arrow
Back
R

Rob Knight

university of california san diego

255H-index
1.8KPaper Count
46.3WCitation Count
Published Papers 687
Publication Date
Multi-omics analyses of facial skin in acne identify distinct microbial and metabolic features at lesional and non-lesional sites
err2026-08-06
err0
errOAAI
errYang Chen; Britta De Pessemier; Tyler Myers; Simone Zuffa; Jasmine Zemlin; Sayeh Pourhamidi; Susi Elaine Dal Belo; Anthony Woo; Magali Moreau; Jolanta Idkowiak-Baldys; Iveta Kalcheva; Paulo Wender Portal Gomes; Chloe Lieng; Samia Almoughrabie; Anna Dan Nguyen; Josh L. Espinoza; Christopher Dupont; Tom Van de Wiele; Chris Callewaert; Daniel McDonald; Karsten Zengler; Andrew Bartko; Luc Aguilar; Philippe Barbarat; Richard L. Gallo; Pieter C. Dorrestein; Qian Zheng; Amina Bouslimani; Se Jin Song; Rob Knight
errShare
errSave
Effect of a complementary feeding intervention based on iron- and zinc-biofortified pearl millet on the gut microbiota in 12–18-month-old children: a randomized trial
err2026-07-30
err0
errOAAI
errSamantha L. Huey; Nathaniel L. Cole; Ioanna Pagani; Antonio González; Julia L. Finkelstein; Jere D. Haas; Shobha A. Udipi; Padmini Ghugre; Ramesh D. Potdar; Rob Knight; Saurabh Mehta
errShare
errSave
Applying Artificial Intelligence and machine learning in precision nutrition
err2026-07-06
err0
errOAAI
errParaskevi Massara; Jonathan Kirkland; Ioanna Pagani; Samantha L. Huey; Haym Hirsh; Daniel McDonald; Lucas Patel; Julia L. Finkelstein; Marie Gantz; Fei Wang; David Erickson; Martin T. Wells; Olivier Elemento; Rob Knight; Saurabh Mehta
errShare
errSave
Lactic acid bacteria and endogenous ethanol mediate proton pump inhibitor-associated MASLD: a multicohort cross-sectional mediation analysis
err2026-05-03
err0
errOAAI
errMark Davids; Hilde Herrema; Albert K. Groen; Henrike Galenkamp; Aeilko Zwinderman; Joonatan Palmu; Aki Havulinna; Teemu Niiranen; Rob Knight; Yaïr Acherman; Rutger Franken; Joanne Verheij; Michael Dukas; null; Jasmohan Bajaj; Cristina Llorente; Bernd Schnabl; Max Nieuwdorp; Abraham Meijnikman
errShare
errSave
Author Correction: Consuming a modified Mediterranean ketogenic diet reverses the peripheral lipid signature of Alzheimer’s disease in humans
err2026-04-06
err0
errOAAI
errBryan J. Neth; Kevin Huynh; Corey Giles; Tingting Wang; Natalie A. Mellett; Thy Duong; Colette Blach; Leyla Schimmel; Thomas C. Register; Kaj Blennow; Henrik Zetterberg; Richa Batra; Annalise Schweickart; Amanda Hazel Dilmore; Cameron Martino; Matthias Arnold; Jan Krumsiek; Xianlin Han; Pieter C. Dorrestein; Rob Knight; Peter J. Meikle; Suzanne Craft; Rima Kaddurah-Daouk
errShare
errSave
Targeted Microbial Shifts and Metabolite Profiles Were Associated with Clinical Response to an Anti-Inflammatory Diet in Osteoarthritis
err2026-03-03
err0
errOAAI
errMarta Sala-Climent; Kevin Bu; Roxana Coras; Martha Cedeno; Simone Zuffa; Jessica Murillo-Saich; Helena Mannochio-Russo; Celeste Allaband; Michal K. Hose; Anna Quan; Soo-In Choi; Katherine Nguyen; Shahrokh Golshan; Rebecca B. Blank; Tiffany Holt; Nancy E. Lane; Rob Knight; Jose Scher; Pieter Dorrestein; Jose Clemente; Monica Guma
errShare
errSave
Value of Multiomics Over Clinical Risk Factors in Hypertension Prediction
err2026-02-01
err1
PREAI
errVuori, Matti; Ruuskanen, Matti O.; Jousilahti, Pekka; Salomaa, Veikko; Yeo, Li-Fang; Kauko, Anni; Vaura, Felix; Havulinna, Aki; Liu, Yang; Meric, Guillaume; Inouye, Michael; Knight, Rob; Lahti, Leo; Niiranen, Teemu
errShare
errSave
Genetic architecture and mechanisms of host-microbiome interactions from a multi-cohort analysis of outbred laboratory rats
err2025-12-18
err0
errOAAI
errHélène Tonnelé; Denghui Chen; Felipe Morillo; Jorge Garcia-Calleja; Apurva S. Chitre; Benjamin B. Johnson; Thiago Missfeldt Sanches; Riyan Cheng; Marc Jan Bonder; Antonio Gonzalez; Tomasz Kosciolek; Anthony M. George; Wenyan Han; Katie Holl; Aidan Horvath; Keita Ishiwari; Christopher P. King; Alexander C. Lamparelli; Connor D. Martin; Angel Garcia Martinez; Alesa H. Netzley; Jordan A. Tripi; Tengfei Wang; Elena Bosch; Peter A. Doris; Oliver Stegle; Hao Chen; Shelly B. Flagel; Paul J. Meyer; Jerry B. Richards; Terry E. Robinson; Leah C. Solberg Woods; Oksana Polesskaya; Rob Knight; Abraham A. Palmer; Amelie Baud
errShare
errSave
Environmental and skin–nasal microbiome variation in South African children with atopic dermatitis
err2025-12-12
err0
errOAAI
errYang Chen; Anna Dan Nguyen; Nonhlanhla Lunjani; Gillian Ndhlovu; Drishti Kaul; Britta De Pessemier; Teruaki Nakatsuji; Murunwa Madzinga; Evgeniya Sovershaeva; Carol Hlela; Michael Levin; Avumile Mankahla; George Hightower; Chris Callewaert; Rob Knight; Richard L. Gallo; Christopher L. Dupont; Felix Dube
errShare
errSave
Scikit-bio: a fundamental Python library for biological omic data analysis
err2025-12-11
err0
PREAI
errMatthew Aton; Daniel McDonald; Jorge Cañardo Alastuey; Raeed Azom; Paarth Batra; Valentyn Bezshapkin; Evan Bolyen; Alexander Cagle; J. Gregory Caporaso; Justine W. Debelius; Kestrel Gorlick; Nirmitha Hamsanipally; Lars Hunger; Aryan Keluskar; Disen Liao; Yang Young Lu; Jose A. Navas-Molina; Anders Pitman; Jai Ram Rideout; Anton Sazonov; Bharath Sathappan; Karen Schwarzberg Lipson; Igor Sfiligoi; Chris Tapo; Yoshiki Vázquez-Baeza; Zijun Wu; Zhenjiang Zech Xu; Mingsong Sam Ye; Jianshu Zhao; Rob Knight; James T. Morton; Qiyun Zhu
errShare
errSave
A resource to empirically establish drug exposure records directly from untargeted metabolomics data
err2025-12-09
err0
errOAAI
errHaoqi Nina Zhao; Kine Eide Kvitne; Corinna Brungs; Siddharth Mohan; Vincent Charron-Lamoureux; Wout Bittremieux; Runbang Tang; Robin Schmid; Santosh Lamichhane; Shipei Xing; Yasin El Abiead; Mohammadsobhan S. Andalibi; Helena Mannochio-Russo; Madison Ambre; Nicole E. Avalon; MacKenzie Bryant; Lindsey A. Burnett; Andrés Mauricio Caraballo-Rodríguez; Martin Casas Maya; Loryn Chin; Lluís Corominas; Ronald J. Ellis; Donald Franklin; Sagan Girod; Paulo Wender P. Gomes; Lauren Hansen; Robert K. Heaton; Jennifer E. Iudicello; Alan K. Jarmusch; Lora Khatib; Scott Letendre; Sarolt Magyari; Daniel McDonald; Ipsita Mohanty; Andrés Cumsille; David J. Moore; Prajit Rajkumar; Dylan H. Ross; Harshada Sapre; Mohammad Reza Zare Shahneh; Ruben Gil-Solsona; Sydney P. Thomas; Caitlin Tribelhorn; Helena M. Tubb; Corinn Walker; Crystal X. Wang; Jasmine Zemlin; Simone Zuffa; David S. Wishart; Pablo Gago-Ferrero; Rima Kaddurah-Daouk; Mingxun Wang; Manuela Raffatellu; Karsten Zengler; Tomáš Pluskal; Libin Xu; Rob Knight; Shirley M. Tsunoda; Pieter C. Dorrestein
errShare
errSave
Calculating fast differential genome coverages among metagenomic sources using micov
err2025-11-20
err0
errOAAI
errYuhan Weng; Caitlin Guccione; Daniel McDonald; Renee Oles; Suzanne Devkota; Evguenia Kopylova; Gregory D. Sepich-Poore; Rodolfo A. Salido; M. Omar Din; Se Jin Song; Kit Curtius; Hiutung Chu; Andrew Bartko; Jeff Hasty; Rob Knight
errShare
errSave
Concordance of Urogenital Microbiome From Sequentially Self-collected Specimens
err2025-11-01
err1
PREAI
errLukacz, Emily S.; Mcdonald, Daniel; Bryant, Mackenzie; Putnam, Sara; Rudser, Kyle; Brennan, Caitriona; Meister, Melanie; Fok, Cynthia S.; Mueller, Margaret G.; Knight, Rob; Brubaker, Linda
errShare
errSave
Gut microbiome and cognitive function in the Hispanic Community Health Study/Study of Latinos
err2025-10-09
err0
PREAI
errNatalia Palacios; Scott Gordon; Tao Wang; Robert Burk; Qibin Qi; Curtis Huttenhower; Hector M. Gonzalez; Rob Knight; Charles De Carli; Marta Daviglus; Melissa Lamar; Gregory Telavera; Wassim Tarraf; Tomasz Kosciolek; Jianwen Cai; Robert C Kaplan
errShare
errSave
Streamlined extraction of nucleic acids and metabolites from low- and high-biomass samples using isopropanol and matrix tubes
err2025-10-01
err0
PREAI
errBrennan, Caitriona; Shaffer, Justin P.; Belda-Ferre, Pedro; Mohanty, Ipsita; Weng, Yuhan; Cantrell, Kalen; Ackermann, Gail; Allaband, Celeste; Bryant, Mackenzie; Farmer, Sawyer; Gonzalez, Antonio; Mcdonald, Daniel; Martino, Cameron; Meehan, Michael J.; Rahman, Gibraan; Salido, Rodolfo A.; Schwartz, Tara; Song, Se Jin; Tribelhorn, Caitlin; Tubb, Helena M.; Dorrestein, Pieter C.; Knight, Rob
errShare
errSave
Bladder health and the urogenital microbiome in community-dwelling adult females
err2025-10-01
err0
PREAI
errBrubaker, L.; Mcdonald, D.; Putnam, S.; Brennan, C.; Fok, C. S.; Lewis, C. E.; Lowder, J. L.; Mueller, M. G.; Rickey, L. M.; Mueller, E. R.; Song, S. J.; Rudser, K.; Knight, R.; Lukacz, E. S.
errShare
errSave
Culture-independent meta-pangenomics enabled by long-read metagenomics reveals associations with pediatric undernutrition
errCell
IF42.5
err2025-09-09
err0
errOAAI
errJeremiah J. Minich; Nicholas Allsing; M. Omar Din; Michael J. Tisza; Kenneth Maleta; Daniel McDonald; Nolan Hartwick; Allen Mamerto; Caitriona Brennan; Lauren Hansen; Justin Shaffer; Emily R. Murray; Tiffany Duong; Rob Knight; Kevin Stephenson; Mark J. Manary; Todd P. Michael
errShare
errSave
CaDAVEr: a metagenome-assembled genome catalog of microbial decomposers across vertebrate environments
err2025-09-01
err0
PREAI
errSeitz, Valerie A.; McGivern, Bridget B.; Shaffer, Michael; Borton, Mikayla A.; Belk, Aeriel D.; Ghadermazi, Parsa; Martino, Cameron; Shenhav, Liat; Zhang, Anru R.; Shi, Pixu; Emmons, Alexandra; Deel, Heather; Xu, Zhenjiang Zech; Nieciecki, Victoria; Zhu, Qiyun; Cantrell, Kalen; Ben-Hur, Asa; Reed, Sasha C.; Humphry, Greg C.; Ackermann, Gail; McDonald, Daniel; Chan, Siu Hung Joshua; Connor, Melissa; Boyd, Derek A.; Smith, Jake; Watson, Jenna M. S.; Vidoli, Giovanna; Steadman, Dawnie; Lynne, Aaron M.; Bucheli, Sibyl; Carter, David O.; Burcham, Zachary M.; Knight, Rob; Wrighton, Kelly C.; Metcalf, Jessica L.
errShare
errSave
Probiotics derived sodium benzoate improves social behavior of offspring exposed in the maternal immune activation through regulation of histone lysine benzoylation in astrocytes
err2025-08-25
err0
errOAAI
errTao Li; Junyu Chen; Kai Mi; Junwen Lei; Zidi Ning; Longya Lu; Zhan Su; Qihui Zhu; Mingyan Lin; Yichao Wang; Juan Wang; Rui Xu; Lora Khaib; Rob Knight; Zhibin Hu; Xingyin Liu
errShare
errSave
Advances in artificial intelligence and precision nutrition approaches to improve maternal and child health in low resource settings
err2025-08-18
err0
errOAAI
errSaurabh Mehta; Samantha L. Huey; Shah Mohammad Fahim; Srishti Sinha; Kripa Rajagopalan; Tahmeed Ahmed; Rob Knight; Julia L. Finkelstein
errShare
errSave