV Taylor, Bryn C.; Weldon, Kelly C.; Ellis, Ronald J.; Franklin, Donald; McDonald, Daniel; Humphrey, Gregory; Bryant, MacKenzie; Toronczak, Julia; Schwartz, Tara; Iudicello, Jennifer; Heaton, Robert; Grant, Igor; Gianella, Sara; Letendre, Scott; Swafford, Austin; Dorrestein, Pieter C.; Knight, Rob Share Save
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